Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1MXK
DownloadVisualize
BU of 1mxk by Molmil
NMR Structure of HO2-Co(III)bleomycin A(2) Bound to d(GGAAGCTTCC)(2)
Descriptor: 5'-D(*GP*GP*AP*AP*GP*CP*TP*TP*CP*C)-3', BLEOMYCIN A2, COBALT (III) ION, ...
Authors:Zhao, C, Xia, C, Mao, Q, Forsterling, H, DeRose, E, Antholine, W.E, Subczynski, W.K, Petering, D.H.
Deposit date:2002-10-02
Release date:2002-10-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structures of HO(2)-Co(III)bleomycin A(2) Bound to d(GAGCTC)(2) and d(GGAAGCTTCC)(2): Structure-Reactivity Relationships of Co and Fe Bleomycins
J.Inorg.Biochem., 91, 2002
1MTG
DownloadVisualize
BU of 1mtg by Molmil
NMR Structure of HO2-Co(III)bleomycin A(2) bound to d(GAGCTC)(2)
Descriptor: 5'-D(*GP*AP*GP*CP*TP*C)-3', BLEOMYCIN A2, COBALT (III) ION, ...
Authors:Zhao, C, Xia, C, Mao, Q, Forsterling, H, DeRose, E, Antholine, W.E, Subczynski, W.K, Petering, D.H.
Deposit date:2002-09-20
Release date:2002-10-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structures of HO(2)-Co(III)bleomycin A(2) Bound to d(GAGCTC)(2) and d(GGAAGCTTCC)(2): Structure-Reactivity Relationships of Co and Fe Bleomycins
J.Inorg.Biochem., 91, 2002
3M63
DownloadVisualize
BU of 3m63 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, Ubiquitin conjugation factor E4, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010
3M62
DownloadVisualize
BU of 3m62 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Rad23
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, UV excision repair protein RAD23, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010
2IJX
DownloadVisualize
BU of 2ijx by Molmil
Crystal structure of PCNA3 monomer from Sulfolobus solfataricus.
Descriptor: 1,2-ETHANEDIOL, DNA polymerase sliding clamp A
Authors:Hlinkova, V, Ling, H.
Deposit date:2006-10-01
Release date:2007-10-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening.
Acta Crystallogr.,Sect.D, 64, 2008
1QZT
DownloadVisualize
BU of 1qzt by Molmil
Phosphotransacetylase from Methanosarcina thermophila
Descriptor: Phosphate acetyltransferase, SULFATE ION
Authors:Iyer, P.P, Lawrence, S.H, Luther, K.B, Rajashankar, K.R, Yennawar, H.P, Ferry, J.G, Schindelin, H.
Deposit date:2003-09-17
Release date:2004-06-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of phosphotransacetylase from the methanogenic archaeon Methanosarcina thermophila.
STRUCTURE, 12, 2004
6CST
DownloadVisualize
BU of 6cst by Molmil
Structure of human DNA polymerase kappa with DNA
Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, CHLORIDE ION, ...
Authors:Jha, V, Ling, H.
Deposit date:2018-03-21
Release date:2019-01-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:2.0 angstrom resolution crystal structure of human pol kappa reveals a new catalytic function of N-clasp in DNA replication.
Sci Rep, 8, 2018
2FTS
DownloadVisualize
BU of 2fts by Molmil
Crystal structure of the glycine receptor-gephyrin complex
Descriptor: Glycine receptor beta chain precursor, gephyrin
Authors:Kim, E.Y, Schindelin, H.
Deposit date:2006-01-24
Release date:2006-03-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Deciphering the structural framework of glycine receptor anchoring by gephyrin.
Embo J., 25, 2006
5W2A
DownloadVisualize
BU of 5w2a by Molmil
Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dCMPNPP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*TP*GP*(LDG)P*CP*TP*GP*AP*TP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*AP*TP*CP*AP*G)-3'), ...
Authors:Jha, V.K, Ling, H.
Deposit date:2017-06-06
Release date:2017-10-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of Error-Free DNA Replication Past Lucidin-Derived DNA Damage by Human DNA Polymerase kappa.
