Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2YPF
DownloadVisualize
BU of 2ypf by Molmil
Structure of the AvrBs3-DNA complex provides new insights into the initial thymine-recognition mechanism
Descriptor: 5'-D(*TP*AP*GP*AP*GP*GP*GP*TP*TP*AP*GP*GP*TP*TP *TP*AP*TP*AP*TP*AP*AP)-3', 5'-D(*TP*TP*TP*AP*TP*AP*TP*AP*AP*AP*CP*CP*TP*AP *AP*CP*CP*CP*TP*CP*TP*AP)-3', AVRBS3
Authors:Stella, S, Molina, R, Yefimenko, I, Prieto, J, Silva, G.H, Bertonati, C, Juillerat, A, Duchateau, P, Montoya, G.
Deposit date:2012-10-30
Release date:2013-08-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of the Avrbs3-DNA Complex Provides New Insights Into the Initial Thymine-Recognition Mechanism
Acta Crystallogr.,Sect.D, 69, 2013
4CJ9
DownloadVisualize
BU of 4cj9 by Molmil
BurrH DNA-binding protein from Burkholderia rhizoxinica in its apo form
Descriptor: BURRH, SELENIUM ATOM
Authors:Stella, S, Molina, R, Lopez-Mendez, B, Campos-Olivas, R, Duchateau, P, Montoya, G.
Deposit date:2013-12-19
Release date:2014-07-09
Last modified:2014-07-23
Method:X-RAY DIFFRACTION (2.214 Å)
Cite:Bud, a Helix-Loop-Helix DNA-Binding Domain for Genome Modification
Acta Crystallogr.,Sect.D, 70, 2014
4CJA
DownloadVisualize
BU of 4cja by Molmil
BurrH DNA-binding protein from Burkholderia rhizoxinica in complex with its target DNA
Descriptor: 5'-D(*DTP*AP*TP*AP*AP*CP*GP*TP*AP*TP*TP*TP*GP*CP *TP*TP*CP*TP*CP*TP*TP*AP*AP)-3', 5'-D(*DTP*TP*AP*AP*GP*AP*GP*AP*AP*GP*CP*AP*AP*DP *TP*AP*CP*GP*TP*TP*AP*TP*AP)-3', BURRH
Authors:Stella, S, Molina, R, Lopez-Mendez, B, Campos-Olivas, R, Duchateau, P, Montoya, G.
Deposit date:2013-12-19
Release date:2014-07-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:Bud, a Helix-Loop-Helix DNA-Binding Domain for Genome Modification
Acta Crystallogr.,Sect.D, 70, 2014
3IV5
DownloadVisualize
BU of 3iv5 by Molmil
Crystal structure of Fis bound to 27 bp optimal binding sequence F1
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-08-31
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JR9
DownloadVisualize
BU of 3jr9 by Molmil
Crystal structure of Fis bound to 27 bp optimal binding sequence F2
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRF
DownloadVisualize
BU of 3jrf by Molmil
Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRD
DownloadVisualize
BU of 3jrd by Molmil
Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at center
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRB
DownloadVisualize
BU of 3jrb by Molmil
Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRH
DownloadVisualize
BU of 3jrh by Molmil
Crystal structure of Fis bound to 27 bp non consensus sequence DNA F21
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRA
DownloadVisualize
BU of 3jra by Molmil
Crystal structure of Fis bound to 27bp non consensus sequence DNA F6
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRG
DownloadVisualize
BU of 3jrg by Molmil
Crystal structure of Fis bound to 27 bp non consensus sequence DNA F18
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRC
DownloadVisualize
BU of 3jrc by Molmil
Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at center
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRI
DownloadVisualize
BU of 3jri by Molmil
Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRE
DownloadVisualize
BU of 3jre by Molmil
Crystal structure of Fis bound to 27 bp DNA F26 containing A-tract at center
Descriptor: DNA (27-MER), DNA-binding protein fis
Authors:Stella, S, Cascio, D, Johnson, R.C.
Deposit date:2009-09-08
Release date:2010-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
5MGA
DownloadVisualize
BU of 5mga by Molmil
Structure of the Cpf1 endonuclease R-loop complex after DNA cleavage
Descriptor: CRISPR-associated endonuclease Cpf1, DNA (26-MER), DNA (5'-D(P*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'), ...
Authors:Montoya, G, Stella, S.
Deposit date:2016-11-21
Release date:2017-06-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Cpf1 endonuclease R-loop complex after target DNA cleavage.
Nature, 546, 2017
6GTE
DownloadVisualize
BU of 6gte by Molmil
Transient state structure of CRISPR-Cpf1 (Cas12a) I3 conformation
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*TP*AP*AP*CP*AP*AP*GP*CP*TP*CP*G)-3'), DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*G)-3'), ...
