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8J6V
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BU of 8j6v by Molmil
Structure of yeast Arginyl-tRNA-protein transferase 1
Descriptor: arginyltransferase
Authors:Yashiro, Y, Tomita, K.
Deposit date:2023-04-26
Release date:2023-06-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of Arginyl-tRNA-protein transferase 1
To Be Published
6AJN
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BU of 6ajn by Molmil
Crystal structure of AtaTR bound with AcCoA
Descriptor: ACETYL COENZYME *A, DUF1778 domain-containing protein, N-acetyltransferase
Authors:Yashiro, Y, Yamashita, S, Tomita, K.
Deposit date:2018-08-28
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.302 Å)
Cite:Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
6AJM
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BU of 6ajm by Molmil
Crystal structure of apo AtaTR
Descriptor: DUF1778 domain-containing protein, N-acetyltransferase, TRIETHYLENE GLYCOL
Authors:Yashiro, Y, Yamashita, S, Tomita, K.
Deposit date:2018-08-28
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
7CHD
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BU of 7chd by Molmil
AtaT complexed with acetyl-methionyl-tRNAfMet
Descriptor: N-acetyltransferase domain-containing protein, RNA (77-MER)
Authors:Yashiro, Y, Tomita, K.
Deposit date:2020-07-05
Release date:2020-11-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.804 Å)
Cite:Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli.
Nat Commun, 11, 2020
7F36
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BU of 7f36 by Molmil
TacT complexed with acetyl-glycyl-tRNAGly
Descriptor: ACETYLAMINO-ACETIC ACID, CALCIUM ION, N-acetyltransferase domain-containing protein, ...
Authors:Yashiro, Y, Tomita, K.
Deposit date:2021-06-15
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.098 Å)
Cite:Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium
Cell Rep, 37, 2021
7F37
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BU of 7f37 by Molmil
Crystal structure of AtaT2-AtaR2 complex
Descriptor: DUF1778 domain-containing protein, GNAT family N-acetyltransferase
Authors:Yashiro, Y, Tomita, K.
Deposit date:2021-06-15
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.896 Å)
Cite:Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium
Cell Rep, 37, 2021
7BYY
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BU of 7byy by Molmil
Crystal structure of bacterial toxin
Descriptor: Acetyltransferase
Authors:Zhang, C, Yashiro, Y, Tomita, K.
Deposit date:2020-04-25
Release date:2020-06-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.799 Å)
Cite:Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs.
Nucleic Acids Res., 48, 2020
8XHR
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BU of 8xhr by Molmil
Crystal structure of Mycobacterium tuberculosis MenT3 bound with CTP
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, Nucleotidyl transferase AbiEii/AbiGii toxin family protein
Authors:Liu, J, Yashiro, Y, Tomita, K.
Deposit date:2023-12-18
Release date:2024-02-28
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate specificity of Mycobacterium tuberculosis tRNA terminal nucleotidyltransferase toxin MenT3.
Nucleic Acids Res., 52, 2024
7VMC
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BU of 7vmc by Molmil
Crystal structure of EF-Tu/CdiA/CdiI
Descriptor: Contact-dependent inhibitor I, Elongation factor Tu, tRNA nuclease CdiA
Authors:Wang, J, Yashiro, Y, Tomita, K.
Deposit date:2021-10-08
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.413 Å)
Cite:Mechanistic insights into tRNA cleavage by a contact-dependent growth inhibitor protein and translation factors.
Nucleic Acids Res., 50, 2022
8GU3
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BU of 8gu3 by Molmil
Crystal structure of Caenorhabditis elegans METT-10 methyltransferase domain
Descriptor: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
Authors:Ju, J, Tomita, K.
Deposit date:2022-09-09
Release date:2023-02-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structure of the Caenorhabditis elegans m6A methyltransferase METT10 that regulates SAM homeostasis.
Nucleic Acids Res., 51, 2023
6KRO
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BU of 6kro by Molmil
Tankyrase-2 in complex with RK-582
Descriptor: 6-[(2S,6R)-2,6-dimethylmorpholin-4-yl]-4-fluoranyl-1-methyl-1'-(8-methyl-4-oxidanylidene-3,5,6,7-tetrahydropyrido[2,3-d]pyrimidin-2-yl)spiro[indole-3,4'-piperidine]-2-one, GLYCEROL, PHOSPHATE ION, ...
