Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6NRJ
DownloadVisualize
BU of 6nrj by Molmil
Crystal Structure of human PARP-1 ART domain bound to inhibitor UTT93
Descriptor: (2Z)-2-[(4-{[2-(1H-benzimidazol-2-yl)ethyl]carbamoyl}phenyl)methylidene]-3-oxo-2,3-dihydro-1-benzofuran-7-carboxamide, DIMETHYL SULFOXIDE, Poly [ADP-ribose] polymerase 1, ...
Authors:Langelier, M.F, Pascal, J.M.
Deposit date:2019-01-23
Release date:2019-08-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Design and Synthesis of Poly(ADP-ribose) Polymerase Inhibitors: Impact of Adenosine Pocket-Binding Motif Appendage to the 3-Oxo-2,3-dihydrobenzofuran-7-carboxamide on Potency and Selectivity.
J.Med.Chem., 62, 2019
6NRG
DownloadVisualize
BU of 6nrg by Molmil
Crystal Structure of human PARP-1 ART domain bound to inhibitor UTT57
Descriptor: 2-{[3-fluoro-4-(1H-tetrazol-5-yl)phenyl]methyl}-3-hydroxy-1-benzofuran-7-carboxamide, DIMETHYL SULFOXIDE, Poly [ADP-ribose] polymerase 1, ...
Authors:Langelier, M.F, Pascal, J.M.
Deposit date:2019-01-23
Release date:2019-08-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design and Synthesis of Poly(ADP-ribose) Polymerase Inhibitors: Impact of Adenosine Pocket-Binding Motif Appendage to the 3-Oxo-2,3-dihydrobenzofuran-7-carboxamide on Potency and Selectivity.
J.Med.Chem., 62, 2019
6NRF
DownloadVisualize
BU of 6nrf by Molmil
Crystal Structure of human PARP-1 ART domain bound to inhibitor UTT103
Descriptor: 2-({4-[4-(1H-benzimidazol-2-yl)piperazine-1-carbonyl]phenyl}methyl)-3-hydroxy-1-benzofuran-7-carboxamide, CHLORIDE ION, CITRIC ACID, ...
Authors:Langelier, M.F, Pascal, J.M.
Deposit date:2019-01-23
Release date:2019-08-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and Synthesis of Poly(ADP-ribose) Polymerase Inhibitors: Impact of Adenosine Pocket-Binding Motif Appendage to the 3-Oxo-2,3-dihydrobenzofuran-7-carboxamide on Potency and Selectivity.
J.Med.Chem., 62, 2019
6NRI
DownloadVisualize
BU of 6nri by Molmil
Crystal Structure of human PARP-1 ART domain bound to inhibitor UTT83
Descriptor: (2Z)-2-{[4-(3-cyclopropyl-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl)phenyl]methylidene}-3-oxo-2,3-dihydro-1-benzofuran-7-carboxamide, CHLORIDE ION, CITRIC ACID, ...
Authors:Langelier, M.F, Pascal, J.M.
Deposit date:2019-01-23
Release date:2019-08-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design and Synthesis of Poly(ADP-ribose) Polymerase Inhibitors: Impact of Adenosine Pocket-Binding Motif Appendage to the 3-Oxo-2,3-dihydrobenzofuran-7-carboxamide on Potency and Selectivity.
J.Med.Chem., 62, 2019
1HB7
DownloadVisualize
BU of 1hb7 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1 SUS1 MUTANT CAPSID
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-12
Release date:2001-12-05
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (14 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions.
Structure, 9, 2001
9FE6
DownloadVisualize
BU of 9fe6 by Molmil
Short-chain dehydrogenase/reductase (SDR) from Thermus caliditerrae
Descriptor: MAGNESIUM ION, SDR family oxidoreductase
Authors:Kapur, B, Nar, H.
Deposit date:2024-05-17
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.875 Å)
Cite:In silico enzyme screening identifies an SDR ketoreductase from Thermus caliditerrae as an attractive biocatalyst and promising candidate for protein engineering
Front Chem Biol, 2024
9FEB
DownloadVisualize
BU of 9feb by Molmil
Short-chain dehydrogenase/reductase (SDR) from Thermus caliditerrae in complex with NADP
Descriptor: MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SDR family oxidoreductase
Authors:Kapur, B, Nar, H.
