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4FF1
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BU of 4ff1 by Molmil
N4 mini-vRNAP transcription initiation complex, 1 min after soaking GTP, ATP and Mn
Descriptor: Bacteriophag N4 P2 promoter, PHOSPHATE ION, Virion RNA polymerase
Authors:Murakami, K.S, Basu, R.S.
Deposit date:2012-05-30
Release date:2012-12-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
4JK2
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BU of 4jk2 by Molmil
X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with guanosine pentaphosphate (pppGpp)
Descriptor: Escherichia coli RNA polymerase alpha subunit, Escherichia coli RNA polymerase beta subunit, Escherichia coli RNA polymerase beta' subunit, ...
Authors:Murakami, K.S.
Deposit date:2013-03-09
Release date:2013-04-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (4.201 Å)
Cite:Differential regulation by ppGpp versus pppGpp in Escherichia coli.
Nucleic Acids Res., 41, 2013
4JK1
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BU of 4jk1 by Molmil
X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with Guanosine tetraphosphate (ppGpp)
Descriptor: Escherichia coli RNA polymerase alpha subunit, Escherichia coli RNA polymerase beta subunit, Escherichia coli RNA polymerase beta' subunit, ...
Authors:Murakami, K.S.
Deposit date:2013-03-09
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Differential regulation by ppGpp versus pppGpp in Escherichia coli.
Nucleic Acids Res., 41, 2013
4KN4
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BU of 4kn4 by Molmil
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin-2b
Descriptor: Benzoxazinorifamycin-2b, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Murakami, K.S.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.965 Å)
Cite:X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins.
J.Med.Chem., 56, 2013
4KN7
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BU of 4kn7 by Molmil
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin-2c
Descriptor: Benzoxazinorifamycin-2c, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Murakami, K.S.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.686 Å)
Cite:X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins.
J.Med.Chem., 56, 2013
4KMU
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BU of 4kmu by Molmil
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Rifampin
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.85 Å)
Cite:X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins.
J.Med.Chem., 56, 2013
5VSW
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BU of 5vsw by Molmil
X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S, Molodtsov, V.
Deposit date:2017-05-12
Release date:2017-06-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (4.295 Å)
Cite:Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA.
Mol. Cell, 69, 2018
5W1S
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BU of 5w1s by Molmil
X-ray crystal structure of Escherichia coli RNA polymerase and TraR complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S, Molodtsov, V.
Deposit date:2017-06-04
Release date:2017-06-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.805 Å)
Cite:Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA.
Mol. Cell, 69, 2018
5W1T
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BU of 5w1t by Molmil
X-ray crystal structure of Escherichia coli RNA polymerase and DksA complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Murakami, K.S, Molodtsov, V.
Deposit date:2017-06-04
Release date:2017-06-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA.
Mol. Cell, 69, 2018
3BNK
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BU of 3bnk by Molmil
X-ray crystal structure of Flavoredoxin from Methanosarcina acetivorans
Descriptor: FLAVIN MONONUCLEOTIDE, Flavoredoxin
Authors:Suharti, S, Murakami, K.S, Ferry, J.G.
Deposit date:2007-12-14
Release date:2008-10-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and biochemical characterization of flavoredoxin from the archaeon Methanosarcina acetivorans
Biochemistry, 47, 2008
3C46
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BU of 3c46 by Molmil
X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2
Descriptor: DIHYDROGENPHOSPHATE ION, P2_7a Promoter DNA, Virion RNA polymerase
Authors:Gleghorn, M.L, Murakami, K.S.
Deposit date:2008-01-29
Release date:2008-12-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase.
Mol.Cell, 32, 2008
8SYI
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BU of 8syi by Molmil
Cyanobacterial RNAP-EC
Descriptor: DNA (37-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Qayyum, M.Z, Imashimizu, M, Leanca, M, Vishwakarma, R.K, Bradley Riaz, A, Yuzenkova, Y, Murakami, K.S.
Deposit date:2023-05-25
Release date:2023-07-05
