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2CTZ
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BU of 2ctz by Molmil
Crystal structure of o-acetyl homoserine sulfhydrylase from Thermus thermophilus HB8
Descriptor: O-acetyl-L-homoserine sulfhydrylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Imagawa, T, Kousumi, Y, Tsuge, H, Utsunomiya, H, Ebihara, A, Nakagawa, N, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-24
Release date:2005-11-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of o-acetyl homoserine sulfhydrylase from Thermus thermophilus HB8
To be Published
2BGZ
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BU of 2bgz by Molmil
ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.
Descriptor: FLAGELLAR HOOK PROTEIN FLGE
Authors:Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, Derosier, D.J.
Deposit date:2005-01-06
Release date:2005-01-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (9 Å)
Cite:A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
2CB1
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BU of 2cb1 by Molmil
Crystal Structure of O-actetyl Homoserine Sulfhydrylase From Thermus Thermophilus HB8,OAH2.
Descriptor: O-ACETYL HOMOSERINE SULFHYDRYLASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Imagawa, T, Utsunomiya, H, Tsuge, H, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Agari, Y, Kuramitsu, S, Yokoyama, S.
Deposit date:2005-12-28
Release date:2007-01-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of O-Acetyl Homoserine Sulfhydrylase
To be Published
6JZT
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BU of 6jzt by Molmil
Structure of the bacterial flagellar hook from Salmonella typhimurium
Descriptor: Flagellar hook protein FlgE
Authors:Saijo-Hamano, Y, Matsunami, H, Namba, K, Imada, K.
Deposit date:2019-05-03
Release date:2019-07-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Architecture of the Bacterial Flagellar Distal Rod and Hook ofSalmonella.
Biomolecules, 9, 2019
6K3I
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BU of 6k3i by Molmil
Salmonella hook in curved state - 66 subunit models
Descriptor: Flagellar hook protein FlgE
Authors:Shibata, S, Matsunami, H, Wolf, M, Aizawa, S.
Deposit date:2019-05-19
Release date:2019-10-02
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Torque transmission mechanism of the curved bacterial flagellar hook revealed by cryo-EM.
Nat.Struct.Mol.Biol., 26, 2019
6JZR
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BU of 6jzr by Molmil
Structure of the bacterial flagellar polyrod
Descriptor: Flagellar basal-body rod protein FlgG
Authors:Saijo-Hamano, Y, Matsunami, H, Namba, K, Imada, K.
Deposit date:2019-05-03
Release date:2019-07-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Architecture of the Bacterial Flagellar Distal Rod and Hook ofSalmonella.
Biomolecules, 9, 2019
6KMF
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BU of 6kmf by Molmil
FimA type V pilus from P.gingivalis
Descriptor: Major fimbrium subunit FimA type-1
Authors:Shibata, S, Shoji, M, Matsunami, H, Matthews, M, Imada, K, Nakayama, K, Wolf, M.
Deposit date:2019-07-31
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
7VFD
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BU of 7vfd by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2022-04-13
Method:ELECTRON MICROSCOPY (2.25 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFE
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BU of 7vfe by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2022-04-13
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFH
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BU of 7vfh by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2022-04-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFG
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BU of 7vfg by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2022-04-13
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
7VFF
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BU of 7vff by Molmil
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Descriptor: Scaffold protein D13
Authors:Wolf, M, Hyun, J, Matsunami, H, Kim, T.G.
Deposit date:2021-09-13
Release date:2022-02-23
Last modified:2022-04-13
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Assembly mechanism of the pleomorphic immature poxvirus scaffold.
Nat Commun, 13, 2022
2D4Y
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BU of 2d4y by Molmil
Crystal structure of a 49K fragment of HAP1 (FlgK)
Descriptor: Flagellar hook-associated protein 1
Authors:Imada, K, Matsunami, H, Samatey, A.F, Nagashima, S, Namba, K.
Deposit date:2005-10-25
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the bacterial flagellar hook-filament junction
To be Published
2D4X
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BU of 2d4x by Molmil
Crystal structure of a 26K fragment of HAP3 (FlgL)
Descriptor: Flagellar hook-associated protein 3
Authors:Imada, K, Matsunami, H, Samatey, A.F, Nagashima, S, Namba, K.
Deposit date:2005-10-25
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the bacterial flagellar hook-filament junction
To be Published
8JUE
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BU of 8jue by Molmil
Crystal structure of glutaminase C in complex with compound 11
Descriptor: 2-(3-phenoxyphenyl)-N-[5-[[(3R)-1-pyridazin-3-ylpyrrolidin-3-yl]amino]-1,3,4-thiadiazol-2-yl]ethanamide, Glutaminase kidney isoform, mitochondrial
Authors:Wang, X, Hanyu, S, Tingting, D.
Deposit date:2023-06-26
Release date:2023-10-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Targeting the Subpocket Enables the Discovery of Thiadiazole-Pyridazine Derivatives as Glutaminase C Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8JUB
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BU of 8jub by Molmil
Crystal structure of glutaminase C in complex with compound 27
Descriptor: 3-[2-oxidanylidene-2-[[5-[[(3R)-1-pyridazin-3-ylpyrrolidin-3-yl]amino]-1,3,4-thiadiazol-2-yl]amino]ethyl]benzoic acid, Glutaminase kidney isoform, mitochondrial
Authors:Wang, X, Hanyu, S, Tingting, D.
Deposit date:2023-06-26
Release date:2023-10-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Targeting the Subpocket Enables the Discovery of Thiadiazole-Pyridazine Derivatives as Glutaminase C Inhibitors.
