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4FP6
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BU of 4fp6 by Molmil
DNA octamer d(gtggccac) with 2'-se modification
Descriptor: CHLORIDE ION, DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3')
Authors:Zhang, W, Sheng, J, Huang, Z.
Deposit date:2012-06-21
Release date:2012-08-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:DNA octamer d(gtggccac) with 2'-se modification
TO BE PUBLISHED
4DSJ
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BU of 4dsj by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ...
Authors:Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
Deposit date:2012-02-19
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
3LTR
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BU of 3ltr by Molmil
5-OMe-dU containing DNA 8mer
Descriptor: 5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3', MAGNESIUM ION
Authors:Sheng, J, Hassan, A.E.A, Zhang, W, Gan, J, Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
8XTR
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BU of 8xtr by Molmil
Comamonas testosteroni KF-1 circularly permuted group II intron 2S state
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (219-MER), ...
Authors:Wang, L, Xie, J.H, Zhang, C, Zou, J, Huang, Z, Shang, S, Chen, X, Yang, Y, Liu, J, Dong, H, Huang, D, Su, Z.
Deposit date:2024-01-11
Release date:2025-02-12
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Structural basis of circularly permuted group II intron self-splicing.
Nat.Struct.Mol.Biol., 32, 2025
9IIK
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BU of 9iik by Molmil
Cryo-EM structure of BTN2A1-BTN3A1-BTN3A2
Descriptor: (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate, Butyrophilin subfamily 2 member A1, Butyrophilin subfamily 3 member A1, ...
Authors:Gao, W, Zheng, J, Zhu, Y, Huang, Z.
Deposit date:2024-06-20
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Cryo-EM structure of BTN2A1-BTN3A1-BTN3A2
To Be Published
9II6
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BU of 9ii6 by Molmil
Cryo-EM structure of the intracellular domains of BTN2A1-BTN3A1-BTN3A3
Descriptor: (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate, Butyrophilin subfamily 2 member A1, Butyrophilin subfamily 3 member A1, ...
Authors:Gao, W, Zheng, J, Zhu, Y, Huang, Z.
Deposit date:2024-06-19
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Cryo-EM structure of the intracellular domains of BTN2A1-BTN3A1-BTN3A3
To Be Published
5X16
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BU of 5x16 by Molmil
Sirt6 apo structure
Descriptor: GLYCEROL, NAD-dependent protein deacetylase sirtuin-6, TERTIARY-BUTYL ALCOHOL, ...
Authors:Zhang, J, Huang, Z, Song, K.
Deposit date:2017-01-24
Release date:2018-07-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Sirt6 apo structure
To Be Published
5WTI
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BU of 5wti by Molmil
Crystal structure of the CRISPR-associated protein in complex with crRNA and DNA
Descriptor: CRISPR-associated protein, DNA (28-MER), DNA (5'-D(P*GP*TP*GP*TP*GP*GP*AP*TP*TP*CP*CP*G)-3'), ...
Authors:Wu, D, Guan, X, Zhu, Y, Huang, Z.
Deposit date:2016-12-13
Release date:2017-11-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.682 Å)
Cite:Structural basis of stringent PAM recognition by CRISPR-C2c1 in complex with sgRNA
Cell Res., 27, 2017
4I1G
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BU of 4i1g by Molmil
dna octamer d(GTseGTACAC) partially crosslinked with two platinums
Descriptor: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3'), PLATINUM (II) ION
Authors:Zhang, W, Coronado, G, Huang, Z.
Deposit date:2012-11-20
Release date:2012-12-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:dna octamer d(GTseGTACAC) partially crosslinked with two platinums
TO BE PUBLISHED
8J7S
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BU of 8j7s by Molmil
Structure of the SPARTA complex
Descriptor: DNA (5'-D(P*TP*AP*AP*TP*AP*GP*AP*TP*TP*AP*GP*AP*GP*CP*CP*GP*TP*CP*AP*AP*TP*AP*GP*A)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*A)-3'), ...
Authors:Guo, M, Zhu, Y, Lin, Z, Huang, Z.
Deposit date:2023-04-28
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Cryo-EM structure of the ssDNA-activated SPARTA complex.
Cell Res., 33, 2023
4JAH
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BU of 4jah by Molmil
Crystal structure of 2-Selenouridine containing RNA
Descriptor: POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*AP*(RUS)P*AP*C)-3')
Authors:Jiang, S, Gan, J, Sun, H, Huang, Z.
Deposit date:2013-02-18
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of 2-Selenouridine containing RNA
To be Published
4H5A
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BU of 4h5a by Molmil
DNA octamer D (GTseGTACAC) partially crosslinked with platinum
Descriptor: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3'), PLATINUM (II) ION
Authors:Zhang, W, Coronado, G, Huang, Z.
