Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1Y8Q
DownloadVisualize
BU of 1y8q by Molmil
SUMO E1 ACTIVATING ENZYME SAE1-SAE2-MG-ATP COMPLEX
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ubiquitin-like 1 activating enzyme E1A, ...
著者Lois, L.M, Lima, C.D.
登録日2004-12-13
公開日2005-01-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1
Embo J., 24, 2005
1Z3C
DownloadVisualize
BU of 1z3c by Molmil
Encephalitozooan cuniculi mRNA Cap (Guanine-N7) Methyltransferasein complexed with AzoAdoMet
分子名称: S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE, mRNA CAPPING ENZYME
著者Hausmann, S, Zhang, S, Fabrega, C, Schneller, S.W, Lima, C.D, Shuman, S.
登録日2005-03-11
公開日2005-03-22
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Encephalitozoon cuniculi mRNA cap (guanine N-7) methyltransferase: methyl acceptor specificity, inhibition BY S-adenosylmethionine analogs, and structure-guided mutational analysis.
J.Biol.Chem., 280, 2005
1Z9D
DownloadVisualize
BU of 1z9d by Molmil
Crystal structure of a putative uridylate kinase (UMP-kinase) from Streptococcus pyogenes
分子名称: SULFATE ION, uridylate kinase
著者Rajashankar, K.R, Kniewel, R, Lee, K, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2005-04-01
公開日2005-04-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of a putative uridylate kinase (UMP-kinase) from Streptococcus pyogenes
To be Published
1Z5S
DownloadVisualize
BU of 1z5s by Molmil
Crystal structure of a complex between UBC9, SUMO-1, RANGAP1 and NUP358/RANBP2
分子名称: Ran GTPase-activating protein 1, Ran-binding protein 2, Ubiquitin-conjugating enzyme E2 I, ...
著者Reverter, D, Lima, C.D.
登録日2005-03-19
公開日2005-06-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex.
Nature, 435, 2005
2A8X
DownloadVisualize
BU of 2a8x by Molmil
Crystal Structure of Lipoamide Dehydrogenase from Mycobacterium tuberculosis
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
著者Rajashankar, K.R, Bryk, R, Kniewel, R, Buglino, J.A, Nathan, C.F, Lima, C.D.
登録日2005-07-10
公開日2005-08-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure and functional analysis of lipoamide dehydrogenase from Mycobacterium tuberculosis
J.Biol.Chem., 280, 2005
2AP9
DownloadVisualize
BU of 2ap9 by Molmil
Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551
分子名称: MAGNESIUM ION, NICKEL (II) ION, acetylglutamate kinase
著者Rajashankar, K.R, Kniewel, R, Lee, K, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2005-08-15
公開日2005-08-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551
To be Published
2AR0
DownloadVisualize
BU of 2ar0 by Molmil
Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI)
分子名称: Type I restriction enzyme EcoKI M protein, UNKNOWN ATOM OR ION
著者Rajashankar, K.R, Kniewel, R, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2005-08-18
公開日2005-08-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI).
To be Published
8DAR
DownloadVisualize
BU of 8dar by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex unbound but in the presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAU
DownloadVisualize
BU of 8dau by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (uA)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAW
DownloadVisualize
BU of 8daw by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uD)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAS
DownloadVisualize
BU of 8das by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intA)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAT
DownloadVisualize
BU of 8dat by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intB)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAV
DownloadVisualize
BU of 8dav by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uC)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
2HVQ
DownloadVisualize
BU of 2hvq by Molmil
Structure of Adenylated full-length T4 RNA Ligase 2
分子名称: Hypothetical 37.6 kDa protein in Gp24-hoc intergenic region, MAGNESIUM ION
著者Nandakumar, J, Lima, C.D.
登録日2006-07-30
公開日2006-10-17
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward.
Cell(Cambridge,Mass.), 127, 2006
2HVS
DownloadVisualize
BU of 2hvs by Molmil
Structure of T4 RNA Ligase 2 with Nicked 5'-Adenylated nucleic acid duplex containing a 2'-deoxyribonucleotide at the nick
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3', 5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3', ...
著者Nandakumar, J, Lima, C.D.