Authors:Niwa, H, Shirai, F, Sato, S, Tsumura, T, Okue, M, Shirouzu, M, Seimiya, H, Umehara, T.
Deposit date:2019-08-22
Release date:2020-04-01
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Design and Discovery of an Orally Efficacious Spiroindolinone-Based Tankyrase Inhibitor for the Treatment of Colon Cancer.
J.Med.Chem., 63, 2020
5ZQQ
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BU of 5zqq by Molmil
Tankyrase-2 in complex with compound 52
Descriptor: 1-methyl-1'-(4-oxo-3,4,5,6,7,8-hexahydroquinazolin-2-yl)spiro[indole-3,4'-piperidin]-2(1H)-one, GLYCEROL, PHOSPHATE ION, ...
Authors:Niwa, H, Shirai, F, Sato, S, Yoshimoto, N, Tsumura, T, Okue, M, Shirouzu, M, Seimiya, H, Umehara, T.
Deposit date:2018-04-19
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Discovery of Novel Spiroindoline Derivatives as Selective Tankyrase Inhibitors.
J. Med. Chem., 62, 2019
5ZQO
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BU of 5zqo by Molmil
Tankyrase-2 in complex with compound 1a
Descriptor: 2-[4-(2-methoxyphenyl)piperazin-1-yl]-5,6,7,8-tetrahydroquinazolin-4(3H)-one, GLYCEROL, SULFATE ION, ...
Authors:Niwa, H, Shirai, F, Sato, S, Yoshimoto, N, Tsumura, T, Okue, M, Shirouzu, M, Seimiya, H, Umehara, T.
Deposit date:2018-04-19
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Discovery of Novel Spiroindoline Derivatives as Selective Tankyrase Inhibitors.
J. Med. Chem., 62, 2019
5ZQP
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BU of 5zqp by Molmil
Tankyrase-2 in complex with compound 12
Descriptor: 1'-(4-oxo-3,4,5,6,7,8-hexahydroquinazolin-2-yl)-2H-spiro[1-benzofuran-3,4'-piperidin]-2-one, GLYCEROL, PHOSPHATE ION, ...
Authors:Niwa, H, Shirai, F, Sato, S, Yoshimoto, N, Tsumura, T, Okue, M, Shirouzu, M, Seimiya, H, Umehara, T.
Deposit date:2018-04-19
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Discovery of Novel Spiroindoline Derivatives as Selective Tankyrase Inhibitors.
J. Med. Chem., 62, 2019
5ZQR
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BU of 5zqr by Molmil
Tankyrase-2 in complex with compound 40c
Descriptor: 2-[4,6-difluoro-1-(2-hydroxyethyl)-1,2-dihydro-1'H-spiro[indole-3,4'-piperidin]-1'-yl]-5,6,7,8-tetrahydroquinazolin-4(3H)-one, GLYCEROL, PHOSPHATE ION, ...
Authors:Niwa, H, Shirai, F, Sato, S, Yoshimoto, N, Tsumura, T, Okue, M, Shirouzu, M, Seimiya, H, Umehara, T.
Deposit date:2018-04-19
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Discovery of Novel Spiroindoline Derivatives as Selective Tankyrase Inhibitors.
J. Med. Chem., 62, 2019
6A84
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BU of 6a84 by Molmil
Tankyrase-2 in complex with compound 15d
Descriptor: 2-(4-chloro-1,2-dihydro-1'H-spiro[indole-3,4'-piperidin]-1'-yl)-5,6,7,8-tetrahydroquinazolin-4(3H)-one, GLYCEROL, PHOSPHATE ION, ...
Authors:Niwa, H, Shirai, F, Sato, S, Yoshimoto, N, Tsumura, T, Okue, M, Shirouzu, M, Seimiya, H, Umehara, T.
Deposit date:2018-07-06
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Discovery of Novel Spiroindoline Derivatives as Selective Tankyrase Inhibitors.
J. Med. Chem., 62, 2019

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