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4YNK
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BU of 4ynk by Molmil
Crystal structure of vitamin D receptor ligand binding domain complexed with a 19-norvitamin D compound
Descriptor: (1R,3R,7E,17beta)-17-{(5S)-5-hydroxy-5-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-1-yl]penta-1,3-diyn-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol, Coactivator peptide drip from cDNA FLJ50196, highly similar to Peroxisome proliferator-activated receptor-binding protein, ...
Authors:Watarai, Y, Ikura, T, Ito, N.
Deposit date:2015-03-10
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Synthesis, Biological Activities, and X-ray Crystal Structural Analysis of 25-Hydroxy-25(or 26)-adamantyl-17-[20(22),23-diynyl]-21-norvitamin D Compounds
J.Med.Chem., 58, 2015
4N0H
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BU of 4n0h by Molmil
Crystal structure of S. cerevisiae mitochondrial GatFAB
Descriptor: Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial, Glutamyl-tRNA(Gln) amidotransferase subunit B, ...
Authors:Araiso, Y, Ishitani, R, Nureki, O.
Deposit date:2013-10-02
Release date:2014-04-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases
Nucleic Acids Res., 42, 2014
4N0I
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BU of 4n0i by Molmil
Crystal structure of S. cerevisiae mitochondrial GatFAB in complex with glutamine
Descriptor: GLUTAMINE, Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial, ...
Authors:Araiso, Y, Ishitani, R, Nureki, O.
Deposit date:2013-10-02
Release date:2014-04-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases
Nucleic Acids Res., 42, 2014
6JNF
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BU of 6jnf by Molmil
Cryo-EM structure of the translocator of the outer mitochondrial membrane
Descriptor: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate, Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, ...
Authors:Araiso, Y, Tsutsumi, A, Suzuki, J, Yunoki, K, Kawano, S, Kikkawa, M, Endo, T.
Deposit date:2019-03-14
Release date:2019-10-16
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Structure of the mitochondrial import gate reveals distinct preprotein paths.
Nature, 575, 2019
2Z67
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BU of 2z67 by Molmil
Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) selenium transferase (SepSecS)
Descriptor: O-phosphoseryl-tRNA(Sec) selenium transferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
Authors:Araiso, Y, Ishitani, R, Pailouer, S, Oshikane, H, Domae, N, Soll, D, Nureki, O.
Deposit date:2007-07-23
Release date:2008-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation.
Nucleic Acids Res., 36, 2008
3A4M
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BU of 3a4m by Molmil
Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, IODIDE ION, ...
Authors:Araiso, Y, Ishitani, R, Soll, D, Nureki, O.
Deposit date:2009-07-10
Release date:2009-10-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.792 Å)
Cite:Structure of a tRNA-dependent kinase essential for selenocysteine decoding
Proc.Natl.Acad.Sci.USA, 106, 2009
3A4L
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BU of 3a4l by Molmil
Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase
Descriptor: 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ...
Authors:Araiso, Y, Ishitani, R, Soll, D, Nureki, O.
Deposit date:2009-07-10
Release date:2009-10-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a tRNA-dependent kinase essential for selenocysteine decoding
Proc.Natl.Acad.Sci.USA, 106, 2009
3A4N
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BU of 3a4n by Molmil
Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase
Descriptor: 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ...
Authors:Araiso, Y, Ishitani, R, Soll, D, Nureki, O.
Deposit date:2009-07-10
Release date:2009-10-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a tRNA-dependent kinase essential for selenocysteine decoding
Proc.Natl.Acad.Sci.USA, 106, 2009
3AM1
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BU of 3am1 by Molmil
Crystal structure of O-Phosphoseryl-tRNA kinase complexed with anticodon-stem/loop truncated tRNA(Sec)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ASL-truncated tRNA, L-seryl-tRNA(Sec) kinase, ...
Authors:Araiso, Y, Ishitani, R, Nureki, O.
Deposit date:2010-08-11
Release date:2010-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA(Sec)
Nucleic Acids Res., 39, 2011
1VD4
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BU of 1vd4 by Molmil
Solution structure of the zinc finger domain of TFIIE alpha
Descriptor: Transcription initiation factor IIE, alpha subunit, ZINC ION
Authors:Okuda, M, Tanaka, A, Arai, Y, Satoh, M, Okamura, H, Nagadoi, A, Hanaoka, F, Ohkuma, Y, Nishimura, Y.
Deposit date:2004-03-18
Release date:2004-10-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.
