7W4A
| Cryo-EM structure of the gastric proton pump complexed with revaprazan | Descriptor: | 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, ... | Authors: | Abe, K, Tanaka, S, Morita, M, Yamagishi, T. | Deposit date: | 2021-11-26 | Release date: | 2022-03-02 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (2.76 Å) | Cite: | Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump. J.Med.Chem., 65, 2022
|
|
7BSP
| Cryo-EM structure of a human ATP11C-CDC50A flippase in E1-AMPPCP state | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, ... | Authors: | Abe, K, Nishizawa, T, Nakanishi, H. | Deposit date: | 2020-03-31 | Release date: | 2020-09-30 | Last modified: | 2020-10-14 | Method: | ELECTRON MICROSCOPY (4 Å) | Cite: | Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep, 32, 2020
|
|
7BSV
| Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdSer-occluded E2-AlF state | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, CDC50A, ... | Authors: | Abe, K, Nishizawa, T, Nakanishi, H. | Deposit date: | 2020-03-31 | Release date: | 2020-09-30 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep, 32, 2020
|
|
7BSW
| Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdEtn-occluded E2-AlF state | Descriptor: | 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, ... | Authors: | Abe, K, Nishizawa, T, Nakanishi, H. | Deposit date: | 2020-03-31 | Release date: | 2020-09-30 | Last modified: | 2020-10-14 | Method: | ELECTRON MICROSCOPY (3.9 Å) | Cite: | Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep, 32, 2020
|
|
7X24
| Cryo-EM structure of non gastric H,K-ATPase alpha2 SPWC mutant in (2K+)E2-AlF state | Descriptor: | 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ... | Authors: | Abe, K, Nakanishi, H, Young, V, Artigas, P. | Deposit date: | 2022-02-25 | Release date: | 2022-10-05 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structure and function of H + /K + pump mutants reveal Na + /K + pump mechanisms. Nat Commun, 13, 2022
|
|
7X23
| Cryo-EM structure of non gastric H,K-ATPase alpha2 SPWC mutant in 3Na+E1-AMPPCPF state | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Potassium-transporting ATPase alpha chain 2, ... | Authors: | Abe, K, Nakanishi, H, Young, V, Artigas, P. | Deposit date: | 2022-02-25 | Release date: | 2022-10-05 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Structure and function of H + /K + pump mutants reveal Na + /K + pump mechanisms. Nat Commun, 13, 2022
|
|
7BSS
| Cryo-EM structure of a human ATP11C-CDC50A flippase in E1AlF state | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, CDC50A, ... | Authors: | Abe, K, Nishizawa, T, Nakanishi, H. | Deposit date: | 2020-03-31 | Release date: | 2020-09-30 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep, 32, 2020
|
|
7BSU
| Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdSer-bound E2BeF state | Descriptor: | 1-deoxy-alpha-D-mannopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, ... | Authors: | Abe, K, Nishizawa, T, Nakanishi, H. | Deposit date: | 2020-03-31 | Release date: | 2020-09-30 | Last modified: | 2020-10-14 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep, 32, 2020
|
|
7BSQ
| Cryo-EM structure of a human ATP11C-CDC50A flippase in E1AlF-ADP state | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-DIPHOSPHATE, ATP11C, ... | Authors: | Abe, K, Nishizawa, T, Nakanishi, H. | Deposit date: | 2020-03-31 | Release date: | 2020-09-30 | Last modified: | 2020-10-14 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM. Cell Rep, 32, 2020
|
|
5YD4
| |
5YD5
| |
5YD3
| Crystal structure of the scFv antibody 4B08 with epitope peptide | Descriptor: | Epitope peptide, GLYCEROL, SULFATE ION, ... | Authors: | Caaveiro, J.M.M, Miyanabe, K, Tsumoto, K. | Deposit date: | 2017-09-11 | Release date: | 2018-06-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody J. Biochem., 164, 2018
|
|
2I5Z
| The crystal structure of OspA mutant | Descriptor: | Outer surface protein A, TETRAETHYLENE GLYCOL | Authors: | Makabe, K, Terechko, V, Koide, S. | Deposit date: | 2006-08-26 | Release date: | 2007-07-10 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet. J.Mol.Biol., 368, 2007
|
|
6J48
| Glycine mutation on single layer beta-sheet of OspAsm1 | Descriptor: | Outer surface protein A, TETRAETHYLENE GLYCOL | Authors: | Makabe, K, Hori, Y. | Deposit date: | 2019-01-08 | Release date: | 2019-03-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.201 Å) | Cite: | Grafting a short chameleon sequence from alpha B crystallin into a beta-sheet scaffold protein. Proteins, 87, 2019
|
|
6J47
| |
6J49
| Grafting VLADV sequence into OspAsm1 | Descriptor: | Outer surface protein A, TETRAETHYLENE GLYCOL | Authors: | Makabe, K, Hori, Y. | Deposit date: | 2019-01-08 | Release date: | 2019-03-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Grafting a short chameleon sequence from alpha B crystallin into a beta-sheet scaffold protein. Proteins, 87, 2019
|
|
6LA0
| Crystal structure of AoRut | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoside hydrolase family 5 | Authors: | Koseki, T, Makabe, K. | Deposit date: | 2019-11-11 | Release date: | 2020-11-11 | Last modified: | 2024-10-16 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Aspergillus oryzae Rutinosidase: Biochemical and Structural Investigation. Appl.Environ.Microbiol., 87, 2021
|
|
2OY5
| The crystal structure of OspA mutant | Descriptor: | Outer surface protein A | Authors: | Makabe, K, Terechko, V, Biancalana, M, Yan, S, Koide, S. | Deposit date: | 2007-02-21 | Release date: | 2008-03-04 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Aromatic cluster mutations produce focal modulations of beta-sheet structure. Protein Sci., 24, 2015
|
|
2OY8
| |
2OY7
| |
2OYB
| |
3EEX
| The crystal structure of OspA mutant | Descriptor: | HEXAETHYLENE GLYCOL, Outer Surface Protein A | Authors: | Makabe, K, Biancalana, M, Koide, S. | Deposit date: | 2008-09-06 | Release date: | 2009-09-08 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (2.49 Å) | Cite: | Minimalist design of water-soluble cross-{beta} architecture. Proc.Natl.Acad.Sci.USA, 107, 2010
|
|
3VYV
| Crystal structure of subtilisin NAT at 1.36 | Descriptor: | CALCIUM ION, GLYCEROL, Subtilisin NAT | Authors: | Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K. | Deposit date: | 2012-10-03 | Release date: | 2013-10-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.36 Å) | Cite: | Crystal structure of subtilisin NAT at 1.36 TO BE PUBLISHED
|
|
7X2B
| Red fluorescent protein from Diadumene lineata | Descriptor: | Red fluorescent protein, SULFATE ION | Authors: | Makabe, K, Hotta, J, Mizuno, H. | Deposit date: | 2022-02-25 | Release date: | 2023-03-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.63 Å) | Cite: | Cloning and structural basis of fluorescent protein color variants from identical species of sea anemone, Diadumene lineata. Photochem Photobiol Sci, 22, 2023
|
|
3AUM
| Crystal structure of OspA mutant | Descriptor: | Outer surface protein A | Authors: | Makabe, K. | Deposit date: | 2011-02-10 | Release date: | 2012-02-15 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Aromatic cluster mutations produce focal modulations of beta-sheet structure. Protein Sci., 24, 2015
|
|