3VI2
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![BU of 3vi2 by Molmil](/molmil-images/mine/3vi2) | Crystal Structure Analysis of Plasmodium falciparum OMP Decarboxylase in complex with inhibitor HMOA | Descriptor: | 4-(2-hydroxy-4-methoxyphenyl)-4-oxobutanoic acid, Orotidine 5'-phosphate decarboxylase, SODIUM ION | Authors: | Takashima, Y, Mizohata, E, Krungkrai, S.R, Matsumura, H, Krungkrai, J, Horii, T, Inoue, T. | Deposit date: | 2011-09-16 | Release date: | 2012-08-01 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase J.Biochem., 152, 2012
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7KHE
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![BU of 7khe by Molmil](/molmil-images/mine/7khe) | Escherichia coli RNA polymerase and rrnBP1 promoter pre-open complex with DksA/ppGpp | Descriptor: | CHAPSO, DNA (46-MER), DNA (54-MER), ... | Authors: | Shin, Y, Qayyum, M.Z, Murakami, K.S. | Deposit date: | 2020-10-21 | Release date: | 2020-12-09 | Last modified: | 2024-03-06 | Method: | ELECTRON MICROSCOPY (3.58 Å) | Cite: | Structural basis of ribosomal RNA transcription regulation. Nat Commun, 12, 2021
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8J6V
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7F36
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![BU of 7f36 by Molmil](/molmil-images/mine/7f36) | TacT complexed with acetyl-glycyl-tRNAGly | Descriptor: | ACETYLAMINO-ACETIC ACID, CALCIUM ION, N-acetyltransferase domain-containing protein, ... | Authors: | Yashiro, Y, Tomita, K. | Deposit date: | 2021-06-15 | Release date: | 2021-12-22 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.098 Å) | Cite: | Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium Cell Rep, 37, 2021
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7F37
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![BU of 7f37 by Molmil](/molmil-images/mine/7f37) | Crystal structure of AtaT2-AtaR2 complex | Descriptor: | DUF1778 domain-containing protein, GNAT family N-acetyltransferase | Authors: | Yashiro, Y, Tomita, K. | Deposit date: | 2021-06-15 | Release date: | 2021-12-22 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.896 Å) | Cite: | Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium Cell Rep, 37, 2021
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7X1L
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![BU of 7x1l by Molmil](/molmil-images/mine/7x1l) | Malate dehydrogenase from Geobacillus stearothermophilus (gs-MDH) delta E311 mutant complexed with Nicotinamide Adenine Dinucleotide (NAD+) | Descriptor: | Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Shimozawa, Y, Himiyama, T, Nakamura, T, Nishiya, Y. | Deposit date: | 2022-02-24 | Release date: | 2022-10-19 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.28 Å) | Cite: | Reducing substrate inhibition of malate dehydrogenase from Geobacillus stearothermophilus by C-terminal truncation. Protein Eng.Des.Sel., 35, 2022
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7KHI
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![BU of 7khi by Molmil](/molmil-images/mine/7khi) | Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp | Descriptor: | CHAPSO, DNA (28-MER), DNA (36-MER), ... | Authors: | Shin, Y, Qayyum, M.Z, Murakami, K.S. | Deposit date: | 2020-10-21 | Release date: | 2020-10-28 | Last modified: | 2024-03-06 | Method: | ELECTRON MICROSCOPY (3.62 Å) | Cite: | Structural basis of ribosomal RNA transcription regulation. Nat Commun, 12, 2021
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7KHB
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![BU of 7khb by Molmil](/molmil-images/mine/7khb) | Escherichia coli RNA polymerase and rrnBP1 promoter open complex | Descriptor: | CHAPSO, DNA (60-MER), DNA (64-MER), ... | Authors: | Shin, Y, Qayyum, M.Z, Murakami, K.S. | Deposit date: | 2020-10-20 | Release date: | 2020-10-28 | Last modified: | 2024-03-06 | Method: | ELECTRON MICROSCOPY (3.53 Å) | Cite: | Structural basis of ribosomal RNA transcription regulation. Nat Commun, 12, 2021
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7KHC