Deposit date:2024-05-17
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:In silico enzyme screening identifies an SDR ketoreductase from Thermus caliditerrae as an attractive biocatalyst and promising candidate for protein engineering
Front Chem Biol, 2024
7AHO
DownloadVisualize
BU of 7aho by Molmil
RUVBL1-RUVBL2 heterohexameric ring after binding of RNA helicase DHX34
Descriptor: ADENOSINE-5'-DIPHOSPHATE, RuvB-like 1, RuvB-like 2
Authors:Lopez-Perrote, A, Rodriguez, C.F, Llorca, O.
Deposit date:2020-09-25
Release date:2020-11-25
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:Regulation of RUVBL1-RUVBL2 AAA-ATPases by the nonsense-mediated mRNA decay factor DHX34, as evidenced by Cryo-EM.
Elife, 9, 2020
5JWK
DownloadVisualize
BU of 5jwk by Molmil
Factor Inhibiting HIF D201E in Complex with Fe, and Alpha-Ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, FE (II) ION, ...
Authors:Taabazuing, C.Y, Garman, S.C, Knapp, M.J, Eron, S.
Deposit date:2016-05-12
Release date:2017-05-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Factor Inhibiting HIF D201E in Complex with Fe, and Alpha-Ketoglutarate
To Be Published
5JWL
DownloadVisualize
BU of 5jwl by Molmil
Factor Inhibiting HIF D201E in Complex with Zn, and Alpha-Ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, Hypoxia-inducible factor 1-alpha inhibitor, ...
Authors:Taabazuing, C.Y, Garman, S.C, Eron, S, Knapp, M.J.
Deposit date:2016-05-12
Release date:2017-05-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Factor Inhibiting HIF D201E in Complex with Zn, and Alpha-Ketoglutarate
To Be Published
8BFR
DownloadVisualize
BU of 8bfr by Molmil
The E. coli TrpD2 protein YbiB at 1.3 A resolution
Descriptor: GLYCEROL, Protein YbiB
Authors:Deckers, B, Galicia, C, Versees, W.
Deposit date:2022-10-26
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:YbiB: a novel interactor of the GTPase ObgE.
Nucleic Acids Res., 51, 2023
8BFT
DownloadVisualize
BU of 8bft by Molmil
The E. coli TrpD2 protein YbiB in complex with a C-terminal peptide from ObgE
Descriptor: DI(HYDROXYETHYL)ETHER, GTPase ObgE/CgtA, Protein YbiB
Authors:Deckers, B, Galicia, C, Versees, W.
Deposit date:2022-10-26
Release date:2023-02-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:YbiB: a novel interactor of the GTPase ObgE.
Nucleic Acids Res., 51, 2023
5G5N
DownloadVisualize
BU of 5g5n by Molmil
Structure of the snake adenovirus 1 hexon-interlacing LH3 protein, methylmercury chloride derivative
Descriptor: CHLORIDE ION, GLYCEROL, LH3 HEXON-INTERLACING CAPSID PROTEIN, ...
Authors:Nguyen, T.H, Singh, A.K, Albala-Perez, B, van Raaij, M.J.
Deposit date:2016-05-26
Release date:2017-06-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a Reptilian Adenovirus Reveals a Phage Tailspike Fold Stabilizing a Vertebrate Virus Capsid.
Structure, 25, 2017
5G5O
DownloadVisualize
BU of 5g5o by Molmil
Structure of the snake adenovirus 1 hexon-interlacing LH3 protein, native
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Nguyen, T.H, Singh, A.K, Albala-Perez, B, van Raaij, M.J.
Deposit date:2016-05-26
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a Reptilian Adenovirus Reveals a Phage Tailspike Fold Stabilizing a Vertebrate Virus Capsid.
Structure, 25, 2017
4KCG
DownloadVisualize
BU of 4kcg by Molmil
Human dCK C4S-S74E mutant in complex with UDP and the DI-39 inhibitor
Descriptor: Deoxycytidine kinase, N-{2-[5-(4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-1,3-thiazol-2-yl)-2-methoxyphenoxy]ethyl}methanesulfonamide, URIDINE-5'-DIPHOSPHATE
Authors:Nomme, J, Lavie, A.
Deposit date:2013-04-24
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Co-targeting of convergent nucleotide biosynthetic pathways for leukemia eradication.
