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4U3O
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BU of 4u3o by Molmil
Octameric RNA duplex soaked in manganese(II)chloride
Descriptor: MANGANESE (II) ION, RNA (5'-R(*UP*CP*GP*UP*AP*CP*GP*A)-3')
Authors:Schaffer, M.F, Spingler, B, Schnabl, J, Peng, G, Olieric, V, Sigel, R.K.O.
Deposit date:2014-07-22
Release date:2015-07-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The X-ray Structures of Six Octameric RNA Duplexes in the Presence of Different Di- and Trivalent Cations.
Int J Mol Sci, 17, 2016
2M23
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BU of 2m23 by Molmil
NMR solution structure of the d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1
Descriptor: RNA (29-MER), RNA_(5'-R(*CP*AP*GP*UP*GP*UP*C)-3')_
Authors:Kruschel, D, Skilandat, M, Sigel, R.K.O.
Deposit date:2012-12-12
Release date:2013-12-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of the 5' splice site in the group IIB intron Sc.ai5 gamma--conformational requirements for exon-intron recognition.
Rna, 20, 2014
2M5U
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BU of 2m5u by Molmil
NMR structure of the P4 hairpin of the CPEB3 ribozyme
Descriptor: RNA_(5'-R(*GP*GP*CP*AP*GP*AP*UP*UP*CP*UP*GP*GP*UP*GP*AP*AP*UP*CP*UP*GP*CP*C)-3')
Authors:Skilandat, M, Rowinska-Zyrek, M, Sigel, R.K.O.
Deposit date:2013-03-08
Release date:2014-04-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain.
J.Biol.Inorg.Chem., 19, 2014
2M1V
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BU of 2m1v by Molmil
NMR solution structure of the d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid
Descriptor: DNA_(5'-D(*CP*AP*GP*TP*GP*TP*C)-3')_, RNA (29-MER)
Authors:Skilandat, M, Sigel, R.K.O.
Deposit date:2012-12-07
Release date:2014-06-11
Last modified:2014-08-06
Method:SOLUTION NMR
Cite:The Role of Mg(II) in DNA Cleavage Site Recognition in Group II Intron Ribozymes: SOLUTION STRUCTURE AND METAL ION BINDING SITES OF THE RNADNA COMPLEX.
J.Biol.Chem., 289, 2014
2M24
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BU of 2m24 by Molmil
NMR solution structure of the d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma
Descriptor: RNA (29-MER)
Authors:Kruschel, D, Skilandat, M, Sigel, R.K.O.
Deposit date:2012-12-12
Release date:2013-12-18
Last modified:2014-03-12
Method:SOLUTION NMR
Cite:NMR structure of the 5' splice site in the group IIB intron Sc.ai5 gamma--conformational requirements for exon-intron recognition.
Rna, 20, 2014
2K66
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BU of 2k66 by Molmil
NMR solution structure of the d3'-stem closed by a GAAA tetraloop of the group II intron Sc.ai5(gamma)
Descriptor: 5'-R(*GP*GP*AP*GP*UP*AP*UP*GP*UP*GP*AP*AP*AP*GP*CP*AP*UP*AP*CP*UP*CP*C)-3'
Authors:Kruschel, D, Sigel, R.K.O.
Deposit date:2008-07-04
Release date:2009-07-14
Last modified:2014-03-12
Method:SOLUTION NMR
Cite:NMR structure of the 5' splice site in the group IIB intron Sc.ai5 gamma--conformational requirements for exon-intron recognition.
Rna, 20, 2014
2KE8
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BU of 2ke8 by Molmil
NMR solution structure of metal-modified DNA
Descriptor: DNA (5'-D(*TP*TP*AP*AP*TP*TP*TP*(D33)P*(D33)P*(D33)P*AP*AP*AP*TP*TP*AP*A)-3'), SILVER ION
Authors:Johannsen, S, Duepre, N, Boehme, D, Mueller, J, Sigel, R.K.O.
Deposit date:2009-01-27
Release date:2010-02-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a DNA double helix with consecutive metal-mediated base pairs.
Nat.Chem., 2, 2010
7QR3
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BU of 7qr3 by Molmil
Chimpanzee CPEB3 HDV-like ribozyme
Descriptor: GLYCEROL, POTASSIUM ION, U1 small nuclear ribonucleoprotein A, ...
Authors:Przytula-Mally, A.I, Engilberge, S, Johannsen, S, Olieric, V, Masquida, B, Sigel, R.K.O.
Deposit date:2022-01-10
Release date:2022-10-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Anticodon-like loop-mediated dimerization in the crystal structures of HdV-like CPEB3 ribozymes
Biorxiv, 2022
7QR4
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BU of 7qr4 by Molmil
human CPEB3 HDV-like ribozyme
Descriptor: RNA CPEB3 ribozyme, U1 small nuclear ribonucleoprotein A
Authors:Przytula-Mally, A.I, Engilberge, S, Johannsen, S, Olieric, V, Masquida, B, Sigel, R.K.O.
Deposit date:2022-01-17
Release date:2022-10-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Anticodon-like loop-mediated dimerization in the crystal structures of HdV-like CPEB3 ribozymes
Biorxiv, 2022
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