1HO6
 
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1HOQ
 | | CHIMERIC RNA/DNA HAIRPIN | | Descriptor: | DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*GP*GP*TP*CP*C)-3') | | Authors: | Denisov, A.Y, Gehring, K. | | Deposit date: | 2000-12-11 | | Release date: | 2001-11-07 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.
Nucleic Acids Res., 29, 2001
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1ZY3
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1TQZ
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1ME1
 | | Chimeric hairpin with 2',5'-linked RNA loop and RNA stem | | Descriptor: | 5'-R(*GP*GP*AP*CP*(U25)P*(U25)P*(C25)P*(5GP)P*GP*UP*CP*C)-3' | | Authors: | Denisov, A.Y, Hannoush, R.N, Gehring, K, Damha, M.J. | | Deposit date: | 2002-08-07 | | Release date: | 2003-08-19 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | A Novel RNA Motif Based on the Structure of Unusually Stable 2',5'-Linked r(UUCG) Loops
J.AM.CHEM.SOC., 125, 2003
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1MK3
 | | SOLUTION STRUCTURE OF HUMAN BCL-W PROTEIN | | Descriptor: | Apoptosis regulator Bcl-W | | Authors: | Denisov, A.Y, Madiraju, M.S, Chen, G, Khadir, A, Beauparlant, P, Attardo, G, Shore, G.C, Gehring, K. | | Deposit date: | 2002-08-28 | | Release date: | 2003-06-03 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Solution structure of human BCL-w: modulation of ligand binding by the C-terminal helix
J.BIOL.CHEM., 278, 2003
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1ME0
 | | Chimeric hairpin with 2',5'-linked RNA loop and DNA stem | | Descriptor: | DNA/RNA (5'-D(*GP*GP*AP*C)-R(P*(U25)P*(U25)P*(C25)P*(5GP))-D(P*GP*TP*CP*C)-3') | | Authors: | Denisov, A.Y, Hannoush, R.N, Gehring, K, Damha, M.J. | | Deposit date: | 2002-08-07 | | Release date: | 2003-08-19 | | Last modified: | 2024-05-01 | | Method: | SOLUTION NMR | | Cite: | A Novel RNA Motif Based on the Structure of Unusually Stable 2',5'-Linked r(UUCG) Loops
J.AM.CHEM.SOC., 125, 2003
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2LZW
 | | DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link | | Descriptor: | DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), HEPTANE | | Authors: | Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. | | Deposit date: | 2012-10-11 | | Release date: | 2013-10-16 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase.
Org.Biomol.Chem., 15, 2017
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2LZV
 | | DNA duplex containing mispair-aligned O4U-heptylene-O4U interstrand cross-link | | Descriptor: | DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), HEPTANE | | Authors: | Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. | | Deposit date: | 2012-10-11 | | Release date: | 2013-10-16 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase.
Org.Biomol.Chem., 15, 2017
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2K18
 | | Solution structure of bb' domains of human protein disulfide isomerase | | Descriptor: | Protein disulfide-isomerase | | Authors: | Denisov, A.Y, Maattanen, P, Dabrowski, C, Kozlov, G, Thomas, D.Y, Gehring, K. | | Deposit date: | 2008-02-22 | | Release date: | 2008-04-29 | | Last modified: | 2024-05-29 | | Method: | SOLUTION NMR | | Cite: | Solution structure of the bb' domains of human protein disulfide isomerase.
Febs J., 276, 2009
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2MH6
 | | Solution structure of DNA duplex containing N3T-ethylene-N1I interstrand cross-link | | Descriptor: | 5'-D(*CP*AP*GP*TP*TP*CP*CP*A)-3', 5'-D(*TP*GP*GP*AP*IP*CP*TP*G)-3' | | Authors: | Denisov, A.Y, O'Flaherty, D.K, Noronha, A.M, Wilds, C.J. | | Deposit date: | 2013-11-18 | | Release date: | 2014-07-02 | | Last modified: | 2024-05-15 | | Method: | SOLUTION NMR | | Cite: | NMR Structure of an Ethylene Interstrand Cross-Linked DNA which Mimics the Lesion Formed by 1,3-Bis(2-chloroethyl)-1-nitrosourea.
