7V62
| Crystal structure of human OSBP ORD in complex with cholesterol | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, CHOLESTEROL, CITRIC ACID, ... | Authors: | Kobayashi, J, Kato, R. | Deposit date: | 2021-08-19 | Release date: | 2022-06-08 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.25 Å) | Cite: | Ligand Recognition by the Lipid Transfer Domain of Human OSBP Is Important for Enterovirus Replication. Acs Infect Dis., 8, 2022
|
|
2D0J
| Crystal Structure of Human GlcAT-S Apo Form | Descriptor: | Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 | Authors: | Shiba, T, Kakuda, S, Ishiguro, M, Oka, S, Kawasaki, T, Wakatsuki, S, Kato, R. | Deposit date: | 2005-08-03 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope To be published
|
|
2D3G
| Double sided ubiquitin binding of Hrs-UIM | Descriptor: | ubiquitin, ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase substrate | Authors: | Hirano, S, Kawasaki, M, Kato, R, Wakatsuki, S. | Deposit date: | 2005-09-28 | Release date: | 2005-12-20 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting Nat.Struct.Mol.Biol., 13, 2006
|
|
2D6L
| Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 2) | Descriptor: | lectin, galactose binding, soluble 9 | Authors: | Nagae, M, Nishi, N, Nakamura, T, Wakatsuki, S, Kato, R. | Deposit date: | 2005-11-14 | Release date: | 2006-09-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition J.Biol.Chem., 281, 2006
|
|
2D6K
| Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 1) | Descriptor: | lectin, galactose binding, soluble 9 | Authors: | Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R. | Deposit date: | 2005-11-14 | Release date: | 2006-09-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition J.Biol.Chem., 281, 2006
|
|
2D6M
| Crystal structure of mouse galectin-9 N-terminal CRD in complex with lactose | Descriptor: | beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, lectin, galactose binding, ... | Authors: | Nagae, M, Nishi, N, Nakamura, T, Wakatsuki, S, Kato, R. | Deposit date: | 2005-11-14 | Release date: | 2006-09-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition J.Biol.Chem., 281, 2006
|
|
2D7C
| Crystal structure of human Rab11 in complex with FIP3 Rab-binding domain | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Shiba, T, Koga, H, Shin, H.W, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S. | Deposit date: | 2005-11-16 | Release date: | 2006-09-26 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1. Proc.Natl.Acad.Sci.Usa, 103, 2006
|
|
2D6N
| Crystal structure of mouse galectin-9 N-terminal CRD in complex with N-acetyllactosamine | Descriptor: | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, lectin, galactose binding, ... | Authors: | Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R. | Deposit date: | 2005-11-14 | Release date: | 2006-09-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition J.Biol.Chem., 281, 2006
|
|
2D6O
| Crystal structure of mouse galectin-9 N-terminal CRD in complex with N-acetyllactosamine dimer | Descriptor: | GLYCEROL, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, lectin, ... | Authors: | Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R. | Deposit date: | 2005-11-14 | Release date: | 2006-09-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition J.Biol.Chem., 281, 2006
|
|
2D7I
| Crystal structure of pp-GalNAc-T10 with UDP, GalNAc and Mn2+ | Descriptor: | 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Kubota, T, Shiba, T, Sugioka, S, Kato, R, Wakatsuki, S, Narimatsu, H. | Deposit date: | 2005-11-21 | Release date: | 2006-11-07 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10) J.Mol.Biol., 359, 2006
|
|
2D6P
| Crystal structure of mouse galectin-9 N-terminal CRD in complex with T-antigen | Descriptor: | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, lectin, galactose binding, ... | Authors: | Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R. | Deposit date: | 2005-11-14 | Release date: | 2006-09-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition J.Biol.Chem., 281, 2006
|
|
2D7R
| Crystal structure of pp-GalNAc-T10 complexed with GalNAc-Ser on lectin domain | Descriptor: | 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Kubota, T, Shiba, T, Sugioka, S, Kato, R, Wakatsuki, S, Narimatsu, H. | Deposit date: | 2005-11-25 | Release date: | 2006-11-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10) J.Mol.Biol., 359, 2006
|
|
2DWX
| Co-crystal Structure Analysis of GGA1-GAE with the WNSF motif | Descriptor: | ADP-ribosylation factor-binding protein GGA1, hinge peptide from ADP-ribosylation factor binding protein GGA1 | Authors: | Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S. | Deposit date: | 2006-08-21 | Release date: | 2007-04-17 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1 Traffic, 8, 2007
