2DEM
 
 | | Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA | | 分子名称: | 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*AP*GP*CP*AP*AP*CP*A)-3', DIHYDROGENPHOSPHATE ION, ... | | 著者 | Kosaka, H, Nakagawa, N, Masui, R, Hoseki, J, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-02-13 | | 公開日 | 2007-04-24 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | | 主引用文献 | Crystal structure of family 5 uracil-DNA glycosylase bound to DNA.
J.Mol.Biol., 373, 2007
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2DCN
 | | Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate (alpha-furanose form) | | 分子名称: | 6-O-phosphono-beta-D-psicofuranosonic acid, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | | 著者 | Okazaki, S, Onda, H, Suzuki, A, Kuramitsu, S, Masui, R, Yamane, T. | | 登録日 | 2006-01-10 | | 公開日 | 2006-01-31 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | | 主引用文献 | Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate
To be Published
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2DQB
 | | Crystal structure of dNTP triphosphohydrolase from Thermus thermophilus HB8, which is homologous to dGTP triphosphohydrolase | | 分子名称: | Deoxyguanosinetriphosphate triphosphohydrolase, putative, MAGNESIUM ION | | 著者 | Kondo, N, Nakagawa, N, Ebihara, A, Chen, L, Liu, Z.-J, Wang, B.-C, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-05-25 | | 公開日 | 2007-01-23 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
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2EC2
 | | Crystal structure of transposase from Sulfolobus tokodaii | | 分子名称: | 136aa long hypothetical transposase, SULFATE ION | | 著者 | Kawai, K, Suzuki, A, Kuramitsu, S, Masui, R, Yamane, T. | | 登録日 | 2007-02-09 | | 公開日 | 2007-02-27 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Crystal structure of transposase from Sulfolobus tokodaii
To be Published
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2GGS
 | | crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii | | 分子名称: | 273aa long hypothetical dTDP-4-dehydrorhamnose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Rajakannan, V, Mizushima, T, Suzuki, A, Masui, R, Kuramitsu, S, Yamane, T. | | 登録日 | 2006-03-24 | | 公開日 | 2007-03-24 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii
To be published
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2YVO
 | | Crystal structure of NDX2 in complex with MG2+ and AMP from thermus thermophilus HB8 | | 分子名称: | ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, MutT/nudix family protein | | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-13 | | 公開日 | 2008-02-26 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.67 Å) | | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
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2YYB
 | | Crystal structure of TTHA1606 from Thermus thermophilus HB8 | | 分子名称: | Hypothetical protein TTHA1606 | | 著者 | Tomoike, F, Nakagwa, N, Ebihara, A, Yokoyama, S, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-28 | | 公開日 | 2008-05-06 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8.
Proteins, 76, 2009
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2YVN
 | | Crystal structure of NDX2 from thermus thermophilus HB8 | | 分子名称: | MutT/nudix family protein | | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-13 | | 公開日 | 2008-02-26 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.84 Å) | | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
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2YVP
 | | Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8 | | 分子名称: | MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, MutT/nudix family protein | | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-13 | | 公開日 | 2008-02-26 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
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2YVM
 | | Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8 | | 分子名称: | MAGNESIUM ION, MutT/nudix family protein | | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-13 | | 公開日 | 2008-02-26 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
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2ZQE
 | | Crystal structure of the Smr domain of Thermus thermophilus MutS2 | | 分子名称: | MutS2 protein | | 著者 | Fukui, K, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | | 登録日 | 2008-08-08 | | 公開日 | 2008-09-30 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression
J.Biol.Chem., 283, 2008
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2ZW2
 | | Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS) | | 分子名称: | GLYCEROL, Putative uncharacterized protein STS178 | | 著者 | Suzuki, S, Tamura, S, Okada, K, Baba, S, Kumasaka, T, Nakagawa, N, Masui, R, Kuramitsu, S, Sampei, G, Kawai, G. | | 登録日 | 2008-11-27 | | 公開日 | 2009-11-17 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | | 主引用文献 | Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS)
To be Published
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2ZXO
