3AJC
 
 | | Structure of the MC domain of FliG (PEV), a CW-biased mutant | | Descriptor: | Flagellar motor switch protein fliG | | Authors: | Imada, K, Minamino, T, Kinoshita, M, Namba, K. | | Deposit date: | 2010-05-27 | | Release date: | 2011-05-11 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural insight into the rotational switching mechanism of the bacterial flagellar motor
Plos Biol., 9, 2011
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3A5I
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3J0R
 | | Model of a type III secretion system needle based on a 7 Angstrom resolution cryoEM map | | Descriptor: | Protein mxiH | | Authors: | Fujii, T, Cheung, M, Blanco, A, Kato, T, Blocker, A.J, Namba, K. | | Deposit date: | 2011-11-03 | | Release date: | 2012-02-29 | | Last modified: | 2024-02-21 | | Method: | ELECTRON MICROSCOPY (7.7 Å) | | Cite: | Structure of a type III secretion needle at 7-A resolution provides insights into its assembly and signaling mechanisms.
Proc.Natl.Acad.Sci.USA, 109, 2012
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3J82
 | | Electron cryo-microscopy of DNGR-1 in complex with F-actin | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ... | | Authors: | Hanc, P, Fujii, T, Yamada, Y, Huotari, J, Schulz, O, Ahrens, S, Kjaer, S, Way, M, Namba, K, Reis e Sousa, C. | | Deposit date: | 2014-09-25 | | Release date: | 2015-05-20 | | Last modified: | 2019-12-18 | | Method: | ELECTRON MICROSCOPY (7.7 Å) | | Cite: | Structure of the Complex of F-Actin and DNGR-1, a C-Type Lectin Receptor Involved in Dendritic Cell Cross-Presentation of Dead Cell-Associated Antigens.
Immunity, 42, 2015
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1WLG
 | | Crystal structure of FlgE31, a major fragment of the hook protein | | Descriptor: | Flagellar hook protein flgE | | Authors: | Samatey, F.A, Matsunami, H, Imada, K, Nagashima, S, Shaikh, T.R, Thomas, D.R, DeRosier, D.J, Kitao, A, Namba, K. | | Deposit date: | 2004-06-25 | | Release date: | 2004-11-02 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism.
Nature, 431, 2004
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7W2J
 | | Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus | | Descriptor: | FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ... | | Authors: | Suzuki, Y, Makino, F, Miyata, T, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O. | | Deposit date: | 2021-11-24 | | Release date: | 2022-11-30 | | Last modified: | 2023-12-13 | | Method: | ELECTRON MICROSCOPY (3.6 Å) | | Cite: | Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry
Acs Catalysis, 13, 2023
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7WSQ
 | | Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus | | Descriptor: | FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ... | | Authors: | Suzuki, Y, Makino, F, Miyata, T, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O. | | Deposit date: | 2022-02-01 | | Release date: | 2023-02-08 | | Last modified: | 2023-12-13 | | Method: | ELECTRON MICROSCOPY (3.8 Å) | | Cite: | Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry
Acs Catalysis, 13, 2023
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4A6J
 | | Structural model of ParM filament based on CryoEM map | | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PLASMID SEGREGATION PROTEIN PARM | | Authors: | Gayathri, P, Fujii, T, Moller-Jensen, J, Van Den Ent, F, Namba, K, Lowe, J. | | Deposit date: | 2011-11-04 | | Release date: | 2012-11-21 | | Last modified: | 2017-08-23 | | Method: | ELECTRON MICROSCOPY (7.2 Å) | | Cite: | A Bipolar Spindle of Antiparallel Parm Filaments Drives Bacterial Plasmid Segregation.
Science, 338, 2012
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1I7O
 | | CRYSTAL STRUCTURE OF HPCE | | Descriptor: | 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL ISOMERASE/DECARBOXYLASE, CALCIUM ION | | Authors: | Tame, J.R.H, Namba, K, Dodson, E.J, Roper, D.I. | | Deposit date: | 2001-03-10 | | Release date: | 2001-03-28 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | The crystal structure of HpcE, a multi-functional enzyme fold
To be Published
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7CG3
 | | Staggered ring conformation of CtHsp104 (Hsp104 from Chaetomium Thermophilum) | | Descriptor: | Heat shock protein 104 | | Authors: | Inoue, Y, Hanazono, Y, Noi, K, Kawamoto, A, Kimatsuka, M, Harada, R, Takeda, K, Iwamasa, N, Shibata, K, Noguchi, K, Shigeta, Y, Namba, K, Ogura, T, Miki, K, Shinohara, K, Yohda, M. | | Deposit date: | 2020-06-30 | | Release date: | 2021-04-28 | | Last modified: | 2021-07-14 | | Method: | ELECTRON MICROSCOPY (5.1 Å) | | Cite: | Split conformation of Chaetomium thermophilum Hsp104 disaggregase.
