2YVE
 
 | | Crystal structure of the methylene blue-bound form of the multi-drug binding transcriptional repressor CgmR | | Descriptor: | 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM, CHLORIDE ION, GLYCEROL, ... | | Authors: | Itou, H, Shirakihara, Y, Tanaka, I. | | Deposit date: | 2007-04-12 | | Release date: | 2008-04-15 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
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2YVH
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2Z2F
 | | X-ray Crystal Structure of Bovine Stomach Lysozyme | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Lysozyme C-2, SODIUM ION | | Authors: | Akieda, D, Nonaka, Y, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K. | | Deposit date: | 2007-05-21 | | Release date: | 2008-05-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Stability of Bovine Stomach Lysozyme in Acidic Condition
To be Published
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2Z2E
 | | Crystal Structure of Canine Milk Lysozyme Stabilized against Non-enzymatic Deamidation | | Descriptor: | Lysozyme C, milk isozyme, SULFATE ION | | Authors: | Nonaka, Y, Akieda, D, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K. | | Deposit date: | 2007-05-21 | | Release date: | 2007-11-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.01 Å) | | Cite: | Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Proteins, 72, 2008
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2ZOZ
 | | Crystal structure of the ethidium-bound form of the multi-drug binding transcriptional repressor CgmR | | Descriptor: | ETHIDIUM, GLYCEROL, SULFATE ION, ... | | Authors: | Itou, H, Shirakihara, Y, Tanaka, I. | | Deposit date: | 2008-06-20 | | Release date: | 2008-07-08 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
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2ZOY
 | | The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum | | Descriptor: | GLYCEROL, Transcriptional regulator | | Authors: | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2008-06-20 | | Release date: | 2008-07-08 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis
J.Biol.Chem., 280, 2005
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2ZWB
 | | Neutron crystal structure of wild type human lysozyme in D2O | | Descriptor: | Lysozyme C | | Authors: | Chiba-Kamoshida, K, Matsui, T, Chatake, T, Ohhara, T, Ostermann, A, Tanaka, I, Yutani, K, Niimura, N. | | Deposit date: | 2008-12-02 | | Release date: | 2009-12-08 | | Last modified: | 2023-11-01 | | Method: | NEUTRON DIFFRACTION (1.8 Å) | | Cite: | Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme
To be Published
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2ZB9
 | | Crystal structure of TetR family transcription regulator SCO0332 | | Descriptor: | Putative transcriptional regulator | | Authors: | Okada, U, Kondo, K, Watanabe, N, Yao, M, Tanaka, I. | | Deposit date: | 2007-10-16 | | Release date: | 2008-01-29 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | Structural and functional analysis of the TetR-family transcriptional regulator SCO0332 from Streptomyces coelicolor
ACTA CRYSTALLOGR.,SECT.D, 64, 2008
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2ZQ0
 | | Crystal structure of SusB complexed with acarbose | | Descriptor: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase (Alpha-glucosidase SusB), CALCIUM ION | | Authors: | Yao, M, Tanaka, I, Kitamura, M. | | Deposit date: | 2008-07-31 | | Release date: | 2008-10-28 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
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2Z41
 | | Crystal Structure Analysis of the Ski2-type RNA helicase | | Descriptor: | MAGNESIUM ION, putative ski2-type helicase | | Authors: | Nakashima, T, Zhang, X, Kakuta, Y, Yao, M, Tanaka, I, Kimura, M. | | Deposit date: | 2007-06-12 | | Release date: | 2008-04-08 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (3.51 Å) | | Cite: | Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3
Protein Sci., 17, 2008
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2ZU9
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2ZU8
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2ZPP
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2ZOS
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2ZM5
 | | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | | Descriptor: | MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, tRNA(Phe) | | Authors: | Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I. | | Deposit date: | 2008-04-11 | | Release date: | 2009-04-14 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.55 Å) | | Cite: | Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon
Biochemistry, 48, 2009
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2ZCX
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2ZU7
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2ZPA
 | | Crystal Structure of tRNA(Met) Cytidine Acetyltransferase | | Descriptor: | ACETYL COENZYME *A, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, ... | | Authors: | Chimnaronk, S, Manita, T, Yao, M, Tanaka, I. | | Deposit date: | 2008-07-08 | | Release date: | 2009-04-07 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.35 Å) | | Cite: | RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon
Embo J., 28, 2009
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2ZDS
 | | Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2) | | Descriptor: | Putative DNA-binding protein | | Authors: | Begum, P, Gao, Y.G, Sakai, N, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2007-11-27 | | Release date: | 2008-12-02 | | Last modified: | 2019-10-16 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal structure of SCO6571 from Streptomyces coelicolor A3(2).
Protein Pept.Lett., 15, 2008
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3A4K
 | | Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA and divalent cations at 2.17 angstrom resolution | | Descriptor: | ACETATE ION, DNA (5'-D(*GP*CP*CP*A)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), ... | | Authors: | Watanabe, N, Sato, C, Takasaki, Y, Tanaka, I. | | Deposit date: | 2009-07-09 | | Release date: | 2009-10-20 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.17 Å) | | Cite: | Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations
Acta Crystallogr.,Sect.D, 65, 2009
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2ZXU
 | | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | | Descriptor: | DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, ... | | Authors: | Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I. | | Deposit date: | 2009-01-07 | | Release date: | 2009-05-26 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.75 Å) | | Cite: | Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon
Biochemistry, 48, 2009
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2ZZF
 | | Crystal structure of alanyl-tRNA synthetase without oligomerization domain | | Descriptor: | Alanyl-tRNA synthetase, ZINC ION | | Authors: | Sokabe, M, Ose, T, Tokunaga, K, Nakamura, A, Nureki, O, Yao, M, Tanaka, I. | | Deposit date: | 2009-02-10 | | Release date: | 2009-07-21 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | The structure of alanyl-tRNA synthetase with editing domain.
Proc.Natl.Acad.Sci.USA, 106, 2009
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3A1R
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3A7W
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3A88
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