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2ZDT
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BU of 2zdt by Molmil
Crystal Structure of human JNK3 complexed with an isoquinolone inhibitor
Descriptor: 4-[(6-chloro-1-oxo-4-phenyl-3-propanoylisoquinolin-2(1H)-yl)methyl]benzoic acid, GLYCEROL, Mitogen-activated protein kinase 10
Authors:Sogabe, S, Asano, Y, Fukumoto, S, Habuka, N, Fujishima, A.
Deposit date:2007-11-27
Release date:2008-09-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery, synthesis and biological evaluation of isoquinolones as novel and highly selective JNK inhibitors (2)
Bioorg.Med.Chem., 16, 2008
1J2A
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BU of 1j2a by Molmil
Structure of E. coli cyclophilin B K163T mutant
Descriptor: cyclophilin B
Authors:Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H.
Deposit date:2002-12-26
Release date:2004-02-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
1V9T
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BU of 1v9t by Molmil
Structure of E. coli cyclophilin B K163T mutant bound to succinyl-ALA-PRO-ALA-P-nitroanilide
Descriptor: (SIN)APA(NIT), cyclophilin B
Authors:Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H.
Deposit date:2004-02-03
Release date:2004-09-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
1VAI
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BU of 1vai by Molmil
Structure of e. coli cyclophilin B K163T mutant bound to n-acetyl-ala-ala-pro-ala-7-amino-4-methylcoumarin
Descriptor: (ACE)AAPA(MCM), cyclophilin B
Authors:Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H.
Deposit date:2004-02-17
Release date:2004-09-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
3DXW
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BU of 3dxw by Molmil
The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam
Descriptor: Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE, azepan-2-one
Authors:Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T.
Deposit date:2008-07-25
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
3DXV
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BU of 3dxv by Molmil
The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Descriptor: Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE
Authors:Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T.
Deposit date:2008-07-25
Release date:2009-02-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
3WE0
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BU of 3we0 by Molmil
L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase/monooxygenase
Authors:Im, D.H, Matsui, D, Fukuta, Y, Fushinobu, S, Isobe, K, Asano, Y.
Deposit date:2013-06-26
Release date:2014-02-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mutational and crystallographic analysis of l-amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813: Interconversion between oxidase and monooxygenase activities
FEBS Open Bio, 4, 2014
1D2T
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BU of 1d2t by Molmil
CRYSTAL STRUCTURE OF ACID PHOSPHATASE FROM ESCHERICHIA BLATTAE
Descriptor: ACID PHOSPHATASE, SULFATE ION
Authors:Ishikawa, K, Mihara, Y, Gondoh, K, Suzuki, E, Asano, Y.
Deposit date:1999-09-28
Release date:2000-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structures of a novel acid phosphatase from Escherichia blattae and its complex with the transition-state analog molybdate.
EMBO J., 19, 2000
6JHC
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BU of 6jhc by Molmil
Hydroxynitrile lyase from the millipede, Chamberlinius hualienensis (ligand free)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hydroxynitrile lyase
Authors:Motojima, F, Asano, Y.
Deposit date:2019-02-18
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:R-hydroxynitrile lyase from the cyanogenic millipede, Chamberlinius hualienensis-A new entry to the carrier protein family Lipocalines.
Febs J., 288, 2021
5Y1F
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BU of 5y1f by Molmil
Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form)
Descriptor: NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S.
Deposit date:2017-07-20
Release date:2017-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase.
Biochemistry, 56, 2017
5Y1G
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BU of 5y1g by Molmil
Monomeric L-threonine 3-dehydrogenase from metagenome database (AKB and NADH bound form)
Descriptor: 2-AMINO-3-KETOBUTYRIC ACID, NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S.
Deposit date:2017-07-20
Release date:2017-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase.
Biochemistry, 56, 2017
5Y1E
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BU of 5y1e by Molmil
monomeric L-threonine 3-dehydrogenase from metagenome database (L-Ser and NAD+ bound form)
Descriptor: NAD dependent epimerase/dehydratase family, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SERINE
Authors:Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S.
Deposit date:2017-07-20
Release date:2017-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase.
Biochemistry, 56, 2017
5Y1D
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BU of 5y1d by Molmil
Monomeric L-threonine 3-dehydrogenase from metagenome database (apo form)
Descriptor: NAD dependent epimerase/dehydratase family
Authors:Motoyama, T, Nakano, S, Yamamoto, Y, Tokiwa, H, Asano, Y, Ito, S.
Deposit date:2017-07-20
Release date:2017-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Product Release Mechanism Associated with Structural Changes in Monomeric l-Threonine 3-Dehydrogenase.
Biochemistry, 56, 2017
3WEU
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BU of 3weu by Molmil
Crystal structure of the L-Lys epsilon-oxidase from Marinomonas mediterranea
Descriptor: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, L-lysine 6-oxidase, ...