Acs Med.Chem.Lett., 14, 2023
5B6I
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BU of 5b6i by Molmil
Structure of fluorinase from Streptomyces sp. MA37
Descriptor: ADENOSINE, Fluorinase, METHIONINE
Authors:Xue, B, Robinson, R.C.
Deposit date:2016-05-29
Release date:2016-10-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Directed Evolution of a Fluorinase for Improved Fluorination Efficiency with a Non-native Substrate
Angew.Chem.Int.Ed.Engl., 55, 2016
8HTU
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BU of 8htu by Molmil
Cryo-EM structure of PpPSI-L
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Li, M, Pan, X.W, Sun, H.Y.
Deposit date:2022-12-21
Release date:2023-08-02
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Structural insights into the assembly and energy transfer of the Lhcb9-dependent photosystem I from moss Physcomitrium patens.
Nat.Plants, 9, 2023
2JK7
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BU of 2jk7 by Molmil
XIAP BIR3 bound to a Smac Mimetic
Descriptor: (3S,6S,7Z,10AS)-N-(DIPHENYLMETHYL)-6-{[(2S)-2-(METHYLIDENEAMINO)BUTANOYL]AMINO}-5-OXO-1,2,3,5,6,9,10,10A-OCTAHYDROPYRROLO[1,2-A]AZOCINE-3-CARBOXAMIDE, BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4, ZINC ION
Authors:Saito, N.G, Meagher, J.L, Stuckey, J.A.
Deposit date:2008-08-21
Release date:2008-11-04
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structure-Based Design, Synthesis, Evaluation, and Crystallographic Studies of Conformationally Constrained Smac Mimetics as Inhibitors of the X-Linked Inhibitor of Apoptosis Protein (Xiap).
J.Med.Chem., 51, 2008
5EC9
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BU of 5ec9 by Molmil
Retinoic acid receptor alpha in complex with chiral dihydrobenzofuran benzoic acid 9a and a fragment of the coactivator TIF2
Descriptor: 4-[(11S,15R)-4,4,7,7-Tetramethyl-16-oxatetracyclo[8.6.0.03,8.011,15]hexadeca-1(10),2,8-trien-11-yl]benzoic acid, LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP, Retinoic acid receptor RXR-alpha
Authors:Leysen, S, Ottmann, C, Schafer, A, Scheepstra, M, Brunsveld, L, Sunden, R, Ma, J.N, Burnstein, E.S, Olsson, R.
Deposit date:2015-10-20
Release date:2016-03-09
Last modified:2022-08-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Chiral Dihydrobenzofuran Acids Show Potent Retinoid X Receptor-Nuclear Receptor Related 1 Protein Dimer Activation.
J.Med.Chem., 59, 2016
5QTT
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BU of 5qtt by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(3R,7S)-7-{[5-amino-1-(3-chloro-2-fluorophenyl)-1H-pyrazole-4-carbonyl]amino}-3-methyl-2-oxo-2,3,4,5,6,7-hexahydro-1H-12,8-(metheno)-1,9-benzodiazacyclotetradecin-15-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2019-10-16
Release date:2019-12-25
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Potent, Orally Bioavailable and Efficacious Macrocyclic Inhibitors of Factor XIa. Discovery of Pyridine-Based Macrocycles Possessing Phenylazole Carboxamide P1 Groups.
J.Med.Chem., 63, 2019
5QTU
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BU of 5qtu by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(3R,7S)-7-{[1-(3-chloro-2-fluorophenyl)-5-methyl-1H-imidazole-4-carbonyl]amino}-3-methyl-2-oxo-2,3,4,5,6,7-hexahydro-1H-12,8-(metheno)-1,9-benzodiazacyclotetradecin-15-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2019-10-16
Release date:2019-12-25
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Potent, Orally Bioavailable and Efficacious Macrocyclic Inhibitors of Factor XIa. Discovery of Pyridine-Based Macrocycles Possessing Phenylazole Carboxamide P1 Groups.
J.Med.Chem., 63, 2019
5QTW
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BU of 5qtw by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl (2R,7S)-7-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-14-[(methoxycarbonyl)amino]-2,3,4,5,6,7-hexahydro-1H-8,11-epimino-1,9-benzodiazacyclotridecine-2-carboxylate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2019-11-13
Release date:2020-01-29
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Orally bioavailable amine-linked macrocyclic inhibitors of factor XIa.
Bioorg.Med.Chem.Lett., 30, 2020
5QTV
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BU of 5qtv by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl [(2R,7S)-7-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-2-(trifluoromethyl)-2,3,4,5,6,7-hexahydro-1H-8,11-epimino-1,9-benzodiazacyclotridecin-14-yl]carbamate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2019-11-13
Release date:2020-01-29
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Orally bioavailable amine-linked macrocyclic inhibitors of factor XIa.
Bioorg.Med.Chem.Lett., 30, 2020
5QTX
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BU of 5qtx by Molmil
FACTOR XIA IN COMPLEX WITH THE INHIBITOR ethyl (2R,7S)-7-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-14-[(methoxycarbonyl)amino]-1,2,3,4,5,6,7,9-octahydro-11,8-(azeno)-1,9-benzodiazacyclotridecine-2-carboxylate
Descriptor: 1,2-ETHANEDIOL, Coagulation factor XI, SULFATE ION, ...
Authors:Sheriff, S.
Deposit date:2019-11-13
Release date:2020-01-29
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Orally bioavailable amine-linked macrocyclic inhibitors of factor XIa.
Bioorg.Med.Chem.Lett., 30, 2020

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