3HGN
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![BU of 3hgn by Molmil](/molmil-images/mine/3hgn) | Structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor FR130180 determined by neutron crystallography | Descriptor: | 4-[[(2S)-3-methyl-1-oxo-1-[(2S)-2-[[(3S)-1,1,1-trifluoro-4-methyl-2-oxo-pentan-3-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamoyl]benzoic acid, CALCIUM ION, Elastase-1, ... | Authors: | Tamada, T, Kinoshita, T, Kuroki, R, Tada, T. | Deposit date: | 2009-05-14 | Release date: | 2009-07-28 | Last modified: | 2023-11-01 | Method: | NEUTRON DIFFRACTION (1.65 Å), X-RAY DIFFRACTION | Cite: | Combined High-Resolution Neutron and X-ray Analysis of Inhibited Elastase Confirms the Active-Site Oxyanion Hole but Rules against a Low-Barrier Hydrogen Bond J.Am.Chem.Soc., 131, 2009
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2D9Q
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![BU of 2d9q by Molmil](/molmil-images/mine/2d9q) | Crystal Structure of the Human GCSF-Receptor Signaling Complex | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CSF3, Granulocyte colony-stimulating factor receptor | Authors: | Tamada, T, Kuroki, R. | Deposit date: | 2005-12-12 | Release date: | 2006-02-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Homodimeric cross-over structure of the human granulocyte colony-stimulating factor (GCSF) receptor signaling complex Proc.Natl.Acad.Sci.Usa, 103, 2006
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3HGP
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![BU of 3hgp by Molmil](/molmil-images/mine/3hgp) | Structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor FR130180 determined by high resolution crystallography | Descriptor: | 4-[[(2S)-3-methyl-1-oxo-1-[(2S)-2-[[(3S)-1,1,1-trifluoro-4-methyl-2-oxo-pentan-3-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamoyl]benzoic acid, CALCIUM ION, Elastase-1, ... | Authors: | Tamada, T, Kinoshita, T, Kuroki, R, Tada, T. | Deposit date: | 2009-05-14 | Release date: | 2009-07-28 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (0.94 Å) | Cite: | Combined High-Resolution Neutron and X-ray Analysis of Inhibited Elastase Confirms the Active-Site Oxyanion Hole but Rules against a Low-Barrier Hydrogen Bond J.Am.Chem.Soc., 131, 2009
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1IUQ
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![BU of 1iuq by Molmil](/molmil-images/mine/1iuq) | The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase | Descriptor: | GLYCEROL, Glycerol-3-Phosphate Acyltransferase, SULFATE ION | Authors: | Tamada, T, Feese, M.D, Kato, Y, Kuroki, R. | Deposit date: | 2002-03-06 | Release date: | 2003-10-07 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea. Acta Crystallogr.,Sect.D, 60, 2004
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3X3G
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![BU of 3x3g by Molmil](/molmil-images/mine/3x3g) | Fab fragment from anti TRAIL-R2 Human Agonist Antibody KMTR2 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Heavy chain of KMTR2, ... | Authors: | Tamada, T. | Deposit date: | 2015-01-20 | Release date: | 2015-12-23 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.51 Å) | Cite: | TRAIL-R2 Superoligomerization Induced by Human Monoclonal Agonistic Antibody KMTR2 Sci Rep, 5, 2015
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3X3F
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![BU of 3x3f by Molmil](/molmil-images/mine/3x3f) | |
7CQY
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![BU of 7cqy by Molmil](/molmil-images/mine/7cqy) | |
7XE6
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![BU of 7xe6 by Molmil](/molmil-images/mine/7xe6) | T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, pH7 | Descriptor: | Endolysin, GLYCEROL, HEXANE-1,6-DIOL, ... | Authors: | Tamada, T, Hiromoto, T. | Deposit date: | 2022-03-30 | Release date: | 2023-03-22 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions. Front Mol Biosci, 9, 2022
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7XEA
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![BU of 7xea by Molmil](/molmil-images/mine/7xea) | T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, DMSO 40%, and then backsoaking | Descriptor: | CHLORIDE ION, Endolysin, GLYCEROL, ... | Authors: | Tamada, T, Hiromoto, T. | Deposit date: | 2022-03-30 | Release date: | 2023-03-22 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions. Front Mol Biosci, 9, 2022
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7XE7
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![BU of 7xe7 by Molmil](/molmil-images/mine/7xe7) | T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, pH10 | Descriptor: | Endolysin, GLYCEROL, HEXANE-1,6-DIOL | Authors: | Tamada, T, Hiromoto, T. | Deposit date: | 2022-03-30 | Release date: | 2023-03-22 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.05 Å) | Cite: | Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions. Front Mol Biosci, 9, 2022
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7XE9
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![BU of 7xe9 by Molmil](/molmil-images/mine/7xe9) | T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, DMSO 20% | Descriptor: | CHLORIDE ION, DIMETHYL SULFOXIDE, Endolysin, ... | Authors: | Tamada, T, Hiromoto, T. | Deposit date: | 2022-03-30 | Release date: | 2023-03-22 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions. Front Mol Biosci, 9, 2022
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7XE5
