Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5X18
DownloadVisualize
BU of 5x18 by Molmil
Crystal structure of Casein kinase I homolog 1
Descriptor: Casein kinase I homolog 1, GLYCEROL, MALONIC ACID
Authors:Kikuchi, M, Shinohara, Y, Ueda, H.R, Umehara, T.
Deposit date:2017-01-25
Release date:2017-10-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock
Mol. Cell, 67, 2017
2FPF
DownloadVisualize
BU of 2fpf by Molmil
Crystal structure of the ib1 sh3 dimer at low resolution
Descriptor: C-jun-amino-terminal kinase interacting protein 1
Authors:Kristensen, O, Dar, I, Gajhede, M.
Deposit date:2006-01-16
Release date:2006-02-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:A unique set of SH3-SH3 interactions controls IB1 homodimerization
Embo J., 25, 2006
8H79
DownloadVisualize
BU of 8h79 by Molmil
The crystal structure of cyanorhodopsin-II (CyR-II) P7104R from Nodosilinea nodulosa PCC 7104
Descriptor: CHLORIDE ION, HEXADECANE, HEXANE, ...
Authors:Hosaka, T, Kimura-Someya, T, Shirouzu, M.
Deposit date:2022-10-19
Release date:2023-10-25
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Cyanorhodopsin-II: diverse proton-pumping rhodopsins in the cyanobacterial lineage illuminated by large-scale metagenomic
To Be Published
5WOE
DownloadVisualize
BU of 5woe by Molmil
Solution structure of the sorting nexin 25 phox-homology domain
Descriptor: Sorting nexin-25
Authors:Chin, Y.K.Y, Mas, C, Mobli, M, Collins, B.M.
Deposit date:2017-08-01
Release date:2018-08-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Classification of the human phox homology (PX) domains based on their phosphoinositide binding specificities.
Nat Commun, 10, 2019
5FVC
DownloadVisualize
BU of 5fvc by Molmil
Structure of RNA-bound decameric HMPV nucleoprotein
Descriptor: HMPV NUCLEOPROTEIN, RNA
Authors:Renner, M, Bertinelli, M, Leyrat, C, Paesen, G.C, Saraiva de Oliveira, L.F, Huiskonen, J.T, Grimes, J.M.
Deposit date:2016-02-05
Release date:2016-02-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (4.17 Å)
Cite:Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein.
Elife, 5, 2016
7S5Q
DownloadVisualize
BU of 7s5q by Molmil
Crystal structure of SARS-CoV-2 B.1.351 variant receptor binding domain in complex with neutralizing antibodies CS44 and COVA1-16
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, COVA1-16 Heavy chain, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2021-09-11
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies.
Science, 375, 2022
7S5P
DownloadVisualize
BU of 7s5p by Molmil
Crystal structure of SARS-CoV-2 B.1.351 variant receptor binding domain in complex with neutralizing antibody CS23
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CS23 Heavy chain, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2021-09-11
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies.
Science, 375, 2022
7S5R
DownloadVisualize
BU of 7s5r by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibodies CV07-287 and COVA1-16
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, COVA1-16 Heavy chain, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2021-09-11
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:SARS-CoV-2 Beta variant infection elicits potent lineage-specific and cross-reactive antibodies.
Science, 375, 2022
2FPD
DownloadVisualize
BU of 2fpd by Molmil
Sad structure determination: crystal structure of the intrinsic dimerization sh3 domain of the ib1 scaffold protein
Descriptor: C-jun-amino-terminal kinase interacting protein 1, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Kristensen, O, Dar, I, Gajhede, M.
Deposit date:2006-01-16
Release date:2006-02-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A unique set of SH3-SH3 interactions controls IB1 homodimerization
Embo J., 25, 2006
5FPK
DownloadVisualize
BU of 5fpk by Molmil
MONOMERIC RADA IN COMPLEX WITH FATA TETRAPEPTIDE
Descriptor: DNA REPAIR AND RECOMBINATION PROTEIN RADA, FHTG PEPTIDE, PHOSPHATE ION
Authors:Scott, D.E, Marsh, M, Blundell, T.L, Abell, C, Hyvonen, M.