|
|
2DUO
| Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+-bound form | Descriptor: | CALCIUM ION, CHLORIDE ION, Vesicular integral-membrane protein VIP36 | Authors: | Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S. | Deposit date: | 2006-07-25 | Release date: | 2007-07-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36 J.Biol.Chem., 282, 2007
|
|
2DUR
| Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man2-bound form | Descriptor: | CALCIUM ION, CHLORIDE ION, GLYCEROL, ... | Authors: | Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S. | Deposit date: | 2006-07-25 | Release date: | 2007-07-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36 J.Biol.Chem., 282, 2007
|
|
2DUQ
| Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man-bound form | Descriptor: | CALCIUM ION, CHLORIDE ION, Vesicular integral-membrane protein VIP36, ... | Authors: | Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S. | Deposit date: | 2006-07-25 | Release date: | 2007-07-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36 J.Biol.Chem., 282, 2007
|
|
2DWY
| Crystal Structure Analysis of GGA1-GAE | Descriptor: | ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1 | Authors: | Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S. | Deposit date: | 2006-08-21 | Release date: | 2007-04-17 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1 Traffic, 8, 2007
|
|
2DUP
| Crystal structure of VIP36 exoplasmic/lumenal domain, metal-free form | Descriptor: | CALCIUM ION, CHLORIDE ION, GLYCEROL, ... | Authors: | Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S. | Deposit date: | 2006-07-25 | Release date: | 2007-07-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36 J.Biol.Chem., 282, 2007
|
|
2E3Q
| Crystal structure of CERT START domain in complex with C18-ceramide (P212121) | Descriptor: | DIMETHYL SULFOXIDE, Lipid-transfer protein CERT, N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE | Authors: | Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R. | Deposit date: | 2006-11-28 | Release date: | 2007-12-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide. Proc.Natl.Acad.Sci.Usa, 105, 2008
|
|
2EAD
| Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with substrate | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Alpha-fucosidase, CALCIUM ION, ... | Authors: | Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R. | Deposit date: | 2007-01-31 | Release date: | 2007-04-24 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum J.Biol.Chem., 282, 2007
|
|
2E3P
| Crystal structure of CERT START domain in complex with C16-cearmide (P1) | Descriptor: | Lipid-transfer protein CERT, N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE | Authors: | Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R. | Deposit date: | 2006-11-28 | Release date: | 2007-12-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide. Proc.Natl.Acad.Sci.Usa, 105, 2008
|
|
2E3M
| Crystal structure of CERT START domain | Descriptor: | Lipid-transfer protein CERT | Authors: | Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R. | Deposit date: | 2006-11-28 | Release date: | 2007-12-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide. Proc.Natl.Acad.Sci.Usa, 105, 2008
|
|
2DX5
| The complex structure between the mouse EAP45-GLUE domain and ubiquitin | Descriptor: | Ubiquitin, Vacuolar protein sorting protein 36 | Authors: | Hirano, S, Suzuki, N, Slagsvold, T, Kawasaki, M, Trambaiolo, D, Kato, R, Stenmark, H, Wakatsuki, S. | Deposit date: | 2006-08-24 | Release date: | 2006-10-10 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.35 Å) | Cite: | Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain Nat.Struct.Mol.Biol., 13, 2006
|
|
2DY3
| Crystal Structure of alanine racemase from Corynebacterium glutamicum | Descriptor: | Alanine racemase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Miyaguchi, I, Sasaki, C, Kato, R, Oikawa, T, Sugio, S. | Deposit date: | 2006-09-05 | Release date: | 2007-09-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure of Alanine Racemase from Corynebacterium glutamicum at 2.1 A resolution To be Published
|
|
2EAE
| Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complexes with products | Descriptor: | Alpha-fucosidase, CALCIUM ION, alpha-L-fucopyranose, ... | Authors: | Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R. | Deposit date: | 2007-01-31 | Release date: | 2007-04-24 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum J.Biol.Chem., 282, 2007
|
|