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![BU of 7xe5 by Molmil](/molmil-images/mine/7xe5) | T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, pH4 | Descriptor: | Endolysin, GLYCEROL, HEXANE-1,6-DIOL, ... | Authors: | Tamada, T, Hiromoto, T. | Deposit date: | 2022-03-30 | Release date: | 2023-03-22 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions. Front Mol Biosci, 9, 2022
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1IV7
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![BU of 1iv7 by Molmil](/molmil-images/mine/1iv7) | |
1IV9
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![BU of 1iv9 by Molmil](/molmil-images/mine/1iv9) | |
6L8A
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![BU of 6l8a by Molmil](/molmil-images/mine/6l8a) | Tetrathionate hydrolase from Acidithiobacillus ferrooxidans | Descriptor: | BETA-ALANINE, GLYCINE, SULFATE ION, ... | Authors: | Tamada, T, Hirano, Y. | Deposit date: | 2019-11-05 | Release date: | 2020-11-11 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.95004809 Å) | Cite: | Reaction mechanism of tetrathionate hydrolysis based on the crystal structure of tetrathionate hydrolase from Acidithiobacillus ferrooxidans. Protein Sci., 30, 2020
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5ZCR
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![BU of 5zcr by Molmil](/molmil-images/mine/5zcr) | DSM5389 glycosyltrehalose synthase | Descriptor: | GLYCEROL, MAGNESIUM ION, Maltooligosyl trehalose synthase | Authors: | Tamada, T, Okazaki, N. | Deposit date: | 2018-02-20 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of glycosyltrehalose synthase from Sulfolobus shibatae DSM5389 Acta Crystallogr F Struct Biol Commun, 74, 2018
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2ZIJ
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2ZIK
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2ZIL
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![BU of 2zil by Molmil](/molmil-images/mine/2zil) | Crystal Structure of Human Lysozyme from Urine | Descriptor: | Lysozyme C, SODIUM ION | Authors: | Tamada, T, Kuroki, R, Koshiba, T. | Deposit date: | 2008-02-18 | Release date: | 2009-01-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Preparation and characterization of methyonyl-lysine attached human lysozyme expressed in Escherichia coli and its effective conversion to the authentic-like protein To be Published
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1EH9
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![BU of 1eh9 by Molmil](/molmil-images/mine/1eh9) | CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS GLYCOSYLTREHALOSE TREHALOHYDROLASE | Descriptor: | GLYCOSYLTREHALOSE TREHALOHYDROLASE | Authors: | Feese, M.D, Kato, Y, Tamada, T, Kato, M, Komeda, T, Kobayashi, K, Kuroki, R. | Deposit date: | 2000-02-19 | Release date: | 2001-02-19 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Crystal structure of glycosyltrehalose trehalohydrolase from the hyperthermophilic archaeum Sulfolobus solfataricus. J.Mol.Biol., 301, 2000
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8IHW
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![BU of 8ihw by Molmil](/molmil-images/mine/8ihw) | X-ray crystal structure of D43R mutant of endo-1,4-beta glucanase from Eisenia fetida | Descriptor: | CALCIUM ION, Endoglucanase, GLYCEROL, ... | Authors: | Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. | Deposit date: | 2023-02-24 | Release date: | 2023-12-06 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
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8IHX
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![BU of 8ihx by Molmil](/molmil-images/mine/8ihx) | X-ray crystal structure of N372D mutant of endo-1,4-beta glucanase from Eisenia fetida | Descriptor: | CALCIUM ION, Endoglucanase, GLYCEROL, ... | Authors: | Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. | Deposit date: | 2023-02-24 | Release date: | 2023-12-06 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
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8IHY
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![BU of 8ihy by Molmil](/molmil-images/mine/8ihy) | X-ray crystal structure of Q387E mutant of endo-1,4-beta glucanase from Eisenia fetida | Descriptor: | CALCIUM ION, Endoglucanase, GLYCEROL, ... | Authors: | Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. | Deposit date: | 2023-02-24 | Release date: | 2023-12-06 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
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8W6X
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![BU of 8w6x by Molmil](/molmil-images/mine/8w6x) | Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, FE3-S4 CLUSTER, ... | Authors: | Hiromoto, T, Tamada, T. | Deposit date: | 2023-08-30 | Release date: | 2023-09-13 | Last modified: | 2023-11-15 | Method: | NEUTRON DIFFRACTION (1.04 Å), X-RAY DIFFRACTION | Cite: | New insights into the oxidation process from neutron and X-ray crystal structures of an O 2 -sensitive [NiFe]-hydrogenase. Chem Sci, 14, 2023
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6L46
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![BU of 6l46 by Molmil](/molmil-images/mine/6l46) | High-resolution neutron and X-ray joint refined structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, COPPER (II) ION, ... | Authors: | Fukuda, Y, Hirano, Y, Kusaka, K, Inoue, T, Tamada, T. | Deposit date: | 2019-10-16 | Release date: | 2020-02-12 | Last modified: | 2024-04-03 | Method: | NEUTRON DIFFRACTION (1.3 Å), X-RAY DIFFRACTION | Cite: | High-resolution neutron crystallography visualizes an OH-bound resting state of a copper-containing nitrite reductase. Proc.Natl.Acad.Sci.USA, 117, 2020
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