Authors:Montoya, G, Mesa, P, Stella, S.
Deposit date:2018-06-18
Release date:2018-12-19
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity.
Cell, 175, 2018
6GTG
DownloadVisualize
BU of 6gtg by Molmil
Transition state structure of Cpf1(Cas12a) I4 conformation
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (32-MER), DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'), ...
Authors:Mesa, P, Montoya, G, Stella, S.
Deposit date:2018-06-18
Release date:2018-12-19
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity.
Cell, 175, 2018
6GTF
DownloadVisualize
BU of 6gtf by Molmil
Transient state structure of CRISPR-Cpf1 (Cas12a) I5 conformation
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*TP*AP*AP*CP*AP*AP*GP*CP*TP*CP*G)-3'), DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*A)-3'), ...
Authors:Montoya, G, Mesa, P, Stella, S.
Deposit date:2018-06-18
Release date:2018-12-19
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity.
Cell, 175, 2018
5E3M
DownloadVisualize
BU of 5e3m by Molmil
Crystal structure of Fis bound to 27bp DNA F35 (AAATTAGTTTGAATCTCGAGCTAATTT)
Descriptor: DNA (27-MER), DNA-binding protein Fis
Authors:Stella, S, Hancock, S.P, Cascio, D, Johnson, R.C.
Deposit date:2015-10-03
Release date:2016-03-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.886 Å)
Cite:DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis.
Plos One, 11, 2016
6R9R
DownloadVisualize
BU of 6r9r by Molmil
Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2
Descriptor: CRISPR-associated (Cas) DxTHG family, circular RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Molina, R, Montoya, G, Sofos, N, Stella, S.
Deposit date:2019-04-03
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas.
Nat Commun, 10, 2019
6R7B
DownloadVisualize
BU of 6r7b by Molmil
Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1
Descriptor: CRISPR-associated (Cas) DxTHG family, RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Molina, R, Montoya, G, Sofos, N, Stella, S.
Deposit date:2019-03-28
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structure of Csx1-cOA4complex reveals the basis of RNA decay in Type III-B CRISPR-Cas.
Nat Commun, 10, 2019
4UT0
DownloadVisualize
BU of 4ut0 by Molmil
THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MN (STATE 7)
Descriptor: 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*CP)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3', ...
Authors:Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G.
Deposit date:2014-07-17
Release date:2014-12-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol., 22, 2015
7Z56
DownloadVisualize
BU of 7z56 by Molmil
Crystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in its apo form
Descriptor: CRISPR-associated protein
Authors:Molina, R, Martin-Garcia, R, Lopez-Mendez, B, Jensen, A.L.G, Marchena-Hurtado, J, Stella, S, Montoya, G.
Deposit date:2022-03-08
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Molecular basis of cyclic tetra-oligoadenylate processing by small standalone CRISPR-Cas ring nucleases.
Nucleic Acids Res., 50, 2022
7Z55
DownloadVisualize
BU of 7z55 by Molmil
Crystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrate
Descriptor: ACETATE ION, CRISPR-associated protein, Cyclic RNA cA4, ...
Authors:Molina, R, Martin-Garcia, R, Lopez-Mendez, B, Jensen, A.L.G, Marchena-Hurtado, J, Stella, S, Montoya, G.
Deposit date:2022-03-08
Release date:2022-11-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.664 Å)
Cite:Molecular basis of cyclic tetra-oligoadenylate processing by small standalone CRISPR-Cas ring nucleases.
Nucleic Acids Res., 50, 2022
7ODF
DownloadVisualize
BU of 7odf by Molmil
Structure of the mini-RNA-guided endonuclease CRISPR-Cas_phi3
Descriptor: Cas_phi3, DNA (5'-D(P*GP*G)-3'), DNA (5'-D(P*GP*TP*AP*AP*TP*TP*CP*AP*G)-3'), ...
Authors:Carabias del Rey, A, Fugilsang, A, Temperini, P, Pape, T, Sofos, N, Stella, S, Erledsson, S, Montoya, G.
Deposit date:2021-04-29
Release date:2021-07-21
Last modified:2021-08-11
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of the mini-RNA-guided endonuclease CRISPR-Cas12j3.
Nat Commun, 12, 2021

 

123>

221051

건을2024-06-12부터공개중

PDB statisticsPDBj update infoContact PDBjnumon