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1X0L
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BU of 1x0l by Molmil
Crystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus
Descriptor: Homoisocitrate dehydrogenase
Authors:Miyazaki, J, Asada, K, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2005-03-24
Release date:2005-10-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of Tetrameric Homoisocitrate Dehydrogenase from an Extreme Thermophile, Thermus thermophilus: Involvement of Hydrophobic Dimer-Dimer Interaction in Extremely High Thermotolerance
J.Bacteriol., 187, 2005
1VFF
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beta-glycosidase from Pyrococcus horikoshii
Descriptor: beta-glucosidase
Authors:Akiba, T, Nishio, M, Matsui, I, Harata, K.
Deposit date:2004-04-12
Release date:2005-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure of a membrane-bound beta-glycosidase from the hyperthermophilic archaeon Pyrococcus horikoshii
Proteins, 57, 2004
3SO2
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BU of 3so2 by Molmil
Chlorella dUTPase
Descriptor: Putative uncharacterized protein
Authors:Badalucco, L, Poudel, I, Natarajan, c, Yamanishi, M, Moriyama, H.
Deposit date:2011-06-29
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6428 Å)
Cite:Crystallization of Chlorella deoxyuridine triphosphatase.
Acta Crystallogr.,Sect.F, 67, 2011
3VV5
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BU of 3vv5 by Molmil
Crystal structure of TTC0807 complexed with (S)-2-aminoethyl-L-cysteine (AEC)
Descriptor: Amino acid ABC transporter, binding protein, L-THIALYSINE, ...
Authors:Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
Deposit date:2012-07-16
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
3VVD
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BU of 3vvd by Molmil
Crystal structure of TTC0807 complexed with Ornithine
Descriptor: Amino acid ABC transporter, binding protein, L-ornithine
Authors:Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
Deposit date:2012-07-21
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
3VVE
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Crystal structure of TTC0807 complexed with Lysine
Descriptor: Amino acid ABC transporter, binding protein, LYSINE, ...
Authors:Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
Deposit date:2012-07-21
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
3VVF
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Crystal structure of TTC0807 complexed with Arginine
Descriptor: ARGININE, Amino acid ABC transporter, binding protein, ...
Authors:Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
Deposit date:2012-07-21
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
1ZRN
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BU of 1zrn by Molmil
INTERMEDIATE STRUCTURE OF L-2-HALOACID DEHALOGENASE WITH MONOCHLOROACETATE
Descriptor: ACETIC ACID, L-2-HALOACID DEHALOGENASE
Authors:Li, Y.-F, Hata, Y, Fujii, T, Hisano, T, Nishihara, M, Kurihara, T, Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
1ZRM
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CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE OF L-2-HALOACID DEHALOGENASE WITH 2-CHLORO-N-BUTYRATE
Descriptor: L-2-HALOACID DEHALOGENASE, butanoic acid
Authors:Li, Y.-F, Hata, Y, Fujii, T, Hisano, T, Nishihara, M, Kurihara, T, Esaki, N.
Deposit date:1998-03-03
Release date:1999-03-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
2DT9
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Crystal structure of the regulatory subunit of aspartate kinase from Thermus flavus
Descriptor: ACETATE ION, Aspartokinase, THREONINE
Authors:Yoshida, A, Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2006-07-11
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of the regulatory subunit of Thr-sensitive aspartate kinase from Thermus thermophilus
Febs J., 276, 2009
2CVQ
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Crystal structure of NAD(H)-dependent malate dehydrogenase complexed with NADPH
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2005-06-13
Release date:2005-08-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of NAD-dependent malate dehydrogenase complexed with NADP(H)
Biochem.Biophys.Res.Commun., 334, 2005
2CZL
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Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8 (Cys11 modified with beta-mercaptoethanol)
Descriptor: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, L(+)-TARTARIC ACID, POTASSIUM ION, ...