 | | Crystal structure of RecJ from Thermus thermophilus HB8 | | 分子名称: | Single-stranded DNA specific exonuclease RecJ | | 著者 | Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | | 登録日 | 2009-01-05 | | 公開日 | 2010-01-05 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structure of RecJ exonuclease defines its specificity for single-stranded DNA
J.Biol.Chem., 285, 2010
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2ZXP
 | | Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8 | | 分子名称: | MANGANESE (II) ION, Single-stranded DNA specific exonuclease RecJ | | 著者 | Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | | 登録日 | 2009-01-05 | | 公開日 | 2010-01-05 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structure of RecJ exonuclease defines its specificity for single-stranded DNA
J.Biol.Chem., 285, 2010
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3A4Y
 | | Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8 | | 分子名称: | CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ... | | 著者 | Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2009-07-22 | | 公開日 | 2009-08-04 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
to be published
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2ZXR
 | | Crystal structure of RecJ in complex with Mg2+ from Thermus thermophilus HB8 | | 分子名称: | MAGNESIUM ION, Single-stranded DNA specific exonuclease RecJ | | 著者 | Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | | 登録日 | 2009-01-05 | | 公開日 | 2010-01-05 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | | 主引用文献 | Structure of RecJ exonuclease defines its specificity for single-stranded DNA
J.Biol.Chem., 285, 2010
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3AF6
 | | The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog | | 分子名称: | 5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3', Putative uncharacterized protein PH1404, SULFATE ION, ... | | 著者 | Nishida, Y, Ishikawa, H, Nakagawa, N, Masui, R, Kuramitsu, S. | | 登録日 | 2010-02-24 | | 公開日 | 2010-04-21 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii
Proteins, 78, 2010
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3AF5
 | | The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii | | 分子名称: | ACETIC ACID, Putative uncharacterized protein PH1404, SULFATE ION, ... | | 著者 | Nishida, Y, Ishikawa, H, Nakagawa, N, Masui, R, Kuramitsu, S. | | 登録日 | 2010-02-23 | | 公開日 | 2010-04-21 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii
Proteins, 78, 2010
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3ADR
 | | The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii | | 分子名称: | 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Putative uncharacterized protein ST1585, ... | | 著者 | Shimada, A, Ishikawa, H, Nakagawa, N, Kuramitsu, S, Masui, R. | | 登録日 | 2010-01-28 | | 公開日 | 2010-04-21 | | 最終更新日 | 2017-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii
Proteins, 78, 2010
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3AU6
 | | DNA polymerase X from Thermus thermophilus HB8 ternary complex with primer/template DNA and ddGTP | | 分子名称: | 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*CP*AP*GP*TP*AP*TP*(DDG))-3', 5'-D(*CP*GP*GP*CP*CP*AP*TP*AP*CP*TP*G)-3', ... | | 著者 | Nakane, S, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2011-01-28 | | 公開日 | 2012-01-25 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | | 主引用文献 | The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
J.Mol.Biol., 417, 2012
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3AU2
 | | DNA polymerase X from Thermus thermophilus HB8 complexed with Ca-dGTP | | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... | | 著者 | Nakane, S, Ishikawa, H, Wakamatsu, T, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2011-01-28 | | 公開日 | 2012-01-25 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
J.Mol.Biol., 417, 2012
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3AUO
 | | DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP | | 分子名称: | 1-nt gapped DNA, 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase beta family (X family), ... | | 著者 | Nakane, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2011-02-11 | | 公開日 | 2012-01-25 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
J.Mol.Biol., 417, 2012
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3ASZ
 | | CMP-complex structure of uridine kinase from Thermus thermophilus HB8 | | 分子名称: | CYTIDINE-5'-MONOPHOSPHATE, Uridine kinase | | 著者 | Tomoike, F, Nakagawa, N, Kuramitsu, S, Masui, R. | | 登録日 | 2010-12-22 | | 公開日 | 2011-06-01 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | | 主引用文献 | A Single Amino Acid Limits the Substrate Specificity of Thermus thermophilus Uridine-Cytidine Kinase to Cytidine
Biochemistry, 50, 2011
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3ASY
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3AYT
 | | TTHB071 protein from Thermus thermophilus HB8 | | 分子名称: | Putative uncharacterized protein TTHB071, ZINC ION | | 著者 | Nakane, S, Wakamatsu, T, Fukui, K, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2011-05-17 | | 公開日 | 2011-10-19 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | | 主引用文献 | In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress
J.Biol.Chem., 286, 2011
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