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4RCR
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BU of 4rcr by Molmil
STRUCTURE OF THE REACTION CENTER FROM RHODOBACTER SPHAEROIDES R-26 AND 2.4.1: PROTEIN-COFACTOR (BACTERIOCHLOROPHYLL, BACTERIOPHEOPHYTIN, AND CAROTENOID) INTERACTIONS
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ...
Authors:Komiya, H, Yeates, T.O, Chirino, A.J, Rees, D.C, Allen, J.P, Feher, G.
Deposit date:1991-09-09
Release date:1993-10-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the reaction center from Rhodobacter sphaeroides R-26 and 2.4.1: protein-cofactor (bacteriochlorophyll, bacteriopheophytin, and carotenoid) interactions.
Proc.Natl.Acad.Sci.USA, 85, 1988
3BN4
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BU of 3bn4 by Molmil
Carboxysome Subunit, CcmK1
Descriptor: Carbon dioxide-concentrating mechanism protein ccmK homolog 1, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2007-12-13
Release date:2008-03-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Atomic-level models of the bacterial carboxysome shell.
Science, 319, 2008
4DCL
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BU of 4dcl by Molmil
Computationally Designed Self-assembling tetrahedron protein, T308, Crystallized in space group F23
Descriptor: Putative acetyltransferase SACOL2570
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-17
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
2A1B
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BU of 2a1b by Molmil
Carboxysome shell protein ccmK2
Descriptor: Carbon dioxide concentrating mechanism protein ccmK homolog 2
Authors:Kerfeld, C.A, Sawaya, M.R, Tanaka, S, Nguyen, C.V, Phillips, M, Beeby, M, Yeates, T.O.
Deposit date:2005-06-20
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Protein structures forming the shell of primitive bacterial organelles
Science, 309, 2005
5UI2
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BU of 5ui2 by Molmil
CRYSTAL STRUCTURE OF ORANGE CAROTENOID PROTEIN
Descriptor: (3'R)-3'-hydroxy-beta,beta-caroten-4-one, CHLORIDE ION, Orange carotenoid-binding protein, ...
Authors:KERFELD, C.A, SAWAYA, M.R, VISHNU, B, KROGMANN, D, YEATES, T.O.
Deposit date:2017-01-12
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of a cyanobacterial water-soluble carotenoid binding protein.
Structure, 11, 2003
2Z9H
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BU of 2z9h by Molmil
Ethanolamine utilization protein, EutN
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CHLORIDE ION, Ethanolamine utilization protein eutN
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2007-09-20
Release date:2007-10-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:The crystal structure of ethanolamine utilization protein EutN from E. coli
To be Published
2PLT
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BU of 2plt by Molmil
STRUCTURE DETERMINATION OF PLASTOCYANIN FROM A CRYSTAL SPECIMEN WITH HEMIHEDRAL TWINNING FRACTION OF ONE-HALF
Descriptor: CALCIUM ION, COPPER (II) ION, PLASTOCYANIN
Authors:Redinbo, M.R, Merchant, S, Yeates, T.O.
Deposit date:1993-05-06
Release date:1993-10-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The 1.5-A crystal structure of plastocyanin from the green alga Chlamydomonas reinhardtii.
Biochemistry, 32, 1993
1YAC
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BU of 1yac by Molmil
THE 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE YCAC GENE PRODUCT FROM ESCHERICHIA COLI REVEALS AN OCTAMERIC HYDROLASE OF UNKNOWN SPECIFICITY
Descriptor: YCAC GENE PRODUCT
Authors:Colovos, C, Cascio, D, Yeates, T.O.
Deposit date:1998-07-29
Release date:1999-02-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.8 A crystal structure of the ycaC gene product from Escherichia coli reveals an octameric hydrolase of unknown specificity.
Structure, 6, 1998
1KIB
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BU of 1kib by Molmil
cytochrome c6 from Arthrospira maxima: an assembly of 24 subunits in the form of an oblate shell
Descriptor: HEME C, cytochrome c6
Authors:Kerfeld, C.A, Sawaya, M.R, Krogmann, D, Yeates, T.O.
Deposit date:2001-12-03
Release date:2002-07-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of cytochrome c6 from Arthrospira maxima: an assembly of 24 subunits in a nearly symmetric shell.
Acta Crystallogr.,Sect.D, 58, 2002
8UJA
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BU of 8uja by Molmil
T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks
Descriptor: T33-fn10: engineered DrsE like sulfur reductase, T33-fn10: engineered enoyl-CoA hydratase/isomerase
Authors:Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-11
Release date:2024-03-06
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (6 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 32, 2024
6C9I
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BU of 6c9i by Molmil
Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins - Scaffold
Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B
Authors:Gonen, S, Liu, Y, Yeates, T.O, Gonen, T.