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![BU of 7khc by Molmil](/molmil-images/mine/7khc) | Escherichia coli RNA polymerase and rrnBP1 promoter closed complex | Descriptor: | CHAPSO, DNA (18 MER), DNA (63-MER), ... | Authors: | Shin, Y, Qayyum, M.Z, Murakami, K.S. | Deposit date: | 2020-10-20 | Release date: | 2020-10-28 | Last modified: | 2024-03-06 | Method: | ELECTRON MICROSCOPY (4.14 Å) | Cite: | Structural basis of ribosomal RNA transcription regulation. Nat Commun, 12, 2021
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1UJ8
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![BU of 1uj8 by Molmil](/molmil-images/mine/1uj8) | |
3VYM
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![BU of 3vym by Molmil](/molmil-images/mine/3vym) | Dimeric Hydrogenobacter thermophilus cytochrome c552 | Descriptor: | Cytochrome c-552, HEME C | Authors: | Hayashi, Y, Nagao, S, Osuka, H, Komori, H, Higuchi, Y, Hirota, S. | Deposit date: | 2012-09-28 | Release date: | 2012-11-07 | Last modified: | 2017-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Domain Swapping of the Heme and N-Terminal alpha-Helix in Hydrogenobacter thermophilus Cytochrome c(552) Dimer Biochemistry, 51, 2012
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5ZM4
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![BU of 5zm4 by Molmil](/molmil-images/mine/5zm4) | Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA with preandiloid C | Descriptor: | (6aS,8aR,12aS,12bR,13aR)-5,6a,9,9,12a,13a-hexamethyl-7,8,8a,9,12a,12b,13,13a-octahydro-3H-benzo[a]furo[3,4-j]xanthene-3,4,10(1H,6aH)-trione, 2-OXOGLUTARIC ACID, Dioxygenase andA, ... | Authors: | Nakashima, Y, Senda, T. | Deposit date: | 2018-04-01 | Release date: | 2018-07-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural and Computational Bases for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis. J. Am. Chem. Soc., 140, 2018
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5ZM2
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5ZM3
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![BU of 5zm3 by Molmil](/molmil-images/mine/5zm3) | Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA with preandiloid B | Descriptor: | (6aS,8aR,12aS,12bR,13aR)-5,6a,9,9,12a,13a-hexamethyl-7,8,8a,9,11,12,12a,12b,13,13a-decahydro-3H-benzo[a]furo[3,4-j]xanthene-3,4,10(1H,6aH)-trione, 2-OXOGLUTARIC ACID, Dioxygenase andA, ... | Authors: | Nakashima, Y, Senda, T. | Deposit date: | 2018-04-01 | Release date: | 2018-07-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Structural and Computational Bases for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis. J. Am. Chem. Soc., 140, 2018
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3VMH
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![BU of 3vmh by Molmil](/molmil-images/mine/3vmh) | Oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase | Descriptor: | FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin component of carbazole, ... | Authors: | Ashikawa, Y, Nojiri, H. | Deposit date: | 2011-12-12 | Release date: | 2012-08-22 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase Bmc Struct.Biol., 12, 2012
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3VMG
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![BU of 3vmg by Molmil](/molmil-images/mine/3vmg) | Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase | Descriptor: | 9H-CARBAZOLE, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ashikawa, Y, Nojiri, H. | Deposit date: | 2011-12-12 | Release date: | 2012-08-22 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase Bmc Struct.Biol., 12, 2012
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7C3B
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![BU of 7c3b by Molmil](/molmil-images/mine/7c3b) | Ferredoxin reductase in carbazole 1,9a-dioxygenase (FAD apo form) | Descriptor: | ACETATE ION, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ashikawa, Y, Fujimoto, Z, Nojiri, H. | Deposit date: | 2020-05-11 | Release date: | 2021-05-26 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of the ferredoxin reductase component of carbazole 1,9a-dioxygenase from Janthinobacterium sp. J3. Acta Crystallogr D Struct Biol, 77, 2021
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7C3A
