Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7WEB
DownloadVisualize
BU of 7web by Molmil
SARS-CoV-2 Omicron variant spike protein with two XGv347 binding to two open state RBDs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Wang, X, Wang, L.
Deposit date:2021-12-23
Release date:2022-05-04
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WLC
DownloadVisualize
BU of 7wlc by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv282
Descriptor: Heavy chain of XGv282, Light chain of XGv282, Spike protein S1
Authors:Wang, X, Wang, L.
Deposit date:2022-01-13
Release date:2022-04-13
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WED
DownloadVisualize
BU of 7wed by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv347
Descriptor: Spike protein S1, The heavy chain of Fab XGv347, The light chain of Fab XGv347
Authors:Wang, X, Wang, L.
Deposit date:2021-12-23
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
1UCW
DownloadVisualize
BU of 1ucw by Molmil
COMPLEX OF TRANSALDOLASE WITH THE REDUCED SCHIFF-BASE INTERMEDIATE
Descriptor: TRANSALDOLASE
Authors:Jia, J, Lindqvist, Y, Schneider, G.
Deposit date:1996-11-14
Release date:1997-07-07
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the reduced Schiff-base intermediate complex of transaldolase B from Escherichia coli: mechanistic implications for class I aldolases.
Protein Sci., 6, 1997
1I2R
DownloadVisualize
BU of 1i2r by Molmil
CRYSTAL STRUCTURE OF ESCHERICHIA COLI TRANSALDOLASE B MUTANT S176A
Descriptor: TRANSALDOLASE B
Authors:Thorell, S, Jia, J, Schneider, G.
Deposit date:2001-02-12
Release date:2001-05-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification of catalytically important residues in the active site of Escherichia coli transaldolase.
Eur.J.Biochem., 268, 2001
1I2P
DownloadVisualize
BU of 1i2p by Molmil
CRYSTAL STRUCTURE OF ESCHERICHIA COLI TRANSALDOLASE B MUTANT D17A
Descriptor: TRANSALDOLASE B
Authors:Thorell, S, Jia, J, Schneider, G.
Deposit date:2001-02-12
Release date:2001-05-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Identification of catalytically important residues in the active site of Escherichia coli transaldolase.
Eur.J.Biochem., 268, 2001
1I2O
DownloadVisualize
BU of 1i2o by Molmil
CRYSTAL STRUCTURE OF ESCHERICHIA COLI TRANSALDOLASE B MUTANT E96A
Descriptor: TRANSALDOLASE B
Authors:Thorell, S, Jia, J, Schneider, G.
Deposit date:2001-02-12
Release date:2001-05-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Identification of catalytically important residues in the active site of Escherichia coli transaldolase.
Eur.J.Biochem., 268, 2001
1I2N
DownloadVisualize
BU of 1i2n by Molmil
CRYSTAL STRUCTURE OF ESCHERICHIA COLI TRANSALDOLASE B MUTANT N35A
Descriptor: TRANSALDOLASE B
Authors:Thorell, S, Jia, J, Schneider, G.
Deposit date:2001-02-12
Release date:2001-05-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Identification of catalytically important residues in the active site of Escherichia coli transaldolase.
Eur.J.Biochem., 268, 2001
1I2Q
DownloadVisualize
BU of 1i2q by Molmil
CRYSTAL STRUCTURE OF ESCHERICHIA COLI TRANSALDOLASE B MUTANT T156A
Descriptor: TRANSALDOLASE B
Authors:Thorell, S, Jia, J, Schneider, G.
Deposit date:2001-02-12
Release date:2001-05-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Identification of catalytically important residues in the active site of Escherichia coli transaldolase.
Eur.J.Biochem., 268, 2001
1A0Q
DownloadVisualize
BU of 1a0q by Molmil
29G11 COMPLEXED WITH PHENYL [1-(1-N-SUCCINYLAMINO)PENTYL] PHOSPHONATE
Descriptor: 29G11 FAB (HEAVY CHAIN), 29G11 FAB (LIGHT CHAIN), PHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE, ...
Authors:Buchbinder, J.L, Stephenson, R.C, Scanlan, T.S, Fletterick, R.J.
Deposit date:1997-12-05
Release date:1999-03-02
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A comparison of the crystallographic structures of two catalytic antibodies with esterase activity.
J.Mol.Biol., 282, 1998
1DAM
DownloadVisualize
BU of 1dam by Molmil
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH DETHIOBIOTIN, ADP, INORGANIC PHOSPHATE AND MAGNESIUM
Descriptor: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kaeck, H, Sandmark, J, Gibson, K.J, Schneider, G, Lindqvist, Y.