Chemmedchem, 9, 2014
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2I3E
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2ILX
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2DAU
 | | DICKERSON-DREW DNA DODECAMER, NMR, MINIMIZED AVERAGE STRUCTURE | | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') | | Authors: | Denisov, A, Bekiroglu, S, Maltseva, T, Sandstrom, A, Altmann, K.-H, Egli, M, Chattopadhyaya, J. | | Deposit date: | 1998-01-20 | | Release date: | 1998-05-27 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart.
J.Biomol.Struct.Dyn., 16, 1998
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1ESS
 | | STEROID TETHERED DNA, NMR, MINIMIZED AVERAGE STRUCTURE | | Descriptor: | DNA (5'-D(P*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*CP*A)-3'), DNA (5'-D(P*TP*GP*GP*AP*GP*CP*TP*G)-3'), ... | | Authors: | Denisov, A, Sandstrom, A, Maltseva, T, Pyshnyi, D, Ivanova, E, Zarytova, V, Chattopadhyaya, J. | | Deposit date: | 1997-06-17 | | Release date: | 1997-09-17 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | The NMR structure of estrone (Es)-tethered tandem DNA duplex: [d(5'pCAGCp3')-Es] + [Es-d(5'pTCCA3')]: d(5'pTGGAGCTG3').
J.Biomol.Struct.Dyn., 15, 1997
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1DAU
 | | Analog of dickerson-drew DNA dodecamer with 6'-alpha-methyl carbocyclic thymidines, NMR, minimized average structure | | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*AP*AP*(T32)P*(T32)P*CP*GP*CP*G)-3') | | Authors: | Denisov, A, Bekiroglu, S, Maltseva, T, Sandstrom, A, Altmann, K.-H, Egli, M, Chattopadhyaya, J. | | Deposit date: | 1998-01-21 | | Release date: | 1998-05-27 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart.
J.Biomol.Struct.Dyn., 16, 1998
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1TAN
 | | TANDEM DNA, NMR, MINIMIZED AVERAGE STRUCTURE | | Descriptor: | DNA (5'-D(P*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*CP*A)-3'), DNA (5'-D(P*TP*GP*GP*AP*GP*CP*TP*G)-3') | | Authors: | Denisov, A, Sandstrom, A, Maltseva, T, Pyshnyi, D, Ivanova, E, Zarytova, V, Chattopadhyaya, J. | | Deposit date: | 1997-06-17 | | Release date: | 1997-09-17 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | The NMR structure of estrone (Es)-tethered tandem DNA duplex: [d(5'pCAGCp3')-Es] + [Es-d(5'pTCCA3')]: d(5'pTGGAGCTG3').
J.Biomol.Struct.Dyn., 15, 1997
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1JDQ
 | | Solution Structure of TM006 Protein from Thermotoga maritima | | Descriptor: | HYPOTHETICAL PROTEIN TM0983 | | Authors: | Denisov, A.Y, Finak, G, Yee, A, Kozlov, G, Gehring, K, Arrowsmith, C.H. | | Deposit date: | 2001-06-14 | | Release date: | 2002-02-27 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | An NMR approach to structural proteomics.
Proc.Natl.Acad.Sci.USA, 99, 2002
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5TGG
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3O10
 | | Crystal structure of the HEPN domain from human sacsin | | Descriptor: | MALONATE ION, Sacsin | | Authors: | Kozlov, G, Gehring, K. | | Deposit date: | 2010-07-20 | | Release date: | 2011-03-30 | | Last modified: | 2014-07-30 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural basis of defects in the sacsin HEPN domain responsible for autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS).
J.Biol.Chem., 286, 2011
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1FC8
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3IDV
 | | Crystal structure of the a0a fragment of ERp72 | | Descriptor: | CHLORIDE ION, Protein disulfide-isomerase A4, ZINC ION | | Authors: | Kozlov, G, Gehring, K. | | Deposit date: | 2009-07-21 | | Release date: | 2010-07-07 | | Last modified: | 2023-09-06 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structure of the Catalytic a(0)a Fragment of the Protein Disulfide Isomerase ERp72.
J.Mol.Biol., 401, 2010
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5VXQ
 | | X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5 | | Descriptor: | AMMONIUM ION, DNA/RNA (5'-R(*AP*AP*AP*AP*A)-D(P*A)-R(P*AP*AP*AP*AP*A)-3') | | Authors: | Xie, J, Chen, Y, Wei, X, Kozlov, G, Gehring, K. | | Deposit date: | 2017-05-23 | | Release date: | 2017-08-16 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.002 Å) | | Cite: | Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA.
Nucleic Acids Res., 45, 2017
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