Deposit date:2015-12-01
Release date:2016-03-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.343 Å)
Cite:Structure Activity Relationship of the Peptide Binding Motif Mediating the Rad51:Brca2 Protein-Protein Interaction.
FEBS Lett., 590, 2016
8HX9
DownloadVisualize
BU of 8hx9 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae with chorismate
Descriptor: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, 4-amino-4-deoxychorismate synthase, FORMIC ACID, ...
Authors:Nakamichi, Y, Watanabe, M.
Deposit date:2023-01-04
Release date:2023-10-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
5FDL
DownloadVisualize
BU of 5fdl by Molmil
Crystal Structure of K103N/Y181C Mutant HIV-1 Reverse Transcriptase (RT) in Complex with IDX899
Descriptor: P51 Reverse transcriptase, P66 Reverse transcriptase, methyl (R)-(2-carbamoyl-5-chloro-1H-indol-3-yl)[3-(2-cyanoethyl)-5-methylphenyl]phosphinate
Authors:Dousson, C.B, Alexandre, F.-R, Convard, T, Fisher, M, Lamers, M.B.A.C, Leonard, P.M.
Deposit date:2015-12-16
Release date:2016-02-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Discovery of the Aryl-phospho-indole IDX899, a Highly Potent Anti-HIV Non-nucleoside Reverse Transcriptase Inhibitor.
J.Med.Chem., 59, 2016
8HX6
DownloadVisualize
BU of 8hx6 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae
Descriptor: 4-amino-4-deoxychorismate synthase, D-MALATE, MAGNESIUM ION, ...
Authors:Nakamichi, Y, Watanabe, M.
Deposit date:2023-01-04
Release date:2023-10-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
5X94
DownloadVisualize
BU of 5x94 by Molmil
Crystal structure of SHP2_SH2-CagA EPIYA_D peptide complex
Descriptor: Cag pathogenicity island protein, Tyrosine-protein phosphatase non-receptor type 11
Authors:Senda, M, Senda, T.
Deposit date:2017-03-05
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Differential Mechanisms for SHP2 Binding and Activation Are Exploited by Geographically Distinct Helicobacter pylori CagA Oncoproteins.
Cell Rep, 20, 2017
8HX8
DownloadVisualize
BU of 8hx8 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with chorismate
Descriptor: 4-amino-4-deoxychorismate synthase, MAGNESIUM ION, SUCCINIC ACID, ...
Authors:Nakamichi, Y, Watanabe, M.
Deposit date:2023-01-04
Release date:2023-10-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
6R21
DownloadVisualize
BU of 6r21 by Molmil
Cryo-EM structure of T7 bacteriophage fiberless tail complex
Descriptor: Portal protein, Tail tubular protein gp11, Tail tubular protein gp12
Authors:Cuervo, A, Fabrega-Ferrer, M, Machon, C, Conesa, J.J, Perez-Ruiz, M, Coll, M, Carrascosa, J.L.
Deposit date:2019-03-15
Release date:2019-09-04
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Structures of T7 bacteriophage portal and tail suggest a viral DNA retention and ejection mechanism.
Nat Commun, 10, 2019
8HX7
DownloadVisualize
BU of 8hx7 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with L-glutamine
Descriptor: 4-amino-4-deoxychorismate synthase, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Nakamichi, Y, Watanabe, M.
Deposit date:2023-01-04
Release date:2023-10-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
2G1Y
DownloadVisualize
BU of 2g1y by Molmil
Ketopiperazine-Based Renin Inhibitors: Optimization of the "C" Ring
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL)-4-(3-METHOXYPROPYL)-2,2-DIMETHYL-2H-1,4-BENZOXAZIN-3(4H)-ONE, Renin
Authors:Holsworth, D.D, Jalaiea, M, Zhanga, E, Mcconnella, P.