Deposit date:1998-08-31
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of two quaternary complexes of dethiobiotin synthetase, enzyme-MgADP-AlF3-diaminopelargonic acid and enzyme-MgADP-dethiobiotin-phosphate; implications for catalysis.
Protein Sci., 7, 1998
1DBS
DownloadVisualize
BU of 1dbs by Molmil
MECHANISTIC IMPLICATIONS AND FAMILY RELATIONSHIPS FROM THE STRUCTURE OF DETHIOBIOTIN SYNTHETASE
Descriptor: DETHIOBIOTIN SYNTHETASE, SULFATE ION
Authors:Sawyer, L, Alexeev, D.
Deposit date:1994-11-29
Release date:1995-04-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanistic implications and family relationships from the structure of dethiobiotin synthetase.
Structure, 2, 1994
1BYI
DownloadVisualize
BU of 1byi by Molmil
STRUCTURE OF APO-DETHIOBIOTIN SYNTHASE AT 0.97 ANGSTROMS RESOLUTION
Descriptor: DETHIOBIOTIN SYNTHASE
Authors:Sandalova, T, Schneider, G, Kaeck, H, Lindqvist, Y.
Deposit date:1998-10-15
Release date:1999-06-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Structure of dethiobiotin synthetase at 0.97 A resolution.
Acta Crystallogr.,Sect.D, 55, 1999
1BS1
DownloadVisualize
BU of 1bs1 by Molmil
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH DETHIOBIOTIN, ADP , INORGANIC PHOSPHATE AND MAGNESIUM
Descriptor: 8-AMINO-7-CARBOXYAMINO-NONANOIC ACID WITH ALUMINUM FLUORIDE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kaeck, H, Sandmark, J, Gibson, K.J, Schneider, G, Lindqvist, Y.
Deposit date:1998-08-31
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of two quaternary complexes of dethiobiotin synthetase, enzyme-MgADP-AlF3-diaminopelargonic acid and enzyme-MgADP-dethiobiotin-phosphate; implications for catalysis.
Protein Sci., 7, 1998
1F40
DownloadVisualize
BU of 1f40 by Molmil
SOLUTION STRUCTURE OF FKBP12 COMPLEXED WITH GPI-1046, A NEUROTROPHIC LIGAND
Descriptor: (2S)-[3-PYRIDYL-1-PROPYL]-1-[3,3-DIMETHYL-1,2-DIOXOPENTYL]-2-PYRROLIDINECARBOXYLATE, FK506 BINDING PROTEIN (FKBP12)
Authors:Sich, C, Improta, S, Cowley, D.J, Guenet, C, Merly, J.P, Teufel, M, Saudek, V.
Deposit date:2000-06-07
Release date:2000-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a neurotrophic ligand bound to FKBP12 and its effects on protein dynamics.
Eur.J.Biochem., 267, 2000
5EQR
DownloadVisualize
BU of 5eqr by Molmil
Crystal structure of a genotype 1a/3a chimeric HCV NS3/4A protease in complex with danoprevir
Descriptor: (2R,6S,12Z,13aS,14aR,16aS)-6-[(tert-butoxycarbonyl)amino]-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxo-1,2,3,5,6,7,8 ,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-2-yl 4-fluoro-2H-isoindole-2-carboxylate, NS3 protease, SULFATE ION, ...
Authors:Soumana, D, Yilmaz, N.K, Ali, A, Prachanronarong, K.L, Schiffer, C.A.
Deposit date:2015-11-13
Release date:2016-11-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Molecular and Dynamic Mechanism Underlying Drug Resistance in Genotype 3 Hepatitis C NS3/4A Protease.
J.Am.Chem.Soc., 138, 2016
5ESB
DownloadVisualize
BU of 5esb by Molmil
Crystal structure of a genotype 1a/3a chimeric HCV NS3/4A protease in complex with Vaniprevir
Descriptor: (5R,7S,10S)-10-tert-butyl-N-{(1R,2R)-1-[(cyclopropylsulfonyl)carbamoyl]-2-ethylcyclopropyl}-15,15-dimethyl-3,9,12-trioxo-6,7,9,10,11,12,14,15,16,17,18,19-dodecahydro-1H,5H-2,23:5,8-dimethano-4,13,2,8,11-benzodioxatriazacyclohenicosine-7(3H)-carboxamide, NS3 protease, SULFATE ION, ...
Authors:Soumana, D, Yilmaz, N.K, Ali, A, Prachanronarong, K.L, Schiffer, C.A.
Deposit date:2015-11-16
Release date:2016-11-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular and Dynamic Mechanism Underlying Drug Resistance in Genotype 3 Hepatitis C NS3/4A Protease.