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
7MKO
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BU of 7mko by Molmil
Escherichia coli RNA polymerase elongation complex
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Qayyum, M.Z, Murakami, K.S.
Deposit date:2021-04-26
Release date:2021-06-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli.
J.Biol.Chem., 297, 2021
7MKN
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BU of 7mkn by Molmil
Escherichia coli RNA polymerase and RapA elongation complex
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Qayyum, M.Z, Murakami, K.S.
Deposit date:2021-04-26
Release date:2021-06-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli.
J.Biol.Chem., 297, 2021
7MKQ
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BU of 7mkq by Molmil
Escherichia coli RNA polymerase and RapA binary complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Qayyum, M.Z, Murakami, K.S.
Deposit date:2021-04-26
Release date:2021-06-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli.
J.Biol.Chem., 297, 2021
7MKP
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BU of 7mkp by Molmil
Escherichia coli RNA polymerase core enzyme
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Qayyum, M.Z, Murakami, K.S.
Deposit date:2021-04-26
Release date:2021-06-23
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli.
J.Biol.Chem., 297, 2021
5NWT
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BU of 5nwt by Molmil
Crystal Structure of Escherichia coli RNA polymerase - Sigma54 Holoenzyme complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Zhang, X, Buck, M, Darbari, V.C, Yang, Y, Zhang, N, Lu, D, Glyde, R, Wang, Y, Winkelman, J, Gourse, R.L, Murakami, K.S.
Deposit date:2017-05-08
Release date:2017-09-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.76 Å)
Cite:TRANSCRIPTION. Structures of the RNA polymerase-Sigma54 reveal new and conserved regulatory strategies.
Science, 349, 2015
3C2P
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BU of 3c2p by Molmil
X-ray crystal structure of the N4 mini-vRNAP P1 promoter complex
Descriptor: P1 Promoter DNA, Virion RNA polymerase
Authors:Gleghorn, M.L, Murakami, K.S.
Deposit date:2008-01-25
Release date:2008-12-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase.
Mol.Cell, 32, 2008
3C3L
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BU of 3c3l by Molmil
X-ray crystal structure of the N4 mini-vRNAP P2 promoter complex
Descriptor: P2 Promoter DNA, Virion RNA polymerase
Authors:Gleghorn, M.L, Murakami, K.S.
Deposit date:2008-01-28
Release date:2008-12-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase.
Mol.Cell, 32, 2008
8URW
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BU of 8urw by Molmil
Cyanobacterial RNA polymerase elongation complex with NusG and CTP
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, DNA (40-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Qayyum, M.Z, Imashimizu, M, Leanca, M, Vishwakarma, R.K, Bradley Riaz, A, Yuzenkova, Y, Murakami, K.S.
Deposit date:2023-10-26
Release date:2023-12-27
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
8EOE
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BU of 8eoe by Molmil
Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_LG)
Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarm, R.K, Murakami, K.S.
Deposit date:2022-10-03
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EOS
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BU of 8eos by Molmil
M. tuberculosis RNAP elongation complex with NusG and CMPCPP
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (36-MER), DNA (38-MER), ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-04
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EXY
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BU of 8exy by Molmil
M. tuberculosis RNAP paused complex with B. subtilis NusG and GMPCPP
Descriptor: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-10-26
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EOF
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BU of 8eof by Molmil
Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_PG)
Descriptor: DNA (35-MER), DNA (38-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Vishwakarm, R.K, Murakami, K.S.
Deposit date:2022-10-03
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EHQ
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BU of 8ehq by Molmil
Mycobacterium tuberculosis paused transcription complex with Bacillus subtilis NusG
Descriptor: DNA (38-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Vishwakarma, R.K, Murakami, K.S.
Deposit date:2022-09-14
Release date:2023-02-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.
Proc.Natl.Acad.Sci.USA, 120, 2023

226707

數據於2024-10-30公開中

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