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5Z8X
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BU of 5z8x by Molmil
Crystal structure of human LRRTM2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat transmembrane neuronal protein 2
著者Yamagata, A, Fukai, S.
登録日2018-02-01
公開日2018-10-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
5Z8Y
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BU of 5z8y by Molmil
Crystal structure of human LRRTM2 in complex with Neurexin 1beta
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Yamagata, A, Fukai, S.
登録日2018-02-01
公開日2018-10-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
6IUJ
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BU of 6iuj by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GH30 Xylanase B, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2018-11-28
公開日2019-01-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungusTalaromyces cellulolyticus.
J. Biol. Chem., 294, 2019
6A6I
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BU of 6a6i by Molmil
Crystal structure of the winged-helix domain of Cockayne syndrome group B protein in complex with ubiquitin
分子名称: CHLORIDE ION, Excision repair cross-complementing rodent repair deficiency, complementation group 6 variant, ...
著者Takahashi, T.S, Sato, Y, Fukai, S.
登録日2018-06-28
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis of ubiquitin recognition by the winged-helix domain of Cockayne syndrome group B protein.
Nucleic Acids Res., 47, 2019
3AO9
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BU of 3ao9 by Molmil
Crystal structure of the C-terminal domain of sequence-specific ribonuclease
分子名称: CADMIUM ION, Colicin-E5
著者Inoue, S, Fushinobu, S, Ogawa, T, Hidaka, M, Masaki, H, Yajima, S.
登録日2010-09-22
公開日2011-09-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
3VON
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BU of 3von by Molmil
Crystalstructure of the ubiquitin protease
分子名称: Ubiquitin thioesterase OTUB1, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-conjugating enzyme E2 variant 2
著者Sato, Y, Fukai, S.
登録日2012-01-30
公開日2012-05-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Molecular basis of Lys-63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13.
J.Biol.Chem., 287, 2012
3AJ6
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BU of 3aj6 by Molmil
HA1 (HA33) mutant F179I of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, Main hemagglutinin component
著者Nakamura, T, Tonozuka, T, Sato, R, Oguma, K, Nishikawa, A.
登録日2010-05-24
公開日2011-06-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin
Arch.Biochem.Biophys., 512, 2011
3AJ5
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BU of 3aj5 by Molmil
HA1 (HA33) subcomponent of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, Main hemagglutinin component
著者Nakamura, T, Tonozuka, T, Sato, R, Oguma, K, Nishikawa, A.
登録日2010-05-24
公開日2011-06-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin
Arch.Biochem.Biophys., 512, 2011
3VLC
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BU of 3vlc by Molmil
Crystal structure of S. cerevisiae Get3 in the semi open conformation in complex with Get1 cytosolic domain at 4.5 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, Golgi to ER traffic protein 1
著者Kubota, K, Yamagata, A, Fukai, S.
登録日2011-11-30
公開日2012-06-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
3AZ1
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BU of 3az1 by Molmil
Crystal Structure Analysis of Vitamin D receptor
分子名称: Vitamin D3 receptor, {4-[3-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)pentan-3-yl]-2-methylphenoxy}acetic acid
著者Itoh, S, Iijima, S.
登録日2011-05-20
公開日2011-11-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Novel nonsecosteroidal vitamin D(3) carboxylic acid analogs for osteoporosis, and SAR analysis.
Bioorg.Med.Chem., 19, 2011
3AZ2
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BU of 3az2 by Molmil
Crystal Structure Analysis of Vitamin D receptor
分子名称: 5-{4-[3-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)pentan-3-yl]-2-methylphenoxy}pentanoic acid, Vitamin D3 receptor
著者Itoh, S, Iijima, S.
登録日2011-05-20
公開日2011-11-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Novel nonsecosteroidal vitamin D(3) carboxylic acid analogs for osteoporosis, and SAR analysis.
Bioorg.Med.Chem., 19, 2011
3AZ3
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BU of 3az3 by Molmil
Crystal Structure Analysis of Vitamin D receptor
分子名称: (4S)-4-hydroxy-5-[4-(3-{4-[(3S)-3-hydroxy-4,4-dimethylpentyl]-3-methylphenyl}pentan-3-yl)-2-methylphenoxy]pentanoic acid, Vitamin D3 receptor
著者Itoh, S, Iijima, S.
登録日2011-05-20
公開日2011-11-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Novel nonsecosteroidal vitamin D(3) carboxylic acid analogs for osteoporosis, and SAR analysis.