J.Am.Chem.Soc., 138, 2016
5EQQ
DownloadVisualize
BU of 5eqq by Molmil
Crystal structure of HCV NS3/4A WT protease in complex with 5172-Linear (MK-5172 linear analogue)
Descriptor: NS3 protease, SULFATE ION, ZINC ION, ...
Authors:Soumana, D, Yilmaz, N.K, Ali, A, Prachanronarong, K.L, Aydin, C, Schiffer, C.A.
Deposit date:2015-11-13
Release date:2016-01-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and Thermodynamic Effects of Macrocyclization in HCV NS3/4A Inhibitor MK-5172.
Acs Chem.Biol., 11, 2016
5EPY
DownloadVisualize
BU of 5epy by Molmil
Crystal structure of HCV NS3/4A protease A156T variant in complex with 5172-mcP1P3 (MK-5172 P1-P3 macrocyclic analogue)
Descriptor: 2-Methyl-2-propanyl {(2R,6S,12Z,13aS,14aR,16aS)-14a-[(cyclopropylsulfonyl)carbamoyl]-2-[(3-ethyl-7-methoxy-2-quinoxalinyl)oxy]-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclop ropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl}carbamate, NS3 protease, SULFATE ION, ...
Authors:Soumana, D.I, Yilmaz, N.K, Ali, A, Prachanronarong, K.L, Aydin, C, Schiffer, C.A.
Deposit date:2015-11-12
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Thermodynamic Effects of Macrocyclization in HCV NS3/4A Inhibitor MK-5172.
Acs Chem.Biol., 11, 2016
5EPN
DownloadVisualize
BU of 5epn by Molmil
Crystal structure of HCV NS3/4A protease in complex with 5172-mcP1P3 (MK-5172 P1-P3 macrocyclic analogue)
Descriptor: 2-Methyl-2-propanyl {(2R,6S,12Z,13aS,14aR,16aS)-14a-[(cyclopropylsulfonyl)carbamoyl]-2-[(3-ethyl-7-methoxy-2-quinoxalinyl)oxy]-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclop ropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl}carbamate, NS3 protease, SULFATE ION, ...
Authors:Soumana, D.I, Yilmaz, N.K, Ali, A, Prachanronarong, K.L, Aydin, C, Schiffer, C.A.
Deposit date:2015-11-11
Release date:2016-01-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Thermodynamic Effects of Macrocyclization in HCV NS3/4A Inhibitor MK-5172.
Acs Chem.Biol., 11, 2016
7DFE
DownloadVisualize
BU of 7dfe by Molmil
NMR structure of TuSp2-RP
Descriptor: B6 protein
Authors:Lin, Z, Fan, T, Fan, J.
Deposit date:2020-11-07
Release date:2021-11-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:1H, 15N and 13C resonance assignments of a repetitive domain of tubuliform spidroin 2
Biomol.Nmr Assign., 15, 2021
7CAI
DownloadVisualize
BU of 7cai by Molmil
SARS-CoV-2 S trimer with two RBDs in the open state and complexed with two H014 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H014 Fab, ...
Authors:Zhe, L, Cao, L, Deng, Y, Sun, Y, Wang, N, Xie, L, Wang, Y, Rao, Z, Qin, C, Wang, X.
Deposit date:2020-06-08
Release date:2020-09-23
Last modified:2020-09-30
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody.
Science, 369, 2020
7CAK
DownloadVisualize
BU of 7cak by Molmil
SARS-CoV-2 S trimer with three RBD in the open state and complexed with three H014 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H014 Fab, ...
Authors:Zhe, L, Cao, L, Deng, Y, Sun, Y, Wang, N, Xie, L, Wang, Y, Rao, Z, Qin, C, Wang, X.
Deposit date:2020-06-08
Release date:2020-09-23
Last modified:2020-09-30
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody.
Science, 369, 2020
7CAB
DownloadVisualize
BU of 7cab by Molmil
Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhe, L, Cao, L, Deng, Y, Sun, Y, Wang, N, Xie, L, Wang, Y, Rao, Z, Qin, C, Wang, X.
Deposit date:2020-06-08
Release date:2020-12-16
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody.
Science, 369, 2020
7CHO
DownloadVisualize
BU of 7cho by Molmil
Crystal structure of SARS-CoV-2 antibody P5A-1D2 with RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, antibody P5A-1D2 heavy chain, ...
Authors:Wang, X, Zhang, L, Ge, J, Wang, R, Zhang, Q.
Deposit date:2020-07-06
Release date:2021-05-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.561 Å)
Cite:Potent and protective IGHV3-53/3-66 public antibodies and their shared escape mutant on the spike of SARS-CoV-2.
Nat Commun, 12, 2021

221051

數據於2024-06-12公開中

PDB statisticsPDBj update infoContact PDBjnumon