Deposit date:2012-09-18
Release date:2012-10-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:DNA octamer D (GTseGTACAC) partially crosslinked with platinum
To be Published
5ID6
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BU of 5id6 by Molmil
Structure of Cpf1/RNA Complex
Descriptor: Cpf1, MAGNESIUM ION, RNA (5'-R(P*AP*AP*UP*UP*UP*CP*UP*AP*CP*UP*AP*AP*GP*UP*GP*UP*AP*GP*AP*UP*C)-3')
Authors:Dong, D, Ren, K, Qiu, X, Wang, J, Huang, Z.
Deposit date:2016-02-24
Release date:2016-04-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.382 Å)
Cite:The crystal structure of Cpf1 in complex with CRISPR RNA
Nature, 532, 2016
4IQS
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BU of 4iqs by Molmil
RNA 8mer duplex modified with 4-Se-Uridine
Descriptor: RNA (5'-R(*GP*UP*GP*(S5)P*AP*CP*AP*C)-3')
Authors:Sheng, J, Gan, J, Soares, A, Huang, Z.
Deposit date:2013-01-13
Release date:2013-12-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom.
Nucleic Acids Res., 41, 2013
4JAB
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BU of 4jab by Molmil
U/G Wobble Base Pair in a RNA Duplex
Descriptor: RNA (5'-R(*GP*UP*GP*UP*AP*UP*AP*C)-3'), STRONTIUM ION
Authors:Jiang, S, Sun, H, Gan, J, Huang, Z.
Deposit date:2013-02-18
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:2-Se Uridine enhanced U/G Wobble Base Pair Discrimination
To be Published
4KW0
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BU of 4kw0 by Molmil
Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(1TW)P*CP*G)-3'), MAGNESIUM ION
Authors:Jiang, S, Gan, J, Sheng, J, Sun, H, Huang, Z.
Deposit date:2013-05-23
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
TO BE PUBLISHED
7WPB
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BU of 7wpb by Molmil
SARS-CoV-2 Omicron Variant RBD complexed with ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, CHLORIDE ION, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPA
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BU of 7wpa by Molmil
SARS-CoV-2 Omicron Variant SPIKE trimer complexed with ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPC
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BU of 7wpc by Molmil
The second RBD of SARS-CoV-2 Omicron Variant in complexed with RBD-ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WP9
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BU of 7wp9 by Molmil
SARS-CoV-2 Omicron Variant SPIKE trimer, all RBDs down
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S, Xu, E.
Deposit date:2022-01-23
Release date:2022-03-09
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPD
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BU of 7wpd by Molmil
SARS-CoV-2 Omicron Variant S Trimer complexed with one JMB2002 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-Fab nanobody, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-23
Release date:2022-03-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPF
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BU of 7wpf by Molmil
SARS-CoV-2 Omicron Variant S Trimer complexed with three JMB2002 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-Fab nanobody, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-23
Release date:2022-03-16
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WPE
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BU of 7wpe by Molmil
SARS-CoV-2 Omicron Variant S Trimer complexed with two JMB2002 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-Fab nanobody, ...
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-23
Release date:2022-03-23
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
7WRV
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BU of 7wrv by Molmil
The interface of JMB2002 Fab binds to SARS-CoV-2 Omicron Variant S
Descriptor: JMB2002 Fab heavy chain, JMB2002 Fab light chain, Spike glycoprotein
Authors:Yin, W, Xu, Y, Xu, P, Cao, X, Wu, C, Gu, C, He, X, Wang, X, Huang, S, Yuan, Q, Wu, K, Hu, W, Huang, Z, Liu, J, Wang, Z, Jia, F, Xia, K, Liu, P, Wang, X, Song, B, Zheng, J, Jiang, H, Cheng, X, Jiang, Y, Deng, S.J, Xu, H.E.
Deposit date:2022-01-27
Release date:2022-03-23
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.47 Å)
Cite:Structures of the Omicron spike trimer with ACE2 and an anti-Omicron antibody.
Science, 375, 2022
9KHW
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BU of 9khw by Molmil
A DNA-stabilized atomically precise silver nanorod with emission at 960 nm
Descriptor: CHLORIDE ION, DNA (5'-D(*CP*CP*GP*CP*GP*CP*GP*CP*GP*CP*CP*GP*CP*GP*AP*A)-3'), SILVER ION
Authors:Kanazawa, H, Kondo, J, Romolini, G, Cerretani, C, Lanza, A, Huang, Z, Vosch, T.
Deposit date:2024-11-11
Release date:2025-04-02
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Shining Bright at 960 nm: A 28-Silver-Atom Nanorod Stabilized by DNA
Small Struct, 2025

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