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2A18
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BU of 2a18 by Molmil
carboxysome shell protein ccmK4, crystal form 2
Descriptor: AMMONIUM ION, Carbon dioxide concentrating mechanism protein ccmK homolog 4
Authors:Kerfeld, C.A, Sawaya, M.R, Tanaka, S, Nguyen, C.V, Phillips, M, Beeby, M, Yeates, T.O.
Deposit date:2005-06-18
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Protein structures forming the shell of primitive bacterial organelles
Science, 309, 2005
2B5O
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BU of 2b5o by Molmil
ferredoxin-NADP reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, SULFATE ION
Authors:Sawaya, M.R, Kerfeld, C.A, Gomez-Lojero, C, Krogmann, D, Bryant, D.A, Yeates, T.O.
Deposit date:2005-09-29
Release date:2005-10-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Crystal Structure of Ferredoxin-NADP reductase from Synechococcus sp. (PCC 7002)
To be Published
4D9J
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BU of 4d9j by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains
Descriptor: Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1
Authors:Lai, Y.-T, Cascio, D, Yeates, T.O.
Deposit date:2012-01-11
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.92 Å)
Cite:Structure of a 16-nm cage designed by using protein oligomers.
Science, 336, 2012
4DDF
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BU of 4ddf by Molmil
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4
Descriptor: CHLORIDE ION, Propanediol utilization polyhedral body protein PduT, SULFATE ION
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-18
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4DCL
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BU of 4dcl by Molmil
Computationally Designed Self-assembling tetrahedron protein, T308, Crystallized in space group F23
Descriptor: Putative acetyltransferase SACOL2570
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-17
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4EGG
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BU of 4egg by Molmil
Computationally Designed Self-assembling tetrahedron protein, T310
Descriptor: GLYCEROL, Putative acetyltransferase SACOL2570
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-03-30
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4EDI
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BU of 4edi by Molmil
Disulfide bonded EutL from Clostridium perfringens
Descriptor: Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Crowley, C.S, Kopstein, J.S, Yeates, T.O.
Deposit date:2012-03-27
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015
1CYJ
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BU of 1cyj by Molmil
CYTOCHROME C6
Descriptor: CADMIUM ION, CYTOCHROME C6, HEME C
Authors:Kerfeld, C.A, Yeates, T.O.
Deposit date:1995-05-09
Release date:1996-01-29
Last modified:2021-03-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of chloroplast cytochrome c6 at 1.9 A resolution: evidence for functional oligomerization.
J.Mol.Biol., 250, 1995
1CYI
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BU of 1cyi by Molmil
CYTOCHROME C6
Descriptor: CADMIUM ION, CYTOCHROME C6, HEME C
Authors:Kerfeld, C.A, Yeates, T.O.
Deposit date:1995-05-09
Release date:1996-01-29
Last modified:2021-03-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of chloroplast cytochrome c6 at 1.9 A resolution: evidence for functional oligomerization.
J.Mol.Biol., 250, 1995
1DOF
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BU of 1dof by Molmil
THE CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM PYROBACULUM AEROPHILUM: INSIGHTS INTO THERMAL STABILITY AND HUMAN PATHOLOGY
Descriptor: ADENYLOSUCCINATE LYASE
Authors:Toth, E.A, Yeates, T.O, Goedken, E, Dixon, J.E, Marqusee, S.
Deposit date:1999-12-20
Release date:2001-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of adenylosuccinate lyase from Pyrobaculum aerophilum reveals an intracellular protein with three disulfide bonds.
J.Mol.Biol., 301, 2000
1F1F
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BU of 1f1f by Molmil
CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM ARTHROSPIRA MAXIMA
Descriptor: CYTOCHROME C6, HEME C
Authors:Kerfeld, C.A, Serag, A.A, Sawaya, M.R, Krogmann, D.W, Yeates, T.O.
Deposit date:2000-05-18
Release date:2001-08-08
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of cytochrome c-549 and cytochrome c6 from the cyanobacterium Arthrospira maxima.
Biochemistry, 40, 2001
1F1C
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BU of 1f1c by Molmil
CRYSTAL STRUCTURE OF CYTOCHROME C549
Descriptor: CYTOCHROME C549, HEME C
Authors:Kerfeld, C.A, Sawaya, M.R, Yeates, T.O, Krogmann, D.W.
Deposit date:2000-05-18
Release date:2001-08-08
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of cytochrome c-549 and cytochrome c6 from the cyanobacterium Arthrospira maxima.
