1ULI
| Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1 | Descriptor: | FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, biphenyl dioxygenase large subunit, ... | Authors: | Furusawa, Y, Nagarajan, V, Masai, E, Tanokura, M, Fukuda, M, Senda, T. | Deposit date: | 2003-09-12 | Release date: | 2004-09-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1 J.Mol.Biol., 342, 2004
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1ULJ
| Biphenyl dioxygenase (BphA1A2) in complex with the substrate | Descriptor: | BIPHENYL, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Furusawa, Y, Nagarajan, V, Masai, E, Tanokura, M, Fukuda, M, Senda, T. | Deposit date: | 2003-09-12 | Release date: | 2004-09-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1 J.Mol.Biol., 342, 2004
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6AGZ
| Crystal structure of Old Yellow Enzyme from Pichia sp. AKU4542 | Descriptor: | FLAVIN MONONUCLEOTIDE, Old Yellow Enzyme | Authors: | Horita, S, Kataoka, M, Kitamura, N, Nakagawa, T, Miyakawa, T, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M. | Deposit date: | 2018-08-15 | Release date: | 2019-06-26 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural basis of different substrate preferences of two old yellow enzymes from yeasts in the asymmetric reduction of enone compounds. Biosci.Biotechnol.Biochem., 83, 2019
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2Z1N
| Crystal structure of APE0912 from Aeropyrum pernix K1 | Descriptor: | SODIUM ION, dehydrogenase | Authors: | Ichimura, T, Yamamura, A, Mimoto, F, Ohtsuka, J, Miyazono, K, Okai, M, Kamo, M, Lee, W.-C, Nagata, K, Tanokura, M. | Deposit date: | 2007-05-10 | Release date: | 2008-03-18 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1 Proteins, 70, 2008
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1VFR
| THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI | Descriptor: | FLAVIN MONONUCLEOTIDE, NAD(P)H:FMN OXIDOREDUCTASE | Authors: | Koike, H, Sasaki, H, Kobori, T, Zenno, S, Saigo, K, Murphy, M.E.P, Adman, E.T, Tanokura, M. | Deposit date: | 1998-01-09 | Release date: | 1999-02-16 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | 1.8 A crystal structure of the major NAD(P)H:FMN oxidoreductase of a bioluminescent bacterium, Vibrio fischeri: overall structure, cofactor and substrate-analog binding, and comparison with related flavoproteins. J.Mol.Biol., 280, 1998
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2ZUA
| Crystal structure of nucleoside diphosphate kinase from Haloarcula quadrata | Descriptor: | Nucleoside diphosphate kinase | Authors: | Ichimura, T, Yamamura, A, Ohtsuka, J, Miyazono, K, Okai, M, Nagata, K, Tanokura, M. | Deposit date: | 2008-10-15 | Release date: | 2009-08-25 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.59 Å) | Cite: | Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases Biophys.J., 96, 2009
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5XOD
| Crystal structure of human Smad2-Ski complex | Descriptor: | Mothers against decapentaplegic homolog 2, Ski oncogene | Authors: | Miyazono, K, Moriwaki, S, Ito, T, Tanokura, M. | Deposit date: | 2017-05-27 | Release date: | 2018-03-28 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.851 Å) | Cite: | Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors Sci Signal, 11, 2018
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5XOC
| Crystal structure of human Smad3-FoxH1 complex | Descriptor: | Mothers against decapentaplegic homolog 3, Thioredoxin 1,Forkhead box protein H1 | Authors: | Miyazono, K, Ito, T, Tanokura, M. | Deposit date: | 2017-05-27 | Release date: | 2018-03-28 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors Sci Signal, 11, 2018
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5ZOJ
| Crystal structure of human SMAD2-MAN1 complex | Descriptor: | Inner nuclear membrane protein Man1, Mothers against decapentaplegic homolog 2 | Authors: | Miyazono, K, Ohno, Y, Ito, T, Tanokura, M. | Deposit date: | 2018-04-13 | Release date: | 2018-10-10 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.794 Å) | Cite: | Structural basis for receptor-regulated SMAD recognition by MAN1 Nucleic Acids Res., 46, 2018
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5ZOK
| Crystal structure of human SMAD1-MAN1 complex. | Descriptor: | Inner nuclear membrane protein Man1, Mothers against decapentaplegic homolog 1 | Authors: | Miyazono, K, Ito, T, Tanokura, M. | Deposit date: | 2018-04-13 | Release date: | 2018-10-17 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Structural basis for receptor-regulated SMAD recognition by MAN1 Nucleic Acids Res., 46, 2018
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1V5I
| Crystal structure of serine protease inhibitor POIA1 in complex with subtilisin BPN' | Descriptor: | CALCIUM ION, GLYCEROL, IA-1=serine proteinase inhibitor, ... | Authors: | Lee, W.C, Kikkawa, M, Kojima, S, Miura, K, Tanokura, M. | Deposit date: | 2003-11-24 | Release date: | 2005-03-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of serine protease inhibitor POIA1 in complex with subtilisin BPN' To be Published
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1V3Y
| The crystal structure of peptide deformylase from Thermus thermophilus HB8 | Descriptor: | Peptide deformylase | Authors: | Kamo, M, Kudo, N, Lee, W.C, Ito, K, Motoshim, H, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-11-07 | Release date: | 2004-12-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.81 Å) | Cite: | The crystal structure of peptide deformylase from Thermus thermophilus HB8 to be published