Chem. Res. Toxicol., 30, 2017
6BRX
DownloadVisualize
BU of 6brx by Molmil
Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, Cisplatin, DI(HYDROXYETHYL)ETHER, ...
Authors:Jha, V.K, Ling, H.
Deposit date:2017-12-01
Release date:2018-08-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Human DNA Polymerase Kappa to Bypass Cisplatin Intrastrand Cross-Link (Pt-GG) Lesion as an Efficient and Accurate Extender.
J. Mol. Biol., 430, 2018
6BS1
DownloadVisualize
BU of 6bs1 by Molmil
Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, Cisplatin, DNA (5'-D(*TP*AP*CP*TP*GP*GP*TP*AP*TP*GP*TP*AP*T)-3'), ...
Authors:Jha, V.K, Ling, H.
Deposit date:2017-12-01
Release date:2018-08-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural Basis for Human DNA Polymerase Kappa to Bypass Cisplatin Intrastrand Cross-Link (Pt-GG) Lesion as an Efficient and Accurate Extender.
J. Mol. Biol., 430, 2018
8TG1
DownloadVisualize
BU of 8tg1 by Molmil
Caldicellulosiruptor saccharolyticus periplasmic urea-binding protein
Descriptor: BROMIDE ION, Extracellular ligand-binding receptor, UREA
Authors:Allert, M.J, Kumar, S, Wang, Y, Beese, L.S, Hellinga, H.W.
Deposit date:2023-07-12
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Structure-based functional analysis reveals multiple roles and widespread use of urea-binding proteins in nitrogen metabolism
To Be Published
5AES
DownloadVisualize
BU of 5aes by Molmil
Crystal Structure of murine Chronophin (Pyridoxal Phosphate Phosphatase) in Complex with a PNP-derived Inhibitor
Descriptor: GLYCEROL, MAGNESIUM ION, PYRIDOXAL PHOSPHATE PHOSPHATASE, ...
Authors:Knobloch, G, Jabari, N, Koehn, M, Gohla, A, Schindelin, H.
Deposit date:2015-01-09
Release date:2015-04-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Synthesis of Hydrolysis-Resistant Pyridoxal 5'-Phosphate Analogs and Their Biochemical and X-Ray Crystallographic Characterization with the Pyridoxal Phosphatase Chronophin.
Bioorg.Med.Chem., 23, 2015
2HBB
DownloadVisualize
BU of 2hbb by Molmil
Crystal Structure of the N-terminal Domain of Ribosomal Protein L9 (NTL9)
Descriptor: 50S ribosomal protein L9, ZINC ION
Authors:Cho, J.-H, Kim, E.Y, Schindelin, H, Raleigh, D.P.
Deposit date:2006-06-14
Release date:2007-05-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Energetically significant networks of coupled interactions within an unfolded protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
2HBA
DownloadVisualize
BU of 2hba by Molmil
Crystal Structure of N-terminal Domain of Ribosomal Protein L9 (NTL9) K12M
Descriptor: 50S ribosomal protein L9, CHLORIDE ION, IMIDAZOLE, ...
Authors:Cho, J.-H, Kim, E.Y, Schindelin, H, Raleigh, D.P.
Deposit date:2006-06-14
Release date:2007-05-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Energetically significant networks of coupled interactions within an unfolded protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
5W2C
DownloadVisualize
BU of 5w2c by Molmil
Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dAMPNPP
Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DI(HYDROXYETHYL)ETHER, ...
Authors:Jha, V.K, Ling, H.
Deposit date:2017-06-06
Release date:2017-10-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of Error-Free DNA Replication Past Lucidin-Derived DNA Damage by Human DNA Polymerase kappa.
Chem. Res. Toxicol., 30, 2017
2HVF
DownloadVisualize
BU of 2hvf by Molmil
Crystal Structure of N-terminal Domain of Ribosomal Protein L9 (NTL9), G34dA
Descriptor: 50S ribosomal protein L9, ACETIC ACID, CHLORIDE ION, ...
Authors:Anil, B, Kim, E.Y, Cho, J.H, Schindelin, H, Raleigh, D.P.