J.Exp.Med., 211, 2014
6GY2
DownloadVisualize
BU of 6gy2 by Molmil
Crystal structure of human Plk1-PBD in complex with WSSSLATPPTLSSpTVLI phosphopeptide from BRCA2
Descriptor: GLYCEROL, Phosphopeptide of BRCA2, Serine/threonine-protein kinase PLK1
Authors:Miron, S, Ropars, V, Zinn-Justin, S.
Deposit date:2018-06-28
Release date:2019-07-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Proper chromosome alignment depends on BRCA2 phosphorylation by PLK1.
Nat Commun, 11, 2020
7OOK
DownloadVisualize
BU of 7ook by Molmil
Bacteriophage PRD1 Major Capsid Protein P3 in complex with CPZ
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine, CHLORIDE ION, ...
Authors:Duyvesteyn, H.M.E, Peccati, F, Martinez-Castillo, A, Jimenez-Oses, G, Oksanen, H.M, Stuart, D.I, Abrescia, N.G.A.
Deposit date:2021-05-27
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Bacteriophage PRD1 as a nanoscaffold for drug loading
Nanoscale, 13, 2021
4D1G
DownloadVisualize
BU of 4d1g by Molmil
Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, second P212121 crystal form
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, FIBER PROTEIN, SULFATE ION
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2014-05-01
Release date:2014-12-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the fibre head domain of the Atadenovirus Snake Adenovirus 1.
PLoS ONE, 9, 2014
4D0U
DownloadVisualize
BU of 4d0u by Molmil
Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, selenomethionine-derivative
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, FIBER PROTEIN, SULFATE ION
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2014-04-30
Release date:2014-12-17
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the fibre head domain of the Atadenovirus Snake Adenovirus 1.
PLoS ONE, 9, 2014
4D0V
DownloadVisualize
BU of 4d0v by Molmil
Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, I213 crystal form
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, FIBER PROTEIN, SULFATE ION
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2014-04-30
Release date:2014-12-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the fibre head domain of the Atadenovirus Snake Adenovirus 1.
PLoS ONE, 9, 2014
4D1F
DownloadVisualize
BU of 4d1f by Molmil
Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, first P212121 crystal form
Descriptor: FIBER PROTEIN, GLYCEROL
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2014-05-01
Release date:2014-12-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the fibre head domain of the Atadenovirus Snake Adenovirus 1.
PLoS ONE, 9, 2014
5KL0
DownloadVisualize
BU of 5kl0 by Molmil
Crystal Structure of Phosphoglucomutase from Xanthomonas citri citri complexed with Glucose-1,6-biphosphate
Descriptor: 1,6-di-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, Phosphoglucomutase
Authors:Goto, L.S, Pereira, H.M, Novo Mansur, M.T.M.
Deposit date:2016-06-23
Release date:2016-07-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.853 Å)
Cite:Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
Biochim.Biophys.Acta, 1864, 2016
1ETH
DownloadVisualize
BU of 1eth by Molmil
TRIACYLGLYCEROL LIPASE/COLIPASE COMPLEX
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, BETA-MERCAPTOETHANOL, CALCIUM ION, ...
Authors:Hermoso, J, Pignol, D, Kerfelec, B, Crenon, I, Chapus, C, Fontecilla-Camps, J.C.
Deposit date:1995-09-13
Release date:1996-12-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Lipase activation by nonionic detergents. The crystal structure of the porcine lipase-colipase-tetraethylene glycol monooctyl ether complex.
J.Biol.Chem., 271, 1996
5BMN
DownloadVisualize
BU of 5bmn by Molmil
Crystal Structure of APO form of Phosphoglucomutase from Xanthomonas citri
Descriptor: MAGNESIUM ION, Phosphoglucomutase
Authors:Goto, L.S, Pereira, H.M, Novo Mansur, M.T.M, Brandao-Neto, J.
Deposit date:2015-05-22
Release date:2016-06-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
Biochim.Biophys.Acta, 1864, 2016
5BMP
DownloadVisualize
BU of 5bmp by Molmil
Crystal Structure of Phosphoglucomutase from Xanthomonas citri complexed with glucose-1-phosphate
Descriptor: 1-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, Phosphoglucomutase
Authors:Goto, L.S, Pereira, H.M, Novo Mansur, M.T.M.
Deposit date:2015-05-22
Release date:2016-06-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
Biochim.Biophys.Acta, 1864, 2016

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon