2Z67

Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) selenium transferase (SepSecS)

Summary for 2Z67

DescriptorO-phosphoseryl-tRNA(Sec) selenium transferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, ... (4 entities in total)
Functional Keywordsselenocysteine biosynthesis, seven-stranded bete-strand, pyridoxal-5'-phosphate, protein biosynthesis, pyridoxal phosphate, selenium, transferase
Biological sourceMethanococcus maripaludis
Total number of polymer chains4
Total molecular weight205781.1
Authors
Araiso, Y.,Ishitani, R.,Pailouer, S.,Oshikane, H.,Domae, N.,Soll, D.,Nureki, O. (deposition date: 2007-07-23, release date: 2008-04-29, Last modification date: 2011-07-13)
Primary citation
Araiso, Y.,Palioura, S.,Ishitani, R.,Sherrer, R.L.,O'Donoghue, P.,Yuan, J.,Oshikane, H.,Domae, N.,Defranco, J.,Soll, D.,Nureki, O.
Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation.
Nucleic Acids Res., 36:1187-1199, 2008
PubMed: 18158303 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gkm1122
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.5 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.269230.9%6.4%1.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2z67
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Molmil generated image of 2z67
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Molmil generated image of 2z67
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More Biological unit images

Molmil generated image of 2z67
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Molmil generated image of 2z67
rotated about x axis by 90°
Molmil generated image of 2z67
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2z67.pdb2.gz [140.88 KB])
Coordinate files for Biological unit (2z67.pdb4.gz [142.17 KB])
Coordinate files for Biological unit (2z67.pdb3.gz [142.5 KB])
Coordinate files for Biological unit (2z67.pdb1.gz [277.6 KB])
Coordinate files for Biological unit (2z67.pdb5.gz [141.34 KB])
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