Biochemistry, 40, 2001
8UMP
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BU of 8ump by Molmil
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml35-redesigned-CutA-fold, T33-ml35-redesigned-TPR-domain-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-18
Release date:2023-11-15
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8UF0
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BU of 8uf0 by Molmil
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml23-redesigned-CutA-fold, T33-ml23-redesigned-tandem-BMC-T-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-03
Release date:2023-11-15
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.02 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8TFS
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BU of 8tfs by Molmil
Crystal structure of the Rhodanese-like domain of Vretifemale_1082 from Volvox reticuliferus
Descriptor: Rhodanese domain-containing protein
Authors:Arbing, M.A, Jonikas, M, Yeates, T.O.
Deposit date:2023-07-11
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the Rhodanese-like domain of Vretifemale_1082 from Volvox reticuliferus
To Be Published
8UI2
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BU of 8ui2 by Molmil
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml28-redesigned-CutA-fold, T33-ml28-redesigned-tandem-BMC-T-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-09
Release date:2024-03-06
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8UMR
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BU of 8umr by Molmil
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml35-redesigned-CutA-fold, T33-ml35-redesigned-TPR-domain-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-18
Release date:2024-03-06
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (4.42 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8UN1
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BU of 8un1 by Molmil
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml23-redesigned-CutA-fold, T33-ml23-redesigned-tandem-BMC-T-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-18
Release date:2024-03-06
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8UKM
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BU of 8ukm by Molmil
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Descriptor: T33-ml30-redesigned-4-OT-fold, T33-ml30-redesigned-tandem-BMC-T-fold
Authors:Castells-Graells, R, Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-14
Release date:2024-03-06
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 2024
8T1M
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BU of 8t1m by Molmil
Novel Domain of Unknown Function Solved with AlphaFold
Descriptor: DUF1842 domain-containing protein
Authors:Miller, J.E, Agdanowski, M.P, Cascio, D, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-06-02
Release date:2024-01-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography.
Acta Crystallogr D Struct Biol, 80, 2024
8T0B
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BU of 8t0b by Molmil
Novel Domain of Unknown Function Solved with AlphaFold
Descriptor: DUF1842 domain-containing protein
Authors:Miller, J.E, Cascio, D, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-05-31
Release date:2024-01-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography.
Acta Crystallogr D Struct Biol, 80, 2024
8T1N
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BU of 8t1n by Molmil
Micro-ED Structure of a Novel Domain of Unknown Function Solved with AlphaFold
Descriptor: DUF1842 domain-containing protein
Authors:Miller, J.E, Cascio, D, Sawaya, M.R, Cannon, K.A, Rodriguez, J.A, Yeates, T.O.
Deposit date:2023-06-02
Release date:2024-01-17
Last modified:2024-04-10
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography.
Acta Crystallogr D Struct Biol, 80, 2024
4YJ2
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BU of 4yj2 by Molmil
Crystal structure of tubulin bound to MI-181
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5,6-dimethyl-2-[(E)-2-(pyridin-3-yl)ethenyl]-1,3-benzothiazole, CALCIUM ION, ...
Authors:McNamara, D.E, Torres, J.Z, Yeates, T.O.
Deposit date:2015-03-03
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of potent anticancer compounds bound to tubulin.
Protein Sci., 24, 2015
4YJ3
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BU of 4yj3 by Molmil
Crystal structure of tubulin bound to compound 2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-(4-ethoxyphenyl)-3-(2-methoxyphenyl)-7H-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazine, CALCIUM ION, ...
Authors:McNamara, D.E, Torres, J.Z, Yeates, T.O.
Deposit date:2015-03-03
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.75 Å)
Cite:Structures of potent anticancer compounds bound to tubulin.
Protein Sci., 24, 2015
1JG1
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BU of 1jg1 by Molmil
Crystal Structure of L-isoaspartyl (D-aspartyl) O-methyltransferase with S-ADENOSYL-L-HOMOCYSTEINE
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, protein-L-isoaspartate O-methyltransferase
Authors:Griffith, S.C, Sawaya, M.R, Boutz, D, Thapar, N, Katz, J, Clarke, S, Yeates, T.O.
Deposit date:2001-06-22
Release date:2001-11-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of a protein repair methyltransferase from Pyrococcus furiosus with its L-isoaspartyl peptide substrate.
J.Mol.Biol., 313, 2001

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