Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8D6V
DownloadVisualize
BU of 8d6v by Molmil
Structure of the Mycobacterium tuberculosis 20S proteasome bound to the C-terminal GQYL motif of the ATP-bound Mpa ATPase
Descriptor: Proteasome subunit alpha, Proteasome subunit beta, Proteasome-associated ATPase
Authors:Xiao, X, Li, H.
Deposit date:2022-06-06
Release date:2022-08-03
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation.
Msphere, 7, 2022
8D6X
DownloadVisualize
BU of 8d6x by Molmil
Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ATP-bound Mpa ATPase
Descriptor: AAA ATPase forming ring-shaped complexes, Proteasome subunit alpha, Proteasome subunit beta, ...
Authors:Xiao, X, Li, H.
Deposit date:2022-06-06
Release date:2022-08-03
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation.
Msphere, 7, 2022
8D4X
DownloadVisualize
BU of 8d4x by Molmil
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a dimeric form
Descriptor: E3 ubiquitin-protein ligase UBR5, ZINC ION
Authors:Wang, F, He, Q, Lin, G, Li, H.
Deposit date:2022-06-02
Release date:2023-04-19
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the human UBR5 E3 ubiquitin ligase.
Structure, 31, 2023
7RD6
DownloadVisualize
BU of 7rd6 by Molmil
Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P state
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Probable phospholipid-transporting ATPase NEO1
Authors:Bai, L, Jain, B.K, You, Q, Duan, H.D, Graham, T.R, Li, H.
Deposit date:2021-07-09
Release date:2021-09-29
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural basis of the P4B ATPase lipid flippase activity.
Nat Commun, 12, 2021
7RD8
DownloadVisualize
BU of 7rd8 by Molmil
Structure of the S. cerevisiae P4B ATPase lipid flippase in the E1-ATP state
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Probable phospholipid-transporting ATPase NEO1
Authors:Bai, L, Jain, B.K, You, Q, Duan, H.D, Graham, T.R, Li, H.
Deposit date:2021-07-09
Release date:2021-09-29
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (5.64 Å)
Cite:Structural basis of the P4B ATPase lipid flippase activity.
Nat Commun, 12, 2021
7RD7
DownloadVisualize
BU of 7rd7 by Molmil
Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P-transition state
Descriptor: MAGNESIUM ION, Probable phospholipid-transporting ATPase NEO1, TETRAFLUOROALUMINATE ION
Authors:Bai, L, Jain, B.K, You, Q, Duan, H.D, Graham, T.R, Li, H.
Deposit date:2021-07-09
Release date:2021-09-29
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural basis of the P4B ATPase lipid flippase activity.
Nat Commun, 12, 2021
7UQK
DownloadVisualize
BU of 7uqk by Molmil
Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7
Authors:Wang, F, Feng, X, Li, H.
Deposit date:2022-04-19
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly.
J.Biol.Chem., 299, 2022
7UQJ
DownloadVisualize
BU of 7uqj by Molmil
Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ATPgS and histone H3 tail in state II
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7, Histone H3, ...
Authors:Wang, F, Feng, X, Li, H.
Deposit date:2022-04-19
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly.
J.Biol.Chem., 299, 2022
7UQI
DownloadVisualize
BU of 7uqi by Molmil
Cryo-EM structure of the S. cerevisiae chromatin remodeler Yta7 hexamer bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase histone chaperone YTA7
Authors:Wang, F, Feng, X, Li, H.
Deposit date:2022-04-19
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The Saccharomyces cerevisiae Yta7 ATPase hexamer contains a unique bromodomain tier that functions in nucleosome disassembly.
J.Biol.Chem., 299, 2022
7RQH
DownloadVisualize
BU of 7rqh by Molmil
Crystal Structure of carboxyl-terminal processing protease A mutant S302A, CtpA_S302A, of Pseudomonas aeruginosa
Descriptor: Probable carboxyl-terminal protease
Authors:Hsu, H.C, Li, H.
Deposit date:2021-08-06
Release date:2022-04-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Pseudomonas aeruginosa C-Terminal Processing Protease CtpA Assembles into a Hexameric Structure That Requires Activation by a Spiral-Shaped Lipoprotein-Binding Partner.
Mbio, 13, 2022
7RPQ
DownloadVisualize
BU of 7rpq by Molmil
Crystal Structure of carboxyl-terminal processing protease A, CtpA, of Pseudomonas aeruginosa
Descriptor: Probable carboxyl-terminal protease
Authors:Hsu, H.C, Li, H.
Deposit date:2021-08-04
Release date:2022-04-27
Last modified:2022-12-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Pseudomonas aeruginosa C-Terminal Processing Protease CtpA Assembles into a Hexameric Structure That Requires Activation by a Spiral-Shaped Lipoprotein-Binding Partner.
Mbio, 13, 2022
8D2P
DownloadVisualize
BU of 8d2p by Molmil
Structure of Acidothermus cellulolyticus Cas9 ternary complex (Target bound)
Descriptor: CRISPR-associated endonuclease, Csn1 family, DNA target strand (5'-D(P*CP*CP*AP*GP*GP*AP*TP*CP*TP*TP*GP*CP*CP*AP*TP*CP*CP*TP*AP*CP*CP*TP*CP*T)-3'), ...
Authors:Rai, J, Das, A, Li, H.
Deposit date:2022-05-30
Release date:2023-12-20
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Coupled catalytic states and the role of metal coordination in Cas9.
Nat Catal, 6, 2023
8D2N
DownloadVisualize
BU of 8d2n by Molmil
Structure of Acidothermus cellulolyticus Cas9 ternary complex (Pre-cleavage)
