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Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C3HR3_4r
Authors:	Bera, A.K, Bethel, N.P, Kang, A.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8EOX

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C4HR1_4r
Authors:	Bera, A.K, Bethel, N.P.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.3 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

7M0Q

Crystal structure of deep network hallucinated protein 0738_mod
Descriptor:	Network hallucinated protein 0738_mod
Authors:	Pellock, S.J, Bera, A.K, Anishchenko, I, Baker, D.
Deposit date:	2021-03-11
Release date:	2021-12-29
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	De novo protein design by deep network hallucination. Nature, 600, 2021

7LDF

High resolution NMR solution structure of a de novo designed minimal thioredoxin fold protein
Descriptor:	Minimal thioredoxin fold protein, ems_thioM_802
Authors:	Urbauer, J.L, Strauch, E.M.
Deposit date:	2021-01-13
Release date:	2022-07-13
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	Sampling of structure and sequence space of small protein folds. Nat Commun, 13, 2022

7M5T

Solution NMR structure of de novo designed protein 0515
Descriptor:	De novo designed protein 0515
Authors:	Ramelot, T.A, Hao, J, Baker, D, Montelione, G.T.
Deposit date:	2021-03-24
Release date:	2021-12-15
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	De novo protein design by deep network hallucination. Nature, 600, 2021

6V67

Apo Structure of the De Novo PD-1 Binding Miniprotein GR918.2
Descriptor:	PD-1 Binding Miniprotein GR918.2
Authors:	Bick, M.J, Bryan, C.M, Baker, D, Dimaio, F, Kang, A.
Deposit date:	2019-12-04
Release date:	2020-12-09
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.07 Å)
Cite:	Computational design of a synthetic PD-1 agonist. Proc.Natl.Acad.Sci.USA, 118, 2021

7UR7

17_bp_sh3, a small beta-barrel de novo designed protein
Descriptor:	17_bp_sh3
Authors:	Bera, A.K, Kim, D, Baker, D.
Deposit date:	2022-04-21
Release date:	2023-03-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.21 Å)
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7UWY

NMR solution structure of the De novo designed small beta-barrel protein 29_bp_sh3
Descriptor:	De novo designed small beta-barrel protein 29_bp_sh3
Authors:	Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
Deposit date:	2022-05-04
Release date:	2023-03-22
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7UWZ

NMR solution structure of the De novo designed small beta-barrel protein 33_bp_sh3
Descriptor:	De novo designed small beta-barrel protein 33_bp_sh3
Authors:	Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
Deposit date:	2022-05-04
Release date:	2023-03-22
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7UR8

170_h_ob, a small beta-barrel de novo designed protein
Descriptor:	170_h_ob
Authors:	Bera, A.K, Kim, D, Baker, D.
Deposit date:	2022-04-21
Release date:	2023-03-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

8GAA

C6HR1_4r: Extendable repeat protein hexamer
Descriptor:	C6HR1_4r
Authors:	Bethel, N.P, Borst, A.J, Baker, D.
Deposit date:	2023-02-22
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (4.24 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8G8I

C3HR3_9r_shift4: Extendable repeat protein fiber
Descriptor:	C3HR3_9r_shift4
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-17
Release date:	2023-08-30
Last modified:	2023-12-13
Method:	ELECTRON MICROSCOPY (3.92 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GA9

C4HR1_4r: Extendable repeat protein tetramer
Descriptor:	C4HR1_4r
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-22
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.71 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GAQ

C5HR2_4r: Extendable repeat protein pentamer
Descriptor:	C5HR2_4r
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-23
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.73 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GL3

De novo design of monomeric helical bundles for pH-controlled membrane lysis
Descriptor:	pRLB-519
Authors:	Goldbach, N, Bera, A.K, Baker, D, Kang, A.
Deposit date:	2023-03-20
Release date:	2023-09-06
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	De novo design of monomeric helical bundles for pH-controlled membrane lysis. Protein Sci., 32, 2023

8ERW

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C2HR4_8r
Authors:	Bick, M.J, Parmeggiani, F, Bethel, N.P, Sankaran, B, Baker, D.
Deposit date:	2022-10-12
Release date:	2023-08-23
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.88 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8FBK

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_65
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBJ

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_60
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.25 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBO

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_102
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.4 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBN

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_73
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.04 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBI

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_39
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.61 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

6CZI

Structure of a redesigned beta barrel, mFAP1, bound to DFHBI
Descriptor:	(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, mFAP1
Authors:	Doyle, L.A, Stoddard, B.L.
Deposit date:	2018-04-09
Release date:	2018-09-19
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018

6CZG

Structure of a redesigned beta barrel, b11L5F_LGL
Descriptor:	b11L5F_LGL
Authors:	Doyle, L.A, Stoddard, B.L.
Deposit date:	2018-04-09
Release date:	2018-09-19
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018

6CZJ

Structure of a redesigned beta barrel, b10
Descriptor:	SULFATE ION, b10
Authors:	Doyle, L.A, Stoddard, B.L.
Deposit date:	2018-04-09
Release date:	2018-09-19
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018

6CZH

Structure of a redesigned beta barrel, mFAP0, bound to DFHBI
Descriptor:	(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, mFAP0
Authors:	Doyle, L.A, Stoddard, B.L.
Deposit date:	2018-04-09
Release date:	2018-09-19
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018

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