Structure, 29, 2021
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2BGZ
 | | ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP. | | Descriptor: | FLAGELLAR HOOK PROTEIN FLGE | | Authors: | Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, Derosier, D.J. | | Deposit date: | 2005-01-06 | | Release date: | 2005-01-27 | | Last modified: | 2017-08-23 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
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2BGY
 | | Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus. | | Descriptor: | FLAGELLAR HOOK PROTEIN FLGE | | Authors: | Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, DeRosier, D.J. | | Deposit date: | 2005-01-06 | | Release date: | 2005-01-27 | | Last modified: | 2020-11-18 | | Method: | ELECTRON MICROSCOPY (20 Å) | | Cite: | A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
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4D3E
 | | Tetramer of IpaD, modified from 2J0O, fitted into negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri | | Descriptor: | INVASIN IPAD | | Authors: | Cheung, M, Shen, D.-K, Makino, F, Kato, T, Roehrich, D, Martinez-Argudo, I, Walker, M.L, Murillo, I, Liu, X, Pain, M, Brown, J, Frazer, G, Mantell, J, Mina, P, Todd, T, Sessions, R.B, Namba, K, Blocker, A.J. | | Deposit date: | 2014-10-21 | | Release date: | 2014-12-10 | | Last modified: | 2020-04-29 | | Method: | ELECTRON MICROSCOPY (2.12 Å) | | Cite: | Three-Dimensional Electron Microscopy Reconstruction and Cysteine-Mediated Crosslinking Provide a Model of the T3Ss Needle Tip Complex.
Mol.Microbiol., 95, 2015
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3A69
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2ZVY
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2ZVZ
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2ZF8
 | | Crystal structure of MotY | | Descriptor: | Component of sodium-driven polar flagellar motor | | Authors: | Imada, K, Kojima, S, Namba, K, Homma, M. | | Deposit date: | 2007-12-25 | | Release date: | 2008-07-08 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.85 Å) | | Cite: | Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY
Proc.Natl.Acad.Sci.Usa, 105, 2008
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2ZOV
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3A7M
 | | Structure of FliT, the flagellar type III chaperone for FliD | | Descriptor: | Flagellar protein fliT | | Authors: | Imada, K, Minamino, T, Kinoshita, M, Namba, K. | | Deposit date: | 2009-09-29 | | Release date: | 2010-04-28 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners.
Proc.Natl.Acad.Sci.USA, 107, 2010
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2D4V
 | | Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans | | Descriptor: | CITRATE ANION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, isocitrate dehydrogenase | | Authors: | Imada, K, Tamura, T, Namba, K, Inagaki, K. | | Deposit date: | 2005-10-24 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity
Proteins, 70, 2008
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3TEE
 | | Crystal Structure of Salmonella FlgA in open form | | Descriptor: | CHLORIDE ION, Flagella basal body P-ring formation protein flgA, GLYCEROL | | Authors: | Matsunami, H, Samatey, F.A, Namba, K. | | Deposit date: | 2011-08-12 | | Release date: | 2012-08-15 | | Last modified: | 2016-07-06 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica
Sci Rep, 6, 2016
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3VKI
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3VJP
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7D84
 | | 34-fold symmetry Salmonella S ring formed by full-length FliF | | Descriptor: | Flagellar M-ring protein | | Authors: | Kawamoto, A, Miyata, T, Makino, F, Kinoshita, M, Minamino, T, Imada, K, Kato, T, Namba, K. | | Deposit date: | 2020-10-07 | | Release date: | 2021-05-19 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (3.7 Å) | | Cite: | Native flagellar MS ring is formed by 34 subunits with 23-fold and 11-fold subsymmetries.
Nat Commun, 12, 2021
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7EH9
 | | Crystal structure of the flagellar hook cap fragment from Salmonella enterica serovar Typhimurium | | Descriptor: | Basal-body rod modification protein FlgD | | Authors: | Matsunami, H, Yoon, Y.-H, Imada, K, Namba, K, Samatey, F.A. | | Deposit date: | 2021-03-29 | | Release date: | 2021-11-24 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structure of the bacterial flagellar hook cap provides insights into a hook assembly mechanism
Commun Biol, 4, 2021
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