Bioorg.Med.Chem., 19, 2011
2Z2T
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BU of 2z2t by Molmil
Crystal structure of the complex between gp41 fragment N36 and fusion inhibitor SC34EK
分子名称: ACETIC ACID, Fusion inhibitor peptide SC34EK, SULFATE ION, ...
著者Nakamura, S, Ohkubo, T, Kobayashi, Y.
登録日2007-05-28
公開日2008-06-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Intrahelical Salt-bridges in a-Helical Peptide Enhances its Binding to the Target: A New Design for HIV-1 Fusion Inhibitors
To be Published
3WXE
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BU of 3wxe by Molmil
Crystal structure of CYLD USP domain (C596S) in complex with Met1-linked diubiquitin
分子名称: Ubiquitin, Uncharacterized protein
著者Sato, Y, Fukai, S.
登録日2014-07-30
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity.
Nat.Struct.Mol.Biol., 22, 2015
3WXG
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BU of 3wxg by Molmil
Crystal structure of CYLD USP domain (C596A) in complex with Lys63-linked diubiquitin
分子名称: Ubiquitin, Uncharacterized protein
著者Sato, Y, Fukai, S.
登録日2014-07-30
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity.
Nat.Struct.Mol.Biol., 22, 2015
3WXF
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BU of 3wxf by Molmil
Crystal structure of CYLD USP domain (C596S E674Q) in complex with Met1-linked diubiquitin
分子名称: SULFATE ION, Ubiquitin, Uncharacterized protein
著者Sato, Y, Fukai, S.
登録日2014-07-30
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity.
Nat.Struct.Mol.Biol., 22, 2015
3B2E
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BU of 3b2e by Molmil
Crystal structure of S. cerevisiae Get3 in the open conformation in complex with Get1 cytosolic domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, Golgi to ER traffic protein 1
著者Kubota, K, Yamagata, A, Fukai, S.
登録日2011-07-30
公開日2012-06-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
2E28
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BU of 2e28 by Molmil
Crystal structure analysis of pyruvate kinase from Bacillus stearothermophilus
分子名称: Pyruvate kinase, SULFATE ION
著者Suzuki, K.
登録日2006-11-09
公開日2008-02-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of pyruvate kinase from Geobacillus stearothermophilus.
J.Biochem., 144, 2008
2CZU
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BU of 2czu by Molmil
lipocalin-type prostaglandin D synthase
分子名称: Prostaglandin-H2 D-isomerase
著者Kumasaka, T, Irikura, D, Ago, H, Aritake, K, Yamamoto, M, Inoue, T, Miyano, M, Urade, Y, Hayaishi, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-17
公開日2006-10-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009
2CZT
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BU of 2czt by Molmil
lipocalin-type prostaglandin D synthase
分子名称: Prostaglandin-H2 D-isomerase
著者Kumasaka, T, Irikura, D, Ago, H, Aritake, K, Yamamoto, M, Inoue, T, Miyano, M, Urade, Y, Hayaishi, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-17
公開日2006-10-03
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009
5XEM
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BU of 5xem by Molmil
Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-lanthionine-PLP Schiff base
分子名称: (2R)-2-azanyl-3-[(2R)-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-propanoic acid, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 2-(2-METHOXYETHOXY)ETHANOL, ...
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2017-04-05
公開日2018-04-11
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-lanthionine-PLP Schiff base
To Be Published
5XEO
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BU of 5xeo by Molmil
Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum
分子名称: ACETATE ION, CALCIUM ION, Cysteine synthase, ...
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2017-04-05
公開日2018-04-11
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum
To Be Published
5XEN
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BU of 5xen by Molmil
Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-serine-PLP Schiff base
分子名称: ACETATE ION, CALCIUM ION, Cysteine synthase, ...
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2017-04-05
公開日2018-04-11
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-serine-PLP Schiff base
To Be Published
3B1E
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BU of 3b1e by Molmil
Crystal structure of betaC-S lyase from Streptococcus anginosus in complex with L-serine: alpha-Aminoacrylate form
分子名称: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ...
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2011-06-29
公開日2012-06-27
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural insights into catalysis by beta C-S lyase from Streptococcus anginosus
Proteins, 80, 2012
3B1D
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BU of 3b1d by Molmil
Crystal structure of betaC-S lyase from Streptococcus anginosus in complex with L-serine: External aldimine form
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BetaC-S lyase, PYRIDOXAL-5'-PHOSPHATE, ...
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2011-06-29
公開日2012-06-27
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structural insights into catalysis by beta C-S lyase from Streptococcus anginosus
Proteins, 80, 2012

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