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7T2U
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BU of 7t2u by Molmil
SARS-CoV2 3C-Like protease complexed with Nemo peptide
分子名称: 3C-Like Protease, NEMO peptide
著者Wakatsuki, S, Mathews, I.I, Hameedi, M.A.
登録日2021-12-06
公開日2022-09-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.
Nat Commun, 13, 2022
1A2X
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BU of 1a2x by Molmil
COMPLEX OF TROPONIN C WITH A 47 RESIDUE (1-47) FRAGMENT OF TROPONIN I
分子名称: CALCIUM ION, TROPONIN C, TROPONIN I
著者Vassylyev, D.G, Takeda, S, Wakatsuki, S, Maeda, K, Maeda, Y.
登録日1998-01-13
公開日1998-07-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of troponin C in complex with troponin I fragment at 2.3-A resolution.
Proc.Natl.Acad.Sci.USA, 95, 1998
8EUA
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BU of 8eua by Molmil
Structure of SARS-CoV2 PLpro bound to a covalent inhibitor
分子名称: Papain-like protease nsp3, SULFATE ION, ZINC ION, ...
著者Mathews, I.I, Pokhrel, S, Wakatsuki, S.
登録日2022-10-18
公開日2023-04-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2.
Nat Commun, 14, 2023
4WAA
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BU of 4waa by Molmil
Crystal structure of Nix LIR-fused human LC3B_2-119
分子名称: Microtubule-associated proteins 1A/1B light chain 3B
著者Suzuki, H, Ravichandran, A.C, Dobson, R.C.J, Novak, I, Wakatsuki, S.
登録日2014-08-29
公開日2015-09-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins.
Sci Rep, 7, 2017
6XZC
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BU of 6xzc by Molmil
CryoEM structure of the ring-shaped virulence factor EspB from Mycobacterium tuberculosis
分子名称: ESX-1 secretion-associated protein EspB
著者Piton, J, Pojer, F, Wakatsuki, S, Gati, C, Cole, S.T.
登録日2020-02-03
公開日2020-06-17
最終更新日2020-09-16
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献High resolution CryoEM structure of the ring-shaped virulence factor EspB fromMycobacterium tuberculosis.
J Struct Biol X, 4, 2020
7T2V
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BU of 7t2v by Molmil
SARS CoV2 Mpro C145S mutant
分子名称: 3C-Like Protease
著者Mathews, I.I, Hameedi, M.A, Wakatsuki, S.
登録日2021-12-06
公開日2022-09-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.
Nat Commun, 13, 2022
7T2T
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BU of 7t2t by Molmil
SARS-CoV2 Mpro native form
分子名称: 3C-like proteinase
著者Mathews, I.I, Hameedi, M.A, Wakatsuki, S.
登録日2021-12-06
公開日2022-09-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.
Nat Commun, 13, 2022
6E08
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BU of 6e08 by Molmil
Crystal structure of G6PD in complex with structural NADP
分子名称: GLYCEROL, Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Rahighi, S, Mochly Rosen, D, Wakatsuki, S.
登録日2018-07-06
公開日2018-07-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Correcting glucose-6-phosphate dehydrogenase deficiency with a small-molecule activator.
Nat Commun, 9, 2018
6E07
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BU of 6e07 by Molmil
Crystal structure of Canton G6PD in complex with structural NADP
分子名称: GLYCEROL, Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Rahighi, S, Mochly-Rosen, D, Wakatsuki, S.
登録日2018-07-06
公開日2018-07-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Correcting glucose-6-phosphate dehydrogenase deficiency with a small-molecule activator.
Nat Commun, 9, 2018
7SEI
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BU of 7sei by Molmil
Glucose-6-phosphate 1-dehydrogenase (K403Q)
分子名称: Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Mathews, I.I, Garcia, A.A, Wakatsuki, S, Mochly-Rosen, D.
登録日2021-09-30
公開日2022-08-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Stabilization of glucose-6-phosphate dehydrogenase oligomers enhances catalytic activity and stability of clinical variants.
J.Biol.Chem., 298, 2022
7SEH
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BU of 7seh by Molmil
Glucose-6-phosphate 1-dehydrogenase (K403QdLtL)
分子名称: Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Mathews, I.I, Garcia, A.A, Wakatsuki, S, Mochly-Rosen, D.
登録日2021-09-30
公開日2022-08-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Stabilization of glucose-6-phosphate dehydrogenase oligomers enhances catalytic activity and stability of clinical variants.
J.Biol.Chem., 298, 2022
4DCN
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BU of 4dcn by Molmil
Crystal Structure Analysis of the Arfaptin2 BAR domain in Complex with ARL1
分子名称: ADP-ribosylation factor-like protein 1, Arfaptin-2, MAGNESIUM ION, ...
著者Nakamura, K, Xie, Y, Kawasaki, M, Kato, R, Wakatsuki, S.
登録日2012-01-18
公開日2012-06-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structural basis for membrane binding specificity of the Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-2 determined by Arl1 GTPase
J.Biol.Chem., 287, 2012
4XKH
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BU of 4xkh by Molmil
CRYSTAL STRUCTURE OF THE AIRAPL TANDEM UIMS IN COMPLEX WITH A LYS48-LINKED TRI-UBIQUITIN
分子名称: AN1-type zinc finger protein 2B, Polyubiquitin-C
著者Rahighi, S, Kawasaki, M, Stanhill, A, Wakatsuki, S.