登録日2006-07-30
公開日2006-10-17
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward.
Cell(Cambridge,Mass.), 127, 2006
2HVR
DownloadVisualize
BU of 2hvr by Molmil
Structure of T4 RNA Ligase 2 with Nicked 5'-Adenylated nucleic acid duplex containing a 3'-deoxyribonucleotide at the nick
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3', 5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3', ...
著者Nandakumar, J, Lima, C.D.
登録日2006-07-30
公開日2006-10-17
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward.
Cell(Cambridge,Mass.), 127, 2006
2IO2
DownloadVisualize
BU of 2io2 by Molmil
Crystal structure of human Senp2 in complex with RanGAP1-SUMO-1
分子名称: Ran GTPase-activating protein 1, Sentrin-specific protease 2, Small ubiquitin-related modifier 1
著者Reverter, D, Lima, C.D.
登録日2006-10-09
公開日2006-11-21
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
2IO3
DownloadVisualize
BU of 2io3 by Molmil
Crystal structure of human Senp2 in complex with RanGAP1-SUMO-2
分子名称: Ran GTPase-activating protein 1, Sentrin-specific protease 2, Small ubiquitin-related modifier 2
著者Reverter, D, Lima, C.D.
登録日2006-10-09
公開日2006-11-14
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
2IO0
DownloadVisualize
BU of 2io0 by Molmil
Crystal structure of human Senp2 in complex with preSUMO-2
分子名称: SULFATE ION, Sentrin-specific protease 2, Small ubiquitin-related modifier 2 precursor
著者Reverter, D, Lima, C.D.
登録日2006-10-09
公開日2006-11-14
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
2IO1
DownloadVisualize
BU of 2io1 by Molmil
Crystal structure of human Senp2 in complex with preSUMO-3
分子名称: Sentrin-specific protease 2, Small ubiquitin-related modifier 3 precursor
著者Reverter, D, Lima, C.D.
登録日2006-10-09
公開日2006-11-14
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for SENP2 protease interactions with SUMO precursors and conjugated substrates.
Nat.Struct.Mol.Biol., 13, 2006
1P16
DownloadVisualize
BU of 1p16 by Molmil
Structure of an mRNA capping enzyme bound to the phosphorylated carboxyl-terminal domain of RNA polymerase II
分子名称: GUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, ...
著者Fabrega, C, Shen, V, Shuman, S, Lima, C.D.
登録日2003-04-11
公開日2003-07-15
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of an mRNA capping enzyme bound to the phosphorylated carboxy-terminal domain of RNA polymerase II.
Mol.Cell, 11, 2003
1P1M
DownloadVisualize
BU of 1p1m by Molmil
Structure of Thermotoga maritima amidohydrolase TM0936 bound to Ni and methionine
分子名称: Hypothetical protein TM0936, METHIONINE, NICKEL (II) ION
著者Kniewel, R, Buglino, J.A, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2003-04-12
公開日2003-04-29
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of the hypothetical protein TM0936 from Thermotoga maritima at 1.5A bound to Ni and methionine
To be Published, 2003
1PSW
DownloadVisualize
BU of 1psw by Molmil
Structure of E. coli ADP-heptose lps heptosyltransferase II
分子名称: ADP-HEPTOSE LPS HEPTOSYLTRANSFERASE II
著者Kniewel, R, Buglino, J, Solorzano, V, Wu, J, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2003-06-21
公開日2003-07-08
最終更新日2021-02-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of E. coli ADP-heptose lps heptosyltransferase II
To be Published
1PUJ
DownloadVisualize
BU of 1puj by Molmil
Structure of B. subtilis YlqF GTPase
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, conserved hypothetical protein ylqF
著者Kniewel, R, Buglino, J, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2003-06-24
公開日2003-07-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the YlqF GTPase from B. subtilis
To be Published
1PUG
DownloadVisualize
BU of 1pug by Molmil
Structure of E. coli Ybab
分子名称: Hypothetical UPF0133 protein ybaB
著者Kniewel, R, Buglino, J, Chadna, T, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2003-06-24
公開日2003-07-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of E. coli Ybab
To be Published

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon