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Structure of B10_CYTX binder-complex
Descriptor:	B10_CYTX binder, Cytotoxin 1
Authors:	Bera, A.K, Torres, S.V, Kang, A, Baker, D.
Deposit date:	2024-04-26
Release date:	2024-10-09
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	De novo designed proteins neutralize lethal snake venom toxins To Be Published

8FVT

Multi-state design of two-state switchable hinge proteins
Descriptor:	3hb12
Authors:	Bera, A.K, Broerman, A, Baker, D.
Deposit date:	2023-01-19
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (3.07 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FIH

Multi-state design of two-state switchable hinge proteins
Descriptor:	3hb05, PHOSPHATE ION
Authors:	Bera, A.K, Broerman, A, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FBJ

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_60
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.25 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBO

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_102
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.4 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBI

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_39
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.61 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBK

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_65
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBN

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_73
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.04 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FIN

Multi-state design of two-state switchable hinge proteins
Descriptor:	cs207A
Authors:	Bera, A.K, Leung, P.J.Y, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FIT

Multi-state design of two-state switchable hinge proteins
Descriptor:	cs074A
Authors:	Bera, A.K, Praetorius, F, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8FAR

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1-CC
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-11-28
Release date:	2023-11-01
Last modified:	2024-10-23
Method:	X-RAY DIFFRACTION (3.66 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8FIQ

Multi-state design of two-state switchable hinge proteins
Descriptor:	cs207AB
Authors:	Bera, A.K, Leung, P.J.Y, Baker, D.
Deposit date:	2022-12-16
Release date:	2023-08-16
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.66 Å)
Cite:	Design of stimulus-responsive two-state hinge proteins. Science, 381, 2023

8U1A

De novo Design of Near Infrared Fluorescent Proteins
Descriptor:	Designed Near Infrared Fluorescent Protein MC7BP34
Authors:	Liu, Y, Xu, C, Bera, A.K, Kang, A, Baker, D.
Deposit date:	2023-08-31
Release date:	2024-09-11
Method:	X-RAY DIFFRACTION (3.28 Å)
Cite:	De novo Design of Near Infrared Fluorescent Proteins To Be Published

8EVM

De novo design of chlorophyll special pair containing protein assemblies
Descriptor:	Chlorophyll dimer protein designs, Special Pair 3 (SP3x)
Authors:	Bera, A.K, Ennist, N.M.
Deposit date:	2022-10-20
Release date:	2024-05-15
Last modified:	2024-07-10
Method:	X-RAY DIFFRACTION (3.05 Å)
Cite:	De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 20, 2024

8FJE

The five-repeat design E8
Descriptor:	E8
Authors:	Bera, A.K, An, L, Baker, D.
Deposit date:	2022-12-19
Release date:	2023-09-27
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Hallucination of closed repeat proteins containing central pockets. Nat.Struct.Mol.Biol., 30, 2023

8FJG

The two-repeat design H12
Descriptor:	H12
Authors:	Bera, A.K, An, L, Baker, D.
Deposit date:	2022-12-19
Release date:	2023-09-27
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.13 Å)
Cite:	Hallucination of closed repeat proteins containing central pockets. Nat.Struct.Mol.Biol., 30, 2023

8FJF

The three-repeat design H10
Descriptor:	H10
Authors:	Bera, A.K, An, L, Baker, D.
Deposit date:	2022-12-19
Release date:	2023-09-27
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Hallucination of closed repeat proteins containing central pockets. Nat.Struct.Mol.Biol., 30, 2023

7K3H

Crystal structure of deep network hallucinated protein 0217
Descriptor:	Network hallucinated protein 0217
Authors:	Pellock, S.J, Anishchenko, I, Chidyausiku, T.M, Bera, A.K, DiMaio, F, Baker, D.
Deposit date:	2020-09-11
Release date:	2021-12-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	De novo protein design by deep network hallucination. Nature, 600, 2021

8EK4

De novo designed ice-binding proteins from twist-constrained helices
Descriptor:	Ice-binding protein TIP-99a
Authors:	Bera, A.K, De Haas, R.J.
Deposit date:	2022-09-19
Release date:	2023-07-12
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	De novo designed ice-binding proteins from twist-constrained helices. Proc.Natl.Acad.Sci.USA, 120, 2023

8FG6

Design of amyloidogenic peptide traps
Descriptor:	C104.1, amyloidogenic peptide
Authors:	Sahtoe, D.D, Bera, A.K, Baker, D.
Deposit date:	2022-12-12
Release date:	2024-03-20
Last modified:	2024-08-07
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Design of amyloidogenic peptide traps. Nat.Chem.Biol., 20, 2024

8ERW

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C2HR4_8r
Authors:	Bick, M.J, Parmeggiani, F, Bethel, N.P, Sankaran, B, Baker, D.
Deposit date:	2022-10-12
Release date:	2023-08-23
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.88 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8EOV

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C2HR1_4r, PHOSPHATE ION
Authors:	Bera, A.K, Bethel, N.P.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.59 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8EOX

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C4HR1_4r
Authors:	Bera, A.K, Bethel, N.P.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.3 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GA9

C4HR1_4r: Extendable repeat protein tetramer
Descriptor:	C4HR1_4r
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-22
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.71 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8G8I

C3HR3_9r_shift4: Extendable repeat protein fiber
Descriptor:	C3HR3_9r_shift4
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-17
Release date:	2023-08-30
Last modified:	2023-12-13
Method:	ELECTRON MICROSCOPY (3.92 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

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