Deposit date:2018-01-26
Release date:2018-03-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4D9J
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BU of 4d9j by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains
Descriptor: Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1
Authors:Lai, Y.-T, Cascio, D, Yeates, T.O.
Deposit date:2012-01-11
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.92 Å)
Cite:Structure of a 16-nm cage designed by using protein oligomers.
Science, 336, 2012
4DDF
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BU of 4ddf by Molmil
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4
Descriptor: CHLORIDE ION, Propanediol utilization polyhedral body protein PduT, SULFATE ION
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-18
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
6NHT
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BU of 6nht by Molmil
Single particle reconstruction of the symmetric core an engineered protein scaffold
Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B
Authors:Liu, Y, Huynh, D, Yeates, T.O.
Deposit date:2018-12-23
Release date:2019-05-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold.
Nat Commun, 10, 2019
6NHV
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BU of 6nhv by Molmil
Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold
Descriptor: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP
Authors:Liu, Y, Huynh, D, Yeates, T.O.
Deposit date:2018-12-24
Release date:2019-05-08
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold.
Nat Commun, 10, 2019
2B5O
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BU of 2b5o by Molmil
ferredoxin-NADP reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, SULFATE ION
Authors:Sawaya, M.R, Kerfeld, C.A, Gomez-Lojero, C, Krogmann, D, Bryant, D.A, Yeates, T.O.
Deposit date:2005-09-29
Release date:2005-10-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Crystal Structure of Ferredoxin-NADP reductase from Synechococcus sp. (PCC 7002)
To be Published
2A10
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BU of 2a10 by Molmil
carboxysome shell protein ccmK4
Descriptor: Carbon dioxide concentrating mechanism protein ccmK homolog 4
Authors:Kerfeld, C.A, Sawaya, M.R, Tanaka, S, Nguyen, C.V, Phillips, M, Beeby, M, Yeates, T.O.
Deposit date:2005-06-17
Release date:2005-08-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Protein structures forming the shell of primitive bacterial organelles
Science, 309, 2005
2A5X
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BU of 2a5x by Molmil
Crystal Structure of a Cross-linked Actin Dimer
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Actin, alpha skeletal muscle, ...
Authors:Kudryashov, D.S, Sawaya, M.R, Adisetiyo, H, Norcross, T, Hegyi, G, Reisler, E, Yeates, T.O.
Deposit date:2005-07-01
Release date:2005-08-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin
Proc.Natl.Acad.Sci.Usa, 102, 2005
2A18
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BU of 2a18 by Molmil
carboxysome shell protein ccmK4, crystal form 2
Descriptor: AMMONIUM ION, Carbon dioxide concentrating mechanism protein ccmK homolog 4
Authors:Kerfeld, C.A, Sawaya, M.R, Tanaka, S, Nguyen, C.V, Phillips, M, Beeby, M, Yeates, T.O.
Deposit date:2005-06-18
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Protein structures forming the shell of primitive bacterial organelles
Science, 309, 2005
6ARC
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BU of 6arc by Molmil
Monoclinic EutL - structure determined from merged "Group 1" data
Descriptor: CHLORIDE ION, Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Yeates, T.O.
Deposit date:2017-08-22
Release date:2017-10-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.
Acta Crystallogr D Struct Biol, 74, 2018
6ARD
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BU of 6ard by Molmil
Monoclinic EutL - structure determined from merged "Group 2" data
Descriptor: Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Yeates, T.O.
Deposit date:2017-08-22
Release date:2017-10-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.
Acta Crystallogr D Struct Biol, 74, 2018
6C9K
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BU of 6c9k by Molmil
Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins
Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B
Authors:Gonen, S, Liu, Y, Yeates, T.O, Gonen, T.
Deposit date:2018-01-26
Release date:2018-03-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4EGG
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BU of 4egg by Molmil
Computationally Designed Self-assembling tetrahedron protein, T310
Descriptor: GLYCEROL, Putative acetyltransferase SACOL2570
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-03-30
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4FDZ
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BU of 4fdz by Molmil
EutL from Clostridium perfringens, Crystallized Under Reducing Conditions
Descriptor: Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Crowley, C.S, Kopstein, J.S, Yeates, T.O.
Deposit date:2012-05-29
Release date:2013-05-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015
8T0B
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BU of 8t0b by Molmil
Novel Domain of Unknown Function Solved with AlphaFold
Descriptor: DUF1842 domain-containing protein
Authors:Miller, J.E, Cascio, D, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-05-31
Release date:2024-01-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography.
Acta Crystallogr D Struct Biol, 80, 2024

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