Deposit date:2006-07-28
Release date:2007-06-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Detecting and quantifying strain in protein folding
To be Published
5A4H
DownloadVisualize
BU of 5a4h by Molmil
Solution structure of the lipid droplet anchoring peptide of CGI-58 bound to DPC micelles
Descriptor: 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5
Authors:Boeszoermenyi, A, Arthanari, H, Wagner, G, Nagy, H.M, Zangger, K, Lindermuth, H, Oberer, M.
Deposit date:2015-06-09
Release date:2015-09-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a Cgi-58 Motif Provides the Molecular Basis of Lipid Droplet Anchoring.
J.Biol.Chem., 290, 2015
2IBK
DownloadVisualize
BU of 2ibk by Molmil
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, 1,2-ETHANEDIOL, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*AP*T)-3', ...
Authors:Bauer, J, Ling, H, Sayer, J.M, Xing, G, Yagi, H, Jerina, D.M.
Deposit date:2006-09-11
Release date:2007-09-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A structural gap in Dpo4 supports mutagenic bypass of a major benzo[a]pyrene dG adduct in DNA through template misalignment.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2IA6
DownloadVisualize
BU of 2ia6 by Molmil
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, 1,2-ETHANEDIOL, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*A)-3', ...
Authors:Bauer, J, Ling, H, Sayer, J.M, Xing, G, Yagi, H, Jerina, D.M.
Deposit date:2006-09-07
Release date:2007-09-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A structural gap in Dpo4 supports mutagenic bypass of a major benzo[a]pyrene dG adduct in DNA through template misalignment.
Proc.Natl.Acad.Sci.Usa, 104, 2007
1RGC
DownloadVisualize
BU of 1rgc by Molmil
THE COMPLEX BETWEEN RIBONUCLEASE T1 AND 3'-GUANYLIC ACID SUGGESTS GEOMETRY OF ENZYMATIC REACTION PATH. AN X-RAY STUDY
Descriptor: CALCIUM ION, GUANOSINE-3'-MONOPHOSPHATE, RIBONUCLEASE T1
Authors:Heydenreich, A, Koellner, G, Choe, H.W, Cordes, F, Kisker, C, Schindelin, H, Adamiak, R, Hahn, U, Saenger, W.
Deposit date:1993-05-12
Release date:1994-01-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:The complex between ribonuclease T1 and 3'GMP suggests geometry of enzymic reaction path. An X-ray study.
Eur.J.Biochem., 218, 1993
2FU3
DownloadVisualize
BU of 2fu3 by Molmil
Crystal structure of gephyrin E-domain
Descriptor: gephyrin
Authors:Kim, E.Y, Schindelin, H.
Deposit date:2006-01-25
Release date:2006-03-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Deciphering the structural framework of glycine receptor anchoring by gephyrin.
Embo J., 25, 2006
2AF4
DownloadVisualize
BU of 2af4 by Molmil
Phosphotransacetylase from Methanosarcina thermophila co-crystallized with coenzyme A
Descriptor: COENZYME A, Phosphate acetyltransferase
Authors:Lawrence, S.H, Luther, K.B, Ferry, J.G, Schindelin, H.
Deposit date:2005-07-25
Release date:2006-01-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Structural and functional studies suggest a catalytic mechanism for the phosphotransacetylase from Methanosarcina thermophila.
J.Bacteriol., 188, 2006
3SV5
DownloadVisualize
BU of 3sv5 by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: iodide complex
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Green fluorescent protein, ...
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-12
Release date:2012-07-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation.
J.Neurosci., 33, 2013
1MVG
DownloadVisualize
BU of 1mvg by Molmil
NMR solution structure of chicken Liver basic Fatty Acid Binding Protein (Lb-FABP)
Descriptor: Liver basic Fatty Acid Binding Protein
Authors:Vasile, F, Ragona, L, Catalano, M, Zetta, L, Perduca, M, Monaco, H, Molinari, H.
Deposit date:2002-09-25
Release date:2003-03-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of chicken Liver basic type Fatty Acid Binding Protein
J.BIOMOL.NMR, 25, 2003

227111

数据于2024-11-06公开中

PDB statisticsPDBj update infoContact PDBjnumon