Authors:Okazaki, S, Nakano, S, Matsui, D, Akaji, S, Inagaki, K, Asano, Y.
Deposit date:2013-07-12
Release date:2013-09-04
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea
J.Biochem., 154, 2013
3WMX
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BU of 3wmx by Molmil
GalE-like L-Threonine dehydrogenase from Cupriavidus necator (holo form)
Descriptor: NAD dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, THREONINE
Authors:Nakano, S, Okazaki, S, Tokiwa, H, Asano, Y.
Deposit date:2013-11-29
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Binding of NAD+ and L-Threonine Induces Stepwise Structural and Flexibility Changes in Cupriavidus necator L-Threonine Dehydrogenase
J.Biol.Chem., 289, 2014
7F30
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BU of 7f30 by Molmil
Crystal structure of OxdB E85A in complex with Z-2- (3-bromophenyl) propanal oxime
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Phenylacetaldoxime dehydratase, Z-2-(3-bromophenyl) propanal oxime
Authors:Muraki, N, Matsui, D, Asano, Y, Aono, S.
Deposit date:2021-06-15
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization.
J.Inorg.Biochem., 230, 2022
7F2Y
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BU of 7f2y by Molmil
Crystal structure of OxdB E85A mutant (form I)
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Phenylacetaldoxime dehydratase
Authors:Muraki, N, Matsui, D, Asano, Y, Aono, S.
Deposit date:2021-06-15
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization.
J.Inorg.Biochem., 230, 2022
7F2Z
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BU of 7f2z by Molmil
Crystal structure of OxdB E85A mutant (form II)
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Phenylacetaldoxime dehydratase
Authors:Muraki, N, Matsui, D, Asano, Y, Aono, S.
Deposit date:2021-06-15
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structural analysis of aldoxime dehydratase from Bacillus sp. OxB-1: Importance of surface residues in optimization for crystallization.
J.Inorg.Biochem., 230, 2022
1KKO
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BU of 1kko by Molmil
CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE
Descriptor: 3-METHYLASPARTATE AMMONIA-LYASE, SULFATE ION
Authors:Levy, C.W, Buckley, P.A, Sedelnikova, S, Kato, Y, Asano, Y, Rice, D.W, Baker, P.J.
Deposit date:2001-12-10
Release date:2002-01-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Insights into enzyme evolution revealed by the structure of methylaspartate ammonia lyase.
Structure, 10, 2002
1IW8
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BU of 1iw8 by Molmil
Crystal Structure of a mutant of acid phosphatase from Escherichia blattae (G74D/I153T)
Descriptor: SULFATE ION, acid phosphatase
Authors:Ishikawa, K, Mihara, Y, Shimba, N, Ohtsu, N, Kawasaki, H, Suzuki, E, Asano, Y.
Deposit date:2002-04-22
Release date:2002-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Enhancement of nucleoside phosphorylation activity in an acid phosphatase
PROTEIN ENG., 15, 2002
1KKR
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BU of 1kkr by Molmil
CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE CONTAINING (2S,3S)-3-METHYLASPARTIC ACID
Descriptor: (2S,3S)-3-methyl-aspartic acid, 3-METHYLASPARTATE AMMONIA-LYASE, MAGNESIUM ION
Authors:Levy, C.W, Buckley, P.A, Sedelnikova, S, Kato, K, Asano, Y, Rice, D.W, Baker, P.J.
Deposit date:2001-12-10
Release date:2002-01-30
Last modified:2014-11-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Insights into enzyme evolution revealed by the structure of methylaspartate ammonia lyase.
Structure, 10, 2002
3WWP
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BU of 3wwp by Molmil
S-selective hydroxynitrile lyase from Baliospermum montanum (apo2)
Descriptor: (S)-hydroxynitrile lyase, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Nakano, S, Dadashipour, M, Asano, Y.
Deposit date:2014-06-23
Release date:2014-10-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics
Biochim.Biophys.Acta, 1844, 2014
5Z76
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BU of 5z76 by Molmil
Artificial L-threonine 3-dehydrogenase designed by full consensus design
Descriptor: Artificial L-threonine 3-dehydrogenase
Authors:Nakano, S, Motoyama, T, Miyashita, Y, Ishizuka, Y, Matsuo, N, Tokiwa, H, Shinoda, S, Asano, Y, Ito, S.
Deposit date:2018-01-27
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Benchmark Analysis of Native and Artificial NAD+-Dependent Enzymes Generated by a Sequence-Based Design Method with or without Phylogenetic Data.
Biochemistry, 57, 2018
3X3H
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BU of 3x3h by Molmil
Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) 3KP (K176P, K199P, K224P) triple mutant
Descriptor: (S)-hydroxynitrile lyase
Authors:Cielo, C.B.C, Yamane, T, Asano, Y, Dadashipour, M, Suzuki, A, Mizushima, T, Komeda, H, Okazaki, S.
Deposit date:2015-01-21
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Crystallographic Studies of Manihot esculenta hydroxynitrile lyase Lysine-to-Proline mutants
TO BE PUBLISHED
5Z75
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BU of 5z75 by Molmil
Artificial L-threonine 3-dehydrogenase designed by ancestral sequence reconstruction.
Descriptor: Artificial L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, NONAETHYLENE GLYCOL, ...
Authors:Nakano, S, Motoyama, T, Miyashita, Y, Ishizuka, Y, Matsuo, N, Tokiwa, H, Shinoda, S, Asano, Y, Ito, S.
Deposit date:2018-01-27
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Benchmark Analysis of Native and Artificial NAD+-Dependent Enzymes Generated by a Sequence-Based Design Method with or without Phylogenetic Data.
Biochemistry, 57, 2018

 

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數據於2024-06-19公開中

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