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2Z6F
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BU of 2z6f by Molmil
Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme
Descriptor: Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tanaka, Y, Suenaga, A, Tsumoto, K.
Deposit date:2007-07-31
Release date:2008-07-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem., 283, 2008
2D5W
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BU of 2d5w by Molmil
The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide
Descriptor: pentapeptide A, pentapeptide B, peptide ABC transporter, ...
Authors:Morita, A.
Deposit date:2005-11-07
Release date:2006-10-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The crystal structure of oligopeptide binding protein from Thermus thermophilus HB8 complexed with pentapeptide
To be Published
2DI3
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BU of 2di3 by Molmil
Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum
Descriptor: Bacterial regulatory proteins, GntR family, ZINC ION
Authors:Gao, Y.G, Yao, M, Tanaka, I.
Deposit date:2006-03-28
Release date:2007-03-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Res., 36, 2008
7W51
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BU of 7w51 by Molmil
Crystal structure of fragmin domain-1 in complex with actin (ADP-form)
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
Authors:Takeda, S.
Deposit date:2021-11-29
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W50
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BU of 7w50 by Molmil
Crystal structure of fragmin domain-1 in complex with actin (ADP-Pi-form)
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
Authors:Takeda, S.
Deposit date:2021-11-29
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W4Z
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BU of 7w4z by Molmil
Crystal structure of fragmin domain-1 in complex with actin (AMPPNP-form)
Descriptor: 1,2-ETHANEDIOL, Actin, alpha skeletal muscle, ...
Authors:Takeda, S.
Deposit date:2021-11-29
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W52
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BU of 7w52 by Molmil
Crystal structure of fragmin domain-1 (15-160) in complex with actin
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Takeda, S.
Deposit date:2021-11-29
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7YNE
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BU of 7yne by Molmil
Crystal structure of fragmin domain-1 (1-160) in complex with G-form actin
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Takeda, S.
Deposit date:2022-07-30
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
2ZKL
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BU of 2zkl by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
Descriptor: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
Authors:Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K.
Deposit date:2008-03-25
Release date:2009-03-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
2DDX
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BU of 2ddx by Molmil
Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4
Descriptor: GLYCEROL, MAGNESIUM ION, beta-1,3-xylanase
Authors:Sakaguchi, K.
Deposit date:2006-02-06
Release date:2007-02-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Atomic resolution analysis of beta-1,3-xylanase catalytic module from Vibrio sp. AX-4
To be Published
2D5A
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BU of 2d5a by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
Descriptor: COENZYME A, hypothetical protein PH1109
Authors:Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-31
Release date:2006-10-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2D59
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BU of 2d59 by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
Descriptor: hypothetical protein PH1109
Authors:Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-31
Release date:2006-10-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2ZOZ
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BU of 2zoz by Molmil
Crystal structure of the ethidium-bound form of the multi-drug binding transcriptional repressor CgmR
Descriptor: ETHIDIUM, GLYCEROL, SULFATE ION, ...
Authors:Itou, H, Shirakihara, Y, Tanaka, I.
Deposit date:2008-06-20
Release date:2008-07-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2D5K
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BU of 2d5k by Molmil
Crystal structure of Dps from Staphylococcus aureus
Descriptor: Dps family protein, GLYCEROL
Authors:Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I.
Deposit date:2005-11-02
Release date:2006-10-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages
FEMS Microbiol. Lett., 360, 2014
6J6U
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BU of 6j6u by Molmil
Rat PTPRZ D1-D2 domain
Descriptor: Receptor-type tyrosine-protein phosphatase zeta
Authors:Sugawara, H.
Deposit date:2019-01-15
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:A head-to-toe dimerization has physiological relevance for ligand-induced inactivation of protein tyrosine receptor type Z.
J.Biol.Chem., 294, 2019
1WV3
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BU of 1wv3 by Molmil
Crystal structure of N-terminal domain of hypothetical protein SAV0287 from Staphylococcus aureus
Descriptor: CHLORIDE ION, similar to DNA segregation ATPase and related proteins
Authors:Tanaka, Y, Yasutake, Y, Tanaka, I.
Deposit date:2004-12-10
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
3VUA
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BU of 3vua by Molmil
Apo IsdH-NEAT3 in space group P3121 at a resolution of 1.85 A
Descriptor: ACETATE ION, GLYCEROL, Iron-regulated surface determinant protein H, ...
Authors:Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K.
Deposit date:2012-06-26
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
To be Published
3VTM
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BU of 3vtm by Molmil
Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
Descriptor: GLYCEROL, Iron-regulated surface determinant protein H, PROTOPORPHYRIN IX CONTAINING INDIUM
Authors:Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K.
Deposit date:2012-05-31
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Selective binding of antimicrobial porphyrins to the heme-receptor IsdH-NEAT3 of Staphylococcus aureus
Protein Sci., 22, 2013
7ZOI
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BU of 7zoi by Molmil
Carbohydrate binding domain CBM92-A from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588
Descriptor: Glycoside hydrolase family 18
Authors:Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
Deposit date:2022-04-25
Release date:2023-05-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZOO
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BU of 7zoo by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with gentiobiose
Descriptor: Glycoside hydrolase family 18, beta-D-glucopyranose
Authors:Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
Deposit date:2022-04-26
Release date:2023-05-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZON
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BU of 7zon by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with glucose
Descriptor: Glycoside hydrolase family 18, PENTAETHYLENE GLYCOL, beta-D-glucopyranose
Authors:Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
Deposit date:2022-04-26
Release date:2023-05-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZOH
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BU of 7zoh by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588
Descriptor: Glycoside hydrolase family 18
Authors:Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
Deposit date:2022-04-25
Release date:2023-05-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZOP
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BU of 7zop by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with sophorose.
Descriptor: Glycoside hydrolase family 18, beta-D-glucopyranose
Authors:Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
Deposit date:2022-04-26
Release date:2023-05-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
8A64
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BU of 8a64 by Molmil
cryoEM structure of the catalytically inactive EndoS from S. pyogenes in complex with the Fc region of immunoglobulin G1.
Descriptor: Endo-beta-N-acetylglucosaminidase F2, Immunoglobulin gamma-1 heavy chain, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Trastoy, B, Cifuente, J.O, Du, J.J, Sundberg, E.J, Guerin, M.E.
Deposit date:2022-06-16
Release date:2023-04-05
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases.
Nat Commun, 14, 2023
6WPU
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BU of 6wpu by Molmil
Structure of S-allyl-L-cysteine S-oxygenase from Allium sativum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-containing monooxygenase, SULFATE ION
Authors:Tanner, J.J, Campbell, A.C, Schuermann, J.P.
Deposit date:2020-04-27
Release date:2020-06-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.084 Å)
Cite:Structure and function of a flavin-dependent S-monooxygenase from garlic (Allium sativum).
J.Biol.Chem., 295, 2020

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