Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3WHB
DownloadVisualize
BU of 3whb by Molmil
Crystal structure of FadR from Bacillus subtilis, a transcriptional regulator involved in the regulation of fatty acid degradation
Descriptor: DODECYL-COA, Fatty acid metabolism regulator protein
Authors:Fujihashi, M, Nakatani, T, Miki, K.
Deposit date:2013-08-23
Release date:2014-03-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation.
Proteins, 82, 2014
3WHC
DownloadVisualize
BU of 3whc by Molmil
Crystal structure of a transcriptional regulator FadR from Bacillus subtilis in complex with stearoyl-CoA
Descriptor: Fatty acid metabolism regulator protein, STEAROYL-COENZYME A
Authors:Fujihashi, M, Nakatani, T, Miki, K.
Deposit date:2013-08-23
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation.
Proteins, 82, 2014
3WR2
DownloadVisualize
BU of 3wr2 by Molmil
RNase Po1 complexed with 3'GMP
Descriptor: GUANOSINE-3'-MONOPHOSPHATE, Guanyl-specific ribonuclease Po1
Authors:Hara, Y, Katsutani, T, Kobayashi, H, Suzuki, M.
Deposit date:2014-02-13
Release date:2015-02-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:RNase Po1 complexed with 3'GMP
to be published
7PB9
DownloadVisualize
BU of 7pb9 by Molmil
Crystal structure of tandem WH domains of Vps25 from Odinarchaeota
Descriptor: Tandem WH domains of Vps25
Authors:Salzer, R, Bellini, D, Papatziamou, D, Robinson, N.P, Lowe, J.
Deposit date:2021-08-01
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Asgard archaea shed light on the evolutionary origins of the eukaryotic ubiquitin-ESCRT machinery.
Nat Commun, 13, 2022
7PQR
DownloadVisualize
BU of 7pqr by Molmil
LsAA9A expressed in E. coli
Descriptor: ACETATE ION, Auxiliary activity 9, CHLORIDE ION, ...
Authors:Muderspach, S.J, Metherall, J, Ipsen, J, Rollan, C.H, Norholm, M, Johansen, K.S, Lo Leggio, L.
Deposit date:2021-09-20
Release date:2022-08-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Changes in active-site geometry on X-ray photoreduction of a lytic polysaccharide monooxygenase active-site copper and saccharide binding.
Iucrj, 9, 2022
6JMF
DownloadVisualize
BU of 6jmf by Molmil
Crystal structure of human tyrosine-protein kinase Fes/Fps in complex with compound 4
Descriptor: 6-{[(1R,2S)-2-aminocyclohexyl]amino}-5-cyano-2-[(3-methylphenyl)amino]pyridine-3-carboxamide, SULFATE ION, Tyrosine-protein kinase Fes/Fps
Authors:Baba, D, Hanzawa, H.
Deposit date:2019-03-08
Release date:2019-06-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of Novel Pyrido-pyridazinone Derivatives as FER Tyrosine Kinase Inhibitors with Antitumor Activity.
Acs Med.Chem.Lett., 10, 2019
5Y0P
DownloadVisualize
BU of 5y0p by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP
Descriptor: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0S
DownloadVisualize
BU of 5y0s by Molmil
Crystal structure of apo Thermotoga maritima TmcAL(Form II)
Descriptor: 1,2-ETHANEDIOL, Thermotoga maritima TmcAL
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0R
DownloadVisualize
BU of 5y0r by Molmil
Crystal structure of Thermotoga maritima TmcAL (apo, form I)
Descriptor: TmTmcAL(SeMet)
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2018-12-26
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0N
DownloadVisualize
BU of 5y0n by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2018-12-26
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0Q
DownloadVisualize
BU of 5y0q by Molmil
Crystal structure of BsTmcAL bound with AMPCPP
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0O
DownloadVisualize
BU of 5y0o by Molmil
Crystal structure of apo BsTmcAL
Descriptor: UPF0348 protein B4417_3650
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0T
DownloadVisualize
BU of 5y0t by Molmil
Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II)
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, PENTAETHYLENE GLYCOL, ...
Authors:Yamashita, S, Tomita, K.
Deposit date:2017-07-18
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5DMQ
DownloadVisualize
BU of 5dmq by Molmil
Crystal structure of mouse eRF1 in complex with Reverse Transcriptase (RT) of Moloney Murine Leukemia Virus
Descriptor: Eukaryotic peptide chain release factor subunit 1, Reverse transcriptase/ribonuclease H p80
Authors:Tang, T, Song, H.
Deposit date:2015-09-09