J.Biol.Chem., 279, 2004
3UFZ
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BU of 3ufz by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
Descriptor: Green fluorescent protein
Authors:Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
Deposit date:2011-11-02
Release date:2012-10-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
3UG0
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BU of 3ug0 by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code
Descriptor: Green fluorescent protein
Authors:Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
Deposit date:2011-11-02
Release date:2012-10-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
3AL5
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BU of 3al5 by Molmil
Crystal structure of Human TYW5
Descriptor: JmjC domain-containing protein C2orf60, MAGNESIUM ION
Authors:Kato, M, Araiso, Y, Ishitani, R, Nureki, O.
Deposit date:2010-07-26
Release date:2010-11-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification.
Nucleic Acids Res., 39, 2011
3AL6
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BU of 3al6 by Molmil
Crystal structure of Human TYW5
Descriptor: 2-OXOGLUTARIC ACID, JmjC domain-containing protein C2orf60, NICKEL (II) ION
Authors:Kato, M, Araiso, Y, Ishitani, R, Nureki, O.
Deposit date:2010-07-26
Release date:2010-12-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification.
Nucleic Acids Res., 39, 2011
2ZNI
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BU of 2zni by Molmil
Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense
Descriptor: CALCIUM ION, Pyrrolysyl-tRNA synthetase, bacterial tRNA
Authors:Nozawa, K, Araiso, Y, Soll, D, Ishitani, R, Nureki, O.
Deposit date:2008-04-25
Release date:2008-12-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality
Nature, 457, 2009
2ZNJ
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BU of 2znj by Molmil
Crystal structure of Pyrrolysyl-tRNA synthetase from Desulfitobacterium hafniense
Descriptor: Putative uncharacterized protein
Authors:Nozawa, K, Araiso, Y, Soll, D, Ishitani, R, Nureki, O.
Deposit date:2008-04-25
Release date:2008-12-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality
Nature, 457, 2009
3WCK
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BU of 3wck by Molmil
Crystal structure of monomeric photosensitizing fluorescent protein, Supernova
Descriptor: Monomeric photosenitizing fluorescent protein supernova
Authors:Sakai, N, Matsuda, T, Takemoto, K, Nagai, T.
Deposit date:2013-05-27
Release date:2013-10-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation
Sci Rep, 3, 2013
3VTB
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BU of 3vtb by Molmil
Crystal structure of rat vitamin D receptor bound to a partial agonist 25-adamantyl-23-yne-19-norvitammin D ADTK1
Descriptor: (1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol, COACTIVATOR PEPTIDE DRIP, Vitamin D3 receptor
Authors:Nakabayashi, M, Kudo, T, Tokiwa, H, Makishima, M, Yamada, S, Ikura, T, Ito, N.
Deposit date:2012-05-26
Release date:2013-06-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Combination of Triple Bond and Adamantane Ring on the Vitamin D Side Chain Produced Partial Agonists for Vitamin D Receptor.
J.Med.Chem., 2014
3VTC
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BU of 3vtc by Molmil
Crystal structure of rat vitamin D receptor bound to a partial agonist 26-adamantyl-23-yne-19-norvitammin D ADTK3
Descriptor: (1R,3R,7E,17beta)-17-{(2R,6R)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol, 1,2-ETHANEDIOL, COACTIVATOR PEPTIDE DRIP, ...
Authors:Nakabayashi, M, Kudo, T, Tokiwa, H, Makishima, M, Yamada, S, Ikura, T, Ito, N.
Deposit date:2012-05-26
Release date:2013-06-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Combination of Triple Bond and Adamantane Ring on the Vitamin D Side Chain Produced Partial Agonists for Vitamin D Receptor.
J.Med.Chem., 2014
3VTD
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BU of 3vtd by Molmil
Crystal structure of rat vitamin D receptor bound to a partial agonist 26-adamantyl-23-yne-19-norvitammin D ADTK4
Descriptor: (1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol, COACTIVATOR PEPTIDE DRIP, Vitamin D3 receptor
Authors:Nakabayashi, M, Kudo, T, Tokiwa, H, Makishima, M, Yamada, S, Ikura, T, Ito, N.
Deposit date:2012-05-26
Release date:2013-06-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Combination of Triple Bond and Adamantane Ring on the Vitamin D Side Chain Produced Partial Agonists for Vitamin D Receptor.
J.Med.Chem., 2014
3AII
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BU of 3aii by Molmil
Archaeal non-discriminating glutamyl-tRNA synthetase from Methanothermobacter thermautotrophicus
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CALCIUM ION, ...
Authors:Nureki, O, Ishitani, R.
Deposit date:2010-05-14
Release date:2010-08-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation
Nucleic Acids Res., 2010

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