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![BU of 7c3a by Molmil](/molmil-images/mine/7c3a) | Ferredoxin reductase in carbazole 1,9a-dioxygenase | Descriptor: | CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Ashikawa, Y, Fujimoto, Z, Nojiri, H. | Deposit date: | 2020-05-11 | Release date: | 2021-05-26 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structure of the ferredoxin reductase component of carbazole 1,9a-dioxygenase from Janthinobacterium sp. J3. Acta Crystallogr D Struct Biol, 77, 2021
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3VQF
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![BU of 3vqf by Molmil](/molmil-images/mine/3vqf) | Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein | Descriptor: | E3 ubiquitin-protein ligase LNX | Authors: | Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H. | Deposit date: | 2012-03-22 | Release date: | 2013-03-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.199 Å) | Cite: | Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase To be Published
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3VMI
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![BU of 3vmi by Molmil](/molmil-images/mine/3vmi) | Carbazole- and oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase | Descriptor: | 9H-CARBAZOLE, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ashikawa, Y, Nojiri, H. | Deposit date: | 2011-12-12 | Release date: | 2012-08-22 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase Bmc Struct.Biol., 12, 2012
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7DBU
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![BU of 7dbu by Molmil](/molmil-images/mine/7dbu) | Crystal structure of catalytic domain of Anhydrobiosis-related Mn-dependent Peroxidase (AMNP) from Ramazzottius varieornatus (Zn2+-bound form) | Descriptor: | AMNP/g12777, ZINC ION | Authors: | Yoshida, Y, Satoh, T, Ota, C, Tanaka, S, Horikawa, D.D, Tomita, M, Kato, K, Arakawa, K. | Deposit date: | 2020-10-21 | Release date: | 2021-10-06 | Last modified: | 2022-06-15 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades. Bmc Genomics, 23, 2022
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3VQG
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![BU of 3vqg by Molmil](/molmil-images/mine/3vqg) | Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein | Descriptor: | C-terminal peptide from Immunoglobulin superfamily member 5, E3 ubiquitin-protein ligase LNX, SULFATE ION | Authors: | Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H. | Deposit date: | 2012-03-23 | Release date: | 2013-03-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase To be Published
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7EMW
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![BU of 7emw by Molmil](/molmil-images/mine/7emw) | Crystal Structure of the HasAp V37G/K59Q Mutant Capturing Iron Tetraphenylporphyrin | Descriptor: | GLYCEROL, Heme acquisition protein HasAp, [5,10,15,20-tetraphenylporphyrinato(2-)-kappa~4~N~21~,N~22~,N~23~,N~24~]iron | Authors: | Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O. | Deposit date: | 2021-04-14 | Release date: | 2022-04-20 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.12 Å) | Cite: | Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein. Chembiochem, 23, 2022
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7EMQ
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![BU of 7emq by Molmil](/molmil-images/mine/7emq) | Crystal Structure of HasAp Capturing Manganese Tetraphenylporphyrin | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, ... | Authors: | Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O. | Deposit date: | 2021-04-14 | Release date: | 2022-04-20 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein. Chembiochem, 23, 2022
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7EMS
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![BU of 7ems by Molmil](/molmil-images/mine/7ems) | Crystal Structure of the HasAp L85A Mutant Capturing Iron Tetraphenylporphyrin | Descriptor: | GLYCEROL, Heme acquisition protein HasAp, [5,10,15,20-tetraphenylporphyrinato(2-)-kappa~4~N~21~,N~22~,N~23~,N~24~]iron | Authors: | Shisaka, Y, Sugimoto, H, Shoji, O. | Deposit date: | 2021-04-14 | Release date: | 2022-04-20 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein. Chembiochem, 23, 2022
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