Deposit date:2006-02-15
Release date:2006-06-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ketopiperazine-Based Renin Inhibitors: Optimization of the "C" Ring
BIOORG.MED.CHEM.LETT., 16, 2006
5JD4
DownloadVisualize
BU of 5jd4 by Molmil
Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, BENZAMIDINE, CHLORIDE ION, ...
Authors:Stogios, P.J, Xu, X, Alcaide, M, Yim, V, Cui, H, Martinez-Martinez, M, Ferrer, M, Savchenko, A.
Deposit date:2016-04-15
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain
To Be Published
5XH8
DownloadVisualize
BU of 5xh8 by Molmil
Aspergillus kawachii beta-fructofuranosidase complexed with glycerol
Descriptor: ACETATE ION, Extracellular invertase, GLYCEROL, ...
Authors:Nagaya, M, Tonozuka, T.
Deposit date:2017-04-19
Release date:2017-07-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a beta-fructofuranosidase with high transfructosylation activity from Aspergillus kawachii
Biosci. Biotechnol. Biochem., 81, 2017
2FPE
DownloadVisualize
BU of 2fpe by Molmil
Conserved dimerization of the ib1 src-homology 3 domain
Descriptor: C-jun-amino-terminal kinase interacting protein 1, HEXAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Guenat, S, Dar, I, Bonny, C, Kastrup, J.S, Gajhede, M, Kristensen, O.
Deposit date:2006-01-16
Release date:2006-02-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A unique set of SH3-SH3 interactions controls IB1 homodimerization
Embo J., 25, 2006
5JMF
DownloadVisualize
BU of 5jmf by Molmil
Heparinase III-BT4657 gene product
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Heparinase III protein, ...
Authors:Ulaganathan, T.S, Shi, R, Yao, D, Garron, M.-L, Cherney, M, Cygler, M.
Deposit date:2016-04-28
Release date:2016-05-25
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (1.854 Å)
Cite:Conformational flexibility of PL12 family heparinases: structure and substrate specificity of heparinase III from Bacteroides thetaiotaomicron (BT4657).
Glycobiology, 27, 2017
5X4U
DownloadVisualize
BU of 5x4u by Molmil
PAC from Oscillatoriaacuminata after 60 seconds photoactivation
Descriptor: FLAVIN MONONUCLEOTIDE, Photoactivated adenylyl cyclase
Authors:Ohki, M, Park, S.-Y.
Deposit date:2017-02-14
Release date:2017-07-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular mechanism of photoactivation of a light-regulated adenylate cyclase.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2G1R
DownloadVisualize
BU of 2g1r by Molmil
Ketopiperazine-Based Renin Inhibitors: Optimization of the C Ring
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-{2-[6-(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL)-2,2-DIMETHYL-3-OXO-2,3-DIHYDRO-4H-1,4-BENZOXAZIN-4-YL]ETHYL}ACETAMIDE, Renin
Authors:Holsworth, D.D, Jalaiea, M, Zhanga, E, Mcconnella, P.
Deposit date:2006-02-14
Release date:2006-06-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Ketopiperazine-Based Renin Inhibitors: Optimization of the "C" Ring
BIOORG.MED.CHEM.LETT., 16, 2006
5X7G
DownloadVisualize
BU of 5x7g by Molmil
Crystal Structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase
Descriptor: CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, GLYCEROL, ...
Authors:Fujimoto, Z, Kishine, N, Suzuki, N, Suzuki, R, Momma, M, Funane, K.
Deposit date:2017-02-26
Release date:2017-04-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase
Biosci. Rep., 37, 2017

221051

数据于2024-06-12公开中

PDB statisticsPDBj update infoContact PDBjnumon