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis of suppression of host translation termination by Moloney Murine Leukemia Virus
Nat Commun, 7, 2016
8YRP
DownloadVisualize
BU of 8yrp by Molmil
SARS-CoV-2 Delta Spike in complex with JM-1A
Descriptor: JM-1A Heavy Chain, JM-1A Light Chain, Spike glycoprotein
Authors:Nguyen, V.H.T, Chen, X.
Deposit date:2024-03-21
Release date:2024-06-05
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine.
Plos Pathog., 20, 2024
8YRO
DownloadVisualize
BU of 8yro by Molmil
SARS-CoV-2 Delta Spike in complex with JL-8C
Descriptor: JL-8C Heavy Chain, JL-8C Light Chain, Spike glycoprotein
Authors:Nguyen, V.H.T, Chen, X.
Deposit date:2024-03-21
Release date:2024-06-05
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine.
Plos Pathog., 20, 2024
8YZ5
DownloadVisualize
BU of 8yz5 by Molmil
SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Descriptor: Fab heavy chain of JE-5C, Fab light chain of JE-5C, Spike glycoprotein
Authors:Chen, X, Wu, Y.-M.
Deposit date:2024-04-06
Release date:2024-06-05
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine.
Plos Pathog., 20, 2024
8YZ6
DownloadVisualize
BU of 8yz6 by Molmil
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab heavy chain of JH-8B, ...
Authors:Chen, X, Wu, Y.-M.
Deposit date:2024-04-06
Release date:2024-06-05
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (4.55 Å)
Cite:The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine.
Plos Pathog., 20, 2024
3KLR
DownloadVisualize
BU of 3klr by Molmil
Bovine H-protein at 0.88 angstrom resolution
Descriptor: GLYCEROL, Glycine cleavage system H protein, SULFATE ION
Authors:Higashiura, A, Kurakane, T, Matsuda, M, Suzuki, M, Inaka, K, Sato, M, Tanaka, H, Fujiwara, K, Nakagawa, A.
Deposit date:2009-11-09
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution
Acta Crystallogr.,Sect.D, 66, 2010
6U5E
DownloadVisualize
BU of 6u5e by Molmil
RT XFEL structure of CypA solved using celloluse carrier media
Descriptor: Peptidyl-prolyl cis-trans isomerase A
Authors:Wolff, A.M, Nango, E, Nakane, T, Young, I.D, Brewster, A.S, Sugahara, M, Tanaka, R, Sauter, N.K, Tono, K, Iwata, S, Fraser, J.S, Thompson, M.C.
Deposit date:2019-08-27
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals
Iucrj, 7, 2020
5WR2
DownloadVisualize
BU of 5wr2 by Molmil
Thermolysin, SFX liganded form with oil-based carrier
Descriptor: CALCIUM ION, N-[(benzyloxy)carbonyl]-L-aspartic acid, Thermolysin, ...
Authors:Kunishima, N, Naitow, H, Matsuura, Y.
Deposit date:2016-11-29
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
5WR4
DownloadVisualize
BU of 5wr4 by Molmil
Thermolysin, SFX unliganded form with oil-based carrier
Descriptor: CALCIUM ION, Thermolysin, ZINC ION
Authors:Kunishima, N, Naitow, H, Matsuura, Y.
Deposit date:2016-11-29
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Acta Crystallogr D Struct Biol, 73, 2017
6U5G
DownloadVisualize
BU of 6u5g by Molmil
MicroED structure of a FIB-milled CypA Crystal
Descriptor: Peptidyl-prolyl cis-trans isomerase A
Authors:Wolff, A.M, Martynowycz, M.W, Zhao, W, Gonen, T, Fraser, J.S, Thompson, M.C.
Deposit date:2019-08-27
Release date:2020-01-29
Last modified:2023-10-11
Method:ELECTRON CRYSTALLOGRAPHY (2.5 Å)
Cite:Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals
Iucrj, 7, 2020
6U5D
DownloadVisualize
BU of 6u5d by Molmil
RT XFEL structure of CypA solved using LCP injection system
Descriptor: Peptidyl-prolyl cis-trans isomerase A
Authors:Wolff, A.M, Young, I.D, Sierra, R.G, Brewster, A.S, Koralek, J.D, Boutet, S, Sauter, N.K, Fraser, J.S, Thompson, M.C.
Deposit date:2019-08-27
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals
Iucrj, 7, 2020
5WJJ
DownloadVisualize
BU of 5wjj by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[1,2-b]pyridazine-based p38 MAP Kinase Inhibitors
Descriptor: Mitogen-activated protein kinase 14, N-{4-[2-(4-fluoro-3-methylphenyl)imidazo[1,2-b]pyridazin-3-yl]pyridin-2-yl}-2-methyl-1-oxo-1lambda~5~-pyridine-4-carboxamide
Authors:Snell, G.P, Okada, K, Bragstad, K, Sang, B.-C.
Deposit date:2017-07-23
Release date:2018-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-based design, synthesis, and biological evaluation of imidazo[1,2-b]pyridazine-based p38 MAP kinase inhibitors.
Bioorg. Med. Chem., 26, 2018

225946

数据于2024-10-09公开中

PDB statisticsPDBj update infoContact PDBjnumon