2DMJ
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2D96
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2D8K
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2DM4
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![BU of 2dm4 by Molmil](/molmil-images/mine/2dm4) | Solution structure of the second fn3 domain of human sorLA/LR11 | Descriptor: | Sortilin-related receptor | Authors: | Nagashima, T, Kurosaki, C, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-04-20 | Release date: | 2006-10-20 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the second fn3 domain of human sorLA/LR11 To be Published
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2E2W
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2E32
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![BU of 2e32 by Molmil](/molmil-images/mine/2e32) | Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase | Descriptor: | F-box only protein 2, S-phase kinase-associated protein 1A | Authors: | Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K. | Deposit date: | 2006-11-20 | Release date: | 2007-03-20 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.52 Å) | Cite: | Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase Proc.Natl.Acad.Sci.Usa, 104, 2007
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2EBU
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2E33
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![BU of 2e33 by Molmil](/molmil-images/mine/2e33) | Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase | Descriptor: | F-box only protein 2, Ribonuclease pancreatic, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K. | Deposit date: | 2006-11-20 | Release date: | 2007-03-20 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase Proc.Natl.Acad.Sci.Usa, 104, 2007
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2ENZ
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2EOD
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2E31
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![BU of 2e31 by Molmil](/molmil-images/mine/2e31) | Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase | Descriptor: | F-box only protein 2, S-phase kinase-associated protein 1A | Authors: | Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K. | Deposit date: | 2006-11-20 | Release date: | 2007-03-20 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase Proc.Natl.Acad.Sci.Usa, 104, 2007
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2DC0
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![BU of 2dc0 by Molmil](/molmil-images/mine/2dc0) | Crystal structure of amidase | Descriptor: | probable amidase | Authors: | Ohshima, T, Sakuraba, H, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Satoh, S, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-12-17 | Release date: | 2007-01-02 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of amidase To be Published
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6LHR
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6LII
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![BU of 6lii by Molmil](/molmil-images/mine/6lii) | A quinone oxidoreductase | Descriptor: | Synaptic vesicle membrane protein VAT-1 homolog | Authors: | Hakoshima, T, Kim, S.-Y, Mori, T. | Deposit date: | 2019-12-11 | Release date: | 2021-01-20 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural insights into vesicle amine transport-1 (VAT-1) as a member of the NADPH-dependent quinone oxidoreductase family. Sci Rep, 11, 2021
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8IC8
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![BU of 8ic8 by Molmil](/molmil-images/mine/8ic8) | Exo-alpha-D-arabinofuranosidase from Microbacterium arabinogalactanolyticum | Descriptor: | Exo-alpha-D-arabinofuranosidase, PHOSPHATE ION | Authors: | Kashima, T, Arakawa, T, Yamada, C, Ishiwata, A, Fujita, K, Fushinobu, S. | Deposit date: | 2023-02-11 | Release date: | 2023-08-16 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.42 Å) | Cite: | Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nat Commun, 14, 2023
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8HPK
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![BU of 8hpk by Molmil](/molmil-images/mine/8hpk) | Crystal structure of the bacterial oxalate transporter OxlT in an oxalate-bound occluded form | Descriptor: | Fab fragment Heavy chein, Fab fragment Light chain, OXALATE ION, ... | Authors: | Shimamura, T, Hirai, T, Yamashita, A. | Deposit date: | 2022-12-12 | Release date: | 2023-02-15 | Last modified: | 2023-04-12 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Nat Commun, 14, 2023
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8HPJ
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4QBJ
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![BU of 4qbj by Molmil](/molmil-images/mine/4qbj) | Crystal structure of N-myristoyl transferase from Aspergillus fumigatus complexed with a synthetic inhibitor | Descriptor: | 3-[[3-methyl-2-[[2,3,4-tris(fluoranyl)phenoxy]methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine, Glycylpeptide N-tetradecanoyltransferase, S-(2-OXO)PENTADECYLCOA, ... | Authors: | Suzuki, M, Shimada, T. | Deposit date: | 2014-05-08 | Release date: | 2015-04-01 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of N-myristoyltransferase from Aspergillus fumigatus Acta Crystallogr.,Sect.D, 71, 2015
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7WDU
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![BU of 7wdu by Molmil](/molmil-images/mine/7wdu) | 6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with PUGNAc-6S | Descriptor: | Beta-N-acetylhexosaminidase, CALCIUM ION, [[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate | Authors: | Kashima, T, Yamada, C, Fushinobu, S, Katoh, T, Katayama, T. | Deposit date: | 2021-12-22 | Release date: | 2022-12-28 | Last modified: | 2023-06-14 | Method: | X-RAY DIFFRACTION (2.23 Å) | Cite: | A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. Nat.Chem.Biol., 19, 2023
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2RQJ
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![BU of 2rqj by Molmil](/molmil-images/mine/2rqj) | Quadruplex structure of an RNA aptamer against bovine prion protein | Descriptor: | RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3') | Authors: | Katahira, M, Mashima, T, Matsugami, A, Nishikawa, F, Nishikawa, S. | Deposit date: | 2009-07-18 | Release date: | 2009-11-17 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein Nucleic Acids Res., 37, 2009
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5T1F
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![BU of 5t1f by Molmil](/molmil-images/mine/5t1f) | Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase mutant Asn56Ala | Descriptor: | ACETIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Uncharacterized protein | Authors: | Yoshida, H, Shimasaki, T, Kamitori, S, Sode, K. | Deposit date: | 2016-08-19 | Release date: | 2017-06-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction Sci Rep, 7, 2017
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5T1E
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![BU of 5t1e by Molmil](/molmil-images/mine/5t1e) | Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase | Descriptor: | ACETIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Uncharacterized protein | Authors: | Yoshida, H, Shimasaki, T, Kamitori, S, Sode, K. | Deposit date: | 2016-08-19 | Release date: | 2017-06-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction Sci Rep, 7, 2017
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5YQ5
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![BU of 5yq5 by Molmil](/molmil-images/mine/5yq5) | Crystal structure of human osteomodulin | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Osteomodulin, PHOSPHATE ION | Authors: | Caaveiro, J.M.M, Tashima, T, Tsumoto, K. | Deposit date: | 2017-11-05 | Release date: | 2018-04-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.17 Å) | Cite: | Molecular basis for governing the morphology of type-I collagen fibrils by Osteomodulin. Commun Biol, 1, 2018
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2ZIY
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![BU of 2ziy by Molmil](/molmil-images/mine/2ziy) | Crystal structure of squid rhodopsin | Descriptor: | PALMITIC ACID, RETINAL, Rhodopsin | Authors: | Miyano, M, Shimamura, T. | Deposit date: | 2008-02-27 | Release date: | 2008-05-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (3.7 Å) | Cite: | Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region J.Biol.Chem., 283, 2008
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2Z41
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![BU of 2z41 by Molmil](/molmil-images/mine/2z41) | Crystal Structure Analysis of the Ski2-type RNA helicase | Descriptor: | MAGNESIUM ION, putative ski2-type helicase | Authors: | Nakashima, T, Zhang, X, Kakuta, Y, Yao, M, Tanaka, I, Kimura, M. | Deposit date: | 2007-06-12 | Release date: | 2008-04-08 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.51 Å) | Cite: | Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3 Protein Sci., 17, 2008
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