Descriptor: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3'), ...
Authors:Rai, J, Das, A, Li, H.
Deposit date:2022-05-30
Release date:2023-12-20
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Coupled catalytic states and the role of metal coordination in Cas9.
Nat Catal, 6, 2023
8D2K
DownloadVisualize
BU of 8d2k by Molmil
Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 2)
Descriptor: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*GP*A)-3'), ...
Authors:Rai, J, Das, A, Li, H.
Deposit date:2022-05-30
Release date:2023-12-20
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.43 Å)
Cite:Coupled catalytic states and the role of metal coordination in Cas9.
Nat Catal, 6, 2023
8D2O
DownloadVisualize
BU of 8d2o by Molmil
Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 2)
Descriptor: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3'), ...
Authors:Rai, J, Das, A, Li, H.
Deposit date:2022-05-30
Release date:2023-12-20
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Coupled catalytic states and the role of metal coordination in Cas9.
Nat Catal, 6, 2023
8D2L
DownloadVisualize
BU of 8d2l by Molmil
Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 1)
Descriptor: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*GP*A)-3'), ...
Authors:Rai, J, Das, A, Li, H.
Deposit date:2022-05-30
Release date:2023-12-20
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Coupled catalytic states and the role of metal coordination in Cas9.
Nat Catal, 6, 2023
8D2Q
DownloadVisualize
BU of 8d2q by Molmil
Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 1)
Descriptor: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3'), ...
Authors:Rai, J, Das, A, Li, H.
Deposit date:2022-05-30
Release date:2023-12-20
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Coupled catalytic states and the role of metal coordination in Cas9.
Nat Catal, 6, 2023
7RQF
DownloadVisualize
BU of 7rqf by Molmil
Crystal Structure of LbcA (lipoprotein binding partner of CtpA) of Pseudomonas aeruginosa
Descriptor: TPR repeat-containing protein PA4667
Authors:Hsu, H.C, Li, H.
Deposit date:2021-08-06
Release date:2022-04-27
Last modified:2022-12-14
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Pseudomonas aeruginosa C-Terminal Processing Protease CtpA Assembles into a Hexameric Structure That Requires Activation by a Spiral-Shaped Lipoprotein-Binding Partner.
Mbio, 13, 2022
8E0Q
DownloadVisualize
BU of 8e0q by Molmil
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a C2 symmetric dimeric form
Descriptor: E3 ubiquitin-protein ligase UBR5, ZINC ION
Authors:Wang, F, He, Q, Lin, G, Li, H.
Deposit date:2022-08-09
Release date:2023-04-19
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Structure of the human UBR5 E3 ubiquitin ligase.
Structure, 31, 2023
2YSI
DownloadVisualize
BU of 2ysi by Molmil
Solution structure of the first WW domain from the mouse transcription elongation regulator 1, transcription factor CA150
Descriptor: Transcription elongation regulator 1
Authors:Ohnishi, S, Li, H, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first WW domain from the mouse transcription elongation regulator 1, transcription factor CA150
To be Published
8EWI
DownloadVisualize
BU of 8ewi by Molmil
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a tetrameric form
Descriptor: E3 ubiquitin-protein ligase UBR5, ZINC ION
Authors:Wang, F, He, Q, Lin, G, Li, H.
Deposit date:2022-10-23
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the human UBR5 E3 ubiquitin ligase.
Structure, 31, 2023
2YSF
DownloadVisualize
BU of 2ysf by Molmil
Solution structure of the fourth WW domain from the human E3 ubiquitin-protein ligase Itchy homolog, ITCH
Descriptor: E3 ubiquitin-protein ligase Itchy homolog
Authors:Ohnishi, S, Li, H, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the fourth WW domain from the human E3 ubiquitin-protein ligase Itchy homolog, ITCH
To be Published
3KRD
DownloadVisualize
BU of 3krd by Molmil
Crystal Structure of Mycobacterium Tuberculosis Proteasome in complex with Fellutamide B
Descriptor: (3R)-3-HYDROXYDODECANOIC ACID, Fellutamide B, Proteasome subunit alpha, ...
Authors:Li, D, Li, H.
Deposit date:2009-11-18
Release date:2010-09-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Fellutamide B is a potent inhibitor of the Mycobacterium tuberculosis proteasome.
Arch.Biochem.Biophys., 501, 2010
5BKH
DownloadVisualize
BU of 5bkh by Molmil
The splicing activity and an alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein
Descriptor: DNA polymerase II large subunit
Authors:Li, Z, Li, H.
Deposit date:2021-03-19
Release date:2021-08-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:An alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein.
Sci Rep, 11, 2021
3ER9
DownloadVisualize
BU of 3er9 by Molmil
Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, 5'-R(UP*U)-3', CALCIUM ION, ...
Authors:Li, C, Li, H, Zhou, S, Poulos, T.L, Gershon, P.D.
Deposit date:2008-10-01
Release date:2009-06-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Polymerase Translocation with Respect to Single-Stranded Nucleic Acid: Looping or Wrapping of Primer around a Poly(A) Polymerase
Structure, 17, 2009

221371

数据于2024-06-19公开中

PDB statisticsPDBj update infoContact PDBjnumon