Authors:Arai, R, Nishino, A, Nagano, K, Kamo-Uchikubo, T, Nishimoto, M, Toyama, M, Terada, T, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
J.Struct.Biol., 168, 2009
2YR2
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BU of 2yr2 by Molmil
Crystal Structure of the Hypothetical regulator from Sulfolobus tokodaii
Descriptor: 146aa long hypothetical transcriptional regulator, ZINC ION
Authors:Kumarevel, T.S, Tanaka, T, Nishio, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-02
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal Structure of the Hypothetical regulator from Sulfolobus tokodaii
To be Published
2Z9Z
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BU of 2z9z by Molmil
Crystal structure of CERT START domain(N504A mutant), in complex with C10-diacylglycerol
Descriptor: (2S)-3-hydroxypropane-1,2-diyl didecanoate, Lipid-transfer protein CERT
Authors:Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
Deposit date:2007-09-26
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZTJ
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Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, COPPER (II) ION, Homocitrate synthase
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2008-10-06
Release date:2009-10-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZYF
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Crystal structure of homocitrate synthase from Thermus thermophilus complexed with magnesuim ion and alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, Homocitrate synthase, MAGNESIUM ION
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2009-01-20
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from thermus thermophilus
J.Biol.Chem., 2009
2ZYJ
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Crystal structure of LysN, alpha-aminoadipate aminotransferase (complexed with N-(5'-phosphopyridoxyl)-L-glutamate), from Thermus thermophilus HB27
Descriptor: Alpha-aminodipate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
Authors:Ouchi, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2009-01-26
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Dual roles of a conserved pair, Arg23 and Ser20, in recognition of multiple substrates in alpha-aminoadipate aminotransferase from Thermus thermophilus.
Biochem.Biophys.Res.Commun., 388, 2009
3A9I
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BU of 3a9i by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with Lys
Descriptor: COBALT (II) ION, Homocitrate synthase, LYSINE
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2009-10-28
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
3AOG
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Crystal structure of glutamate dehydrogenase (GdhB) from Thermus thermophilus (Glu bound form)
Descriptor: AMMONIUM ION, GLUTAMIC ACID, Glutamate dehydrogenase, ...
Authors:Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2010-09-28
Release date:2011-09-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An unique allosteric regulation revealed by crystal structure of hetero-hexameric glutamate dehydrogenase from Thermus thermophilus
To be Published
3AH3
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Crystal structure of LR5-1, 3-isopropylmalate dehydrogenase created by directed evolution
Descriptor: 1,2-ETHANEDIOL, Homoisocitrate dehydrogenase, SULFATE ION
Authors:Tomita, T, Suzuki, Y, Kuzuyama, T, Nishiyama, M.
Deposit date:2010-04-13
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Enhancement of the latent 3-isopropylmalate dehydrogenase activity of promiscuous homoisocitrate dehydrogenase by directed evolution
Biochem.J., 431, 2010
2ZTK
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BU of 2ztk by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with homocitrate
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, COPPER (II) ION, Homocitrate synthase
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2008-10-06
Release date:2009-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2Z9Y
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BU of 2z9y by Molmil
Crystal structure of CERT START domain in complex with C10-diacylglycerol
Descriptor: (2S)-3-hydroxypropane-1,2-diyl didecanoate, Lipid-transfer protein CERT
Authors:Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
Deposit date:2007-09-26
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3AOE
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Crystal structure of hetero-hexameric glutamate dehydrogenase from Thermus thermophilus (Leu bound form)
Descriptor: Glutamate dehydrogenase, LEUCINE
Authors:Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2010-09-27
Release date:2011-09-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:An unique allosteric regulation revealed by hetero-hexameric glutamate dehydrogenase from Thermus thermophilus
To be Published
3AUA
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Crystal structure of the quaternary complex-2 of an isomerase
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[ethanoyl(hydroxy)amino]propylphosphonic acid, CALCIUM ION, ...
Authors:Umeda, T, Tanaka, N, Kusakabe, Y, Nakanishi, M, Kitade, Y, Nakamura, K.T.
Deposit date:2011-02-01
Release date:2011-08-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
Sci Rep, 1, 2011
3AU8
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Crystal structure of the ternary complex of an isomerase
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, MANGANESE (II) ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Umeda, T, Tanaka, N, Kusakabe, Y, Nakanishi, M, Kitade, Y, Nakamura, K.T.
Deposit date:2011-02-01
Release date:2011-08-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum
Sci Rep, 1, 2011

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