登録日2015-01-11
公開日2016-02-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains.
Structure, 24, 2016
6N6S
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BU of 6n6s by Molmil
Crystal structure of ABIN-1 UBAN
分子名称: TNFAIP3-interacting protein 1
著者Rahighi, S, Dikic, I, Wakatsuki, S.
登録日2018-11-27
公開日2019-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains.
J.Mol.Biol., 431, 2019
6N5M
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BU of 6n5m by Molmil
Crystal structure of ABIN-1 UBAN in complex with one M1-linked di-ubiquitin
分子名称: Polyubiquitin-C, TNFAIP3-interacting protein 1
著者Rahighi, S, Dikic, I, Wakatsuki, S.
登録日2018-11-22
公開日2019-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains.
J.Mol.Biol., 431, 2019
6N6R
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BU of 6n6r by Molmil
Crystal structure of ABIN-1 UBAN in complex with two M1-linked di-ubiquitins
分子名称: TNFAIP3-interacting protein 1, Ubiquitin
著者Rahighi, S, Dikic, I, Wakatsuki, S.
登録日2018-11-27
公開日2019-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains.
J.Mol.Biol., 431, 2019
1EBE
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BU of 1ebe by Molmil
Laue diffraction study on the structure of cytochrome c peroxidase compound I
分子名称: CYTOCHROME C PEROXIDASE, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
著者Fulop, V, Phizackerley, R.P, Soltis, S.M, Clifton, I.J, Wakatsuki, S, Erman, J.E, Hajdu, J, Edwards, S.L.
登録日2001-07-25
公開日2001-07-26
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Laue Diffraction Study on the Structure of Cytochrome C Peroxidase Compound I
Structure, 2, 1994
1F2D
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BU of 1f2d by Molmil
1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE
分子名称: 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
著者Yao, M, Ose, T, Sugimoto, H, Horiuchi, A, Nakagawa, A, Yokoi, D, Murakami, T, Honma, M, Wakatsuki, S, Tanaka, I.
登録日2000-05-24
公開日2000-12-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus.
J.Biol.Chem., 275, 2000
3H3S
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BU of 3h3s by Molmil
Crystal structure of the CERT START domain in complex with HPA-15
分子名称: Goodpasture antigen binding protein, N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]pentadecanamide
著者Kudo, N, Wakatsuki, S, Kato, R.
登録日2009-04-17
公開日2010-03-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer.
J.Mol.Biol., 396, 2010
3H3T
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BU of 3h3t by Molmil
Crystal structure of the CERT START domain in complex with HPA-16
分子名称: Goodpasture antigen binding protein, N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]hexadecanamide
著者Kudo, N, Wakatsuki, S, Kato, R.
登録日2009-04-17
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer.
J.Mol.Biol., 396, 2010
3H3Q
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BU of 3h3q by Molmil
Crystal structure of the CERT START domain in complex with HPA-13
分子名称: Goodpasture antigen binding protein, N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]tridecanamide
著者Kudo, N, Wakatsuki, S, Kato, R.
登録日2009-04-17
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer.
J.Mol.Biol., 396, 2010
3H3R
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BU of 3h3r by Molmil
Crystal structure of the CERT START domain in complex with HPA-14
分子名称: Goodpasture antigen binding protein, N-[(1R,3R)-3-hydroxy-1-(hydroxymethyl)-3-phenylpropyl]tetradecanamide
著者Kudo, N, Wakatsuki, S, Kato, R.
登録日2009-04-17
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structures of the CERT START domain with inhibitors provide insights into the mechanism of ceramide transfer.
J.Mol.Biol., 396, 2010
4Z4K
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BU of 4z4k by Molmil
Crystal structure of GFP-TAX1BP1 UBZ1+2 domain fusion protein
分子名称: Green fluorescent protein,Tax1-binding protein 1, ZINC ION
著者Rohaim, A, Kawasaki, M, Wakatsuki, S.
登録日2015-04-02
公開日2016-04-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 283, 2016
4Z4M
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BU of 4z4m by Molmil
Crystal structure of GFP-TAX1BP1 UBZ2 domain fusion protein
分子名称: Green fluorescent protein,Tax1-binding protein 1, ZINC ION
著者Rohaim, A, Kawasaki, M, Wakatsuki, S.
登録日2015-04-02
公開日2016-04-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 283, 2016
4NC5
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BU of 4nc5 by Molmil
Human sialidase 2 in complex with 2,3-difluorosialic acid (covalent intermediate)
分子名称: 5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid, PHOSPHATE ION, Sialidase-2
著者Buchini, S, Gallat, F.-X, Greig, I.R, Kim, J.-H, Wakatsuki, S, Chavas, L.M.G, Withers, S.G.
登録日2013-10-24
公開日2013-11-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.513 Å)
主引用文献Tuning mechanism-based inactivators of neuraminidases: mechanistic and structural insights.
Angew.Chem.Int.Ed.Engl., 53, 2014

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