1VB9
| Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product | Descriptor: | CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-[alpha-D-glucopyranose-(1-6)]alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-amylase II | Authors: | Mizuno, M, Tonozuka, T, Uechi, A, Ohtaki, A, Ichikawa, K, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2004-02-25 | Release date: | 2005-03-08 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product EUR.J.BIOCHEM., 271, 2004
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1ULV
| Crystal Structure of Glucodextranase Complexed with Acarbose | Descriptor: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, CALCIUM ION, glucodextranase | Authors: | Mizuno, M, Tonozuka, T, Suzuki, S, Uotsu-Tomita, R, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2003-09-16 | Release date: | 2003-12-09 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.42 Å) | Cite: | Structural insights into substrate specificity and function of glucodextranase J.Biol.Chem., 279, 2004
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1SOU
| NMR structure of Aquifex aeolicus 5,10-methenyltetrahydrofolate synthetase: Northeast Structural Genomics Consortium Target QR46 | Descriptor: | 5,10-methenyltetrahydrofolate synthetase | Authors: | Cort, J.R, Chiang, Y, Acton, T, Wu, M, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2004-03-15 | Release date: | 2004-06-22 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | NMR structure of Aquifex aeolicus 5,10-methenyltetrahydrofolate synthetase: Northeast Structural Genomics Consortium Target QR46 To be Published
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1T08
| Crystal structure of beta-catenin/ICAT helical domain/unphosphorylated APC R3 | Descriptor: | Adenomatous polyposis coli protein, Beta-catenin, Beta-catenin-interacting protein 1 | Authors: | Ha, N.-C, Tonozuka, T, Stamos, J.L, Weis, W.I. | Deposit date: | 2004-04-07 | Release date: | 2004-10-12 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Mechanism of phosphorylation-dependent binding of APC to beta-catenin and its role in beta-catenin degradation Mol.Cell, 15, 2004
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1VFO
| Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/beta-cyclodextrin complex | Descriptor: | CALCIUM ION, Cyclic alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ... | Authors: | Ohtaki, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2004-04-16 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.81 Å) | Cite: | Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM., 279, 2004
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1VFM
| Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/alpha-cyclodextrin complex | Descriptor: | CALCIUM ION, Cyclic beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), ... | Authors: | Ohtaki, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2004-04-16 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM., 279, 2004
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2IVW
| The solution structure of a domain from the Neisseria meningitidis PilP pilot protein. | Descriptor: | PILP PILOT PROTEIN | Authors: | Golovanov, A.P, Balasingham, S, Tzitzilonis, C, Goult, B.T, Lian, L.-Y, Homberset, H, Tonjum, T, Derrick, J.P. | Deposit date: | 2006-06-20 | Release date: | 2007-02-13 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | The solution structure of a domain from the Neisseria meningitidis lipoprotein PilP reveals a new beta-sandwich fold. J. Mol. Biol., 364, 2006
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2BCO
| X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14 | Descriptor: | Succinylglutamate desuccinylase, ZINC ION | Authors: | Kuzin, A.P, Abashidze, M, Forouhar, F, Benach, J, Zhou, W, Acton, T, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2005-10-19 | Release date: | 2005-10-25 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14 To be Published
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3G5V
| Antibodies Specifically Targeting a Locally Misfolded Region of Tumor Associated EGFR | Descriptor: | 806 light chain, 808 heavy chain, ACETATE ION, ... | Authors: | Garrett, T.P.J, Burgess, A.W, Huyton, T, Xu, Y. | Deposit date: | 2009-02-05 | Release date: | 2010-02-09 | Last modified: | 2011-10-12 | Method: | X-RAY DIFFRACTION (2.001 Å) | Cite: | Antibodies specifically targeting a locally misfolded region of tumor associated EGFR Proc.Natl.Acad.Sci.USA, 106, 2009
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2F6K
| Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24 | Descriptor: | MANGANESE (II) ION, metal-dependent hydrolase | Authors: | Das, K, Xiao, R, Acton, T, Ma, L, Arnold, E, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2005-11-29 | Release date: | 2006-01-10 | Last modified: | 2017-10-18 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of ACMDS from Lactobacillus plantarum To be Published
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2D0H
| Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2D0F
| Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2BN8
| Solution Structure and interactions of the E .coli Cell Division Activator Protein CedA | Descriptor: | CELL DIVISION ACTIVATOR CEDA | Authors: | Chen, H.A, Simpson, P, Huyton, T, Roper, D, Matthews, S. | Deposit date: | 2005-03-22 | Release date: | 2006-12-21 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Solution Structure and Interactions of the Escherichia Coli Cell Division Activator Protein Ceda. Biochemistry, 44, 2005
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2D2O
| Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft | Descriptor: | CALCIUM ION, Neopullulanase 2, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Ohtaki, A, Mizuno, M, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-09-13 | Release date: | 2006-08-29 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft Carbohydr.Res., 341, 2006
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2B8H
| A/NWS/whale/Maine/1/84 (H1N9) reassortant influenza virus neuraminidase | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... | Authors: | Smith, B.J, Platis, D, Cox, M.M.J, Huyton, T, Joosten, R.P, McKimm-Breschkin, J.L, Zhang, J.-G, Luo, C.S, Lou, M.-Z, Garrett, T.P.J, Labrou, N.E. | Deposit date: | 2005-10-07 | Release date: | 2006-09-05 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding. Acta Crystallogr.,Sect.D, 62, 2006
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2D0G
| Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2EW0
| X-ray Crystal Structure of Protein Q6FF54 from Acinetobacter sp. ADP1. Northeast Structural Genomics Consortium Target AsR1. | Descriptor: | SULFATE ION, hypothetical protein ACIAD0353 | Authors: | Kuzin, A.P, Abashidze, M, Vorobiev, S.M, Forouhar, F, Acton, T, Xiao, R, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2005-11-01 | Release date: | 2005-12-06 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Novel x-ray structure of hypothetical protein Q6FF54 at the resolution 1.4 A. Northeast Structural Genomics target AsR1. TO BE PUBLISHED
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1WZK
| Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt D465N | Descriptor: | Alpha-amylase II, CALCIUM ION | Authors: | Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2005-03-06 | Release date: | 2005-03-22 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published
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1IZJ
| Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme f313a | Descriptor: | CALCIUM ION, amylase | Authors: | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2002-10-03 | Release date: | 2003-07-29 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1WZL
| Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469L | Descriptor: | Alpha-amylase II, CALCIUM ION | Authors: | Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2005-03-06 | Release date: | 2005-03-22 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published
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1IZK
| Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme w398v | Descriptor: | CALCIUM ION, amylase | Authors: | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2002-10-03 | Release date: | 2003-07-29 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1WMR
| Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase | Authors: | Mizuno, M, Tonozuka, T, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2004-07-15 | Release date: | 2005-07-19 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49 J.Mol.Biol., 376, 2008
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1WZM
| Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469K | Descriptor: | Alpha-amylase II, CALCIUM ION | Authors: | Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2005-03-06 | Release date: | 2005-03-22 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published
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1X0C
| Improved Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase | Authors: | Mizuno, M, Tonozuka, T, Yamamura, A, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2005-03-17 | Release date: | 2006-06-13 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49 J.Mol.Biol., 376, 2008
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1JI1
| Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 | Descriptor: | ALPHA-AMYLASE I, CALCIUM ION | Authors: | Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y. | Deposit date: | 2001-06-28 | Release date: | 2002-06-05 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol., 318, 2002
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