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1WST
| Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus | Descriptor: | PYRIDOXAL-5'-PHOSPHATE, multiple substrate aminotransferase | Authors: | Lee, W.C, Manabe, F, Nemoto, N, Tamakoshi, M, Tanokura, M, Yamagishi, A. | Deposit date: | 2004-11-10 | Release date: | 2005-10-25 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus To be Published
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1ZOV
| Crystal Structure of Monomeric Sarcosine Oxidase from Bacillus sp. NS-129 | Descriptor: | CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Monomeric sarcosine oxidase | Authors: | Nagata, K, Sasaki, H, Ohtsuka, J, Hua, M, Okai, M, Kubota, K, Kamo, M, Ito, K, Ichikawa, T, Koyama, Y, Tanokura, M. | Deposit date: | 2005-05-14 | Release date: | 2006-05-23 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop PROC.JPN.ACAD.,SER.B, 81, 2005
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2YYS
| Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8 | Descriptor: | GLYCEROL, Proline iminopeptidase-related protein | Authors: | Okai, M, Miyauchi, Y, Ebihara, A, Lee, W.C, Nagata, K, Tanokura, M. | Deposit date: | 2007-05-01 | Release date: | 2008-02-26 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8 Proteins, 70, 2008
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2ZBC
| Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7. | Descriptor: | 83aa long hypothetical transcriptional regulator asnC, ISOLEUCINE | Authors: | Miyazono, K, Tsujimura, M, Kawarabayasi, Y, Tanokura, M. | Deposit date: | 2007-10-19 | Release date: | 2008-03-11 | Last modified: | 2017-10-11 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7 Proteins, 71, 2008
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1V4B
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6JHJ
| Structure of Marine bacterial laminarinase mutant-E135A | Descriptor: | CALCIUM ION, LamCAT | Authors: | Yang, J, Xu, Y, Miyakawa, T, Tanokura, M, Long, L. | Deposit date: | 2019-02-18 | Release date: | 2019-04-03 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.69 Å) | Cite: | Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase. Appl.Environ.Microbiol., 86, 2020
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6JO3
| Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with substrate sn-glycerol-1-phosphate | Descriptor: | Geranylgeranylglyceryl phosphate synthase, SN-GLYCEROL-1-PHOSPHATE | Authors: | Nemoto, N, Miyazono, K, Tanokura, M, Yamagishi, A. | Deposit date: | 2019-03-20 | Release date: | 2019-04-03 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with the substrate sn-glycerol 1-phosphate. Acta Crystallogr.,Sect.F, 75, 2019
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6JH5
| Structure of Marine bacterial laminarinase | Descriptor: | CALCIUM ION, LamCAT | Authors: | Yang, J, Xu, Y, Miyakawa, T, Ru, L, Tanokura, M, Long, L. | Deposit date: | 2019-02-17 | Release date: | 2019-04-03 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.54 Å) | Cite: | Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase. Appl.Environ.Microbiol., 86, 2020
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6JIA
| Marine bacterial laminarinase mutant E135A complex with laminaritetraose | Descriptor: | CALCIUM ION, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose, laminarinase | Authors: | Yang, J, Xu, Y, Miyakawa, T, Tanokura, M, Long, L. | Deposit date: | 2019-02-20 | Release date: | 2019-05-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase. Appl.Environ.Microbiol., 86, 2020
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4HE7
| Crystal Structure of Brazzein | Descriptor: | Defensin-like protein, SODIUM ION | Authors: | Nagata, K, Hongo, N, Kameda, Y, Yamamura, A, Sasaki, H, Lee, W.C, Ishikawa, K, Suzuki, E, Tanokura, M. | Deposit date: | 2012-10-03 | Release date: | 2013-03-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana Acta Crystallogr.,Sect.D, 69, 2013
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6K31
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2YQY
| Crystal structure of TT2238, a four-helix bundle protein | Descriptor: | Hypothetical protein TTHA0303 | Authors: | Nagata, K, Ohtsuka, J, Iino, H, Ebihara, A, Yokoyama, S, Kuramitsu, S, Tanokura, M. | Deposit date: | 2007-03-31 | Release date: | 2008-03-04 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of TTHA0303 (TT2238), a four-helix bundle protein with an exposed histidine triad from Thermus thermophilus HB8 at 2.0 A Proteins, 70, 2008
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6KZA
| Crystal structure of the complex of the interaction domains of E. coli DnaB helicase and DnaC helicase loader | Descriptor: | DNA replication protein DnaC, Replicative DNA helicase | Authors: | Nagata, K, Okada, A, Ohtsuka, J, Ohkuri, T, Akama, Y, Sakiyama, Y, Miyazaki, E, Horita, S, Katayama, T, Ueda, T, Tanokura, M. | Deposit date: | 2019-09-23 | Release date: | 2019-11-20 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Crystal structure of the complex of the interaction domains of Escherichia coli DnaB helicase and DnaC helicase loader: structural basis implying a distortion-accumulation mechanism for the DnaB ring opening caused by DnaC binding. J.Biochem., 167, 2020
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