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De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester matching geometry of purple bacterial special pair, SP1-ZnPPaM
Descriptor:	1,2-ETHANEDIOL, SP1-ZnPPaM designed chlorophyll dimer protein, SULFATE ION, ...
Authors:	Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
Deposit date:	2022-04-11
Release date:	2023-04-19
Last modified:	2024-06-12
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024

7UNH

De novo designed chlorophyll dimer protein in apo state, SP2
Descriptor:	1,2-ETHANEDIOL, SP2 designed chlorophyll dimer protein
Authors:	Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
Deposit date:	2022-04-11
Release date:	2023-04-19
Last modified:	2024-06-12
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024

7UNI

De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester, SP2-ZnPPaM
Descriptor:	1,2-ETHANEDIOL, PHOSPHATE ION, SP2-ZnPPaM designed chlorophyll dimer protein, ...
Authors:	Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
Deposit date:	2022-04-11
Release date:	2023-04-19
Last modified:	2024-06-12
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024

7UR7

17_bp_sh3, a small beta-barrel de novo designed protein
Descriptor:	17_bp_sh3
Authors:	Bera, A.K, Kim, D, Baker, D.
Deposit date:	2022-04-21
Release date:	2023-03-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.21 Å)
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7UR8

170_h_ob, a small beta-barrel de novo designed protein
Descriptor:	170_h_ob
Authors:	Bera, A.K, Kim, D, Baker, D.
Deposit date:	2022-04-21
Release date:	2023-03-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

8U5A

Improving protein expression, stability, and function with ProteinMPNN
Descriptor:	Designed myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:	Kalvet, I, Bera, A.K, Baker, D.
Deposit date:	2023-09-12
Release date:	2024-01-17
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Improving Protein Expression, Stability, and Function with ProteinMPNN. J.Am.Chem.Soc., 146, 2024

8GA9

C4HR1_4r: Extendable repeat protein tetramer
Descriptor:	C4HR1_4r
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-22
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.71 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8G8I

C3HR3_9r_shift4: Extendable repeat protein fiber
Descriptor:	C3HR3_9r_shift4
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-17
Release date:	2023-08-30
Last modified:	2023-12-13
Method:	ELECTRON MICROSCOPY (3.92 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GAQ

C5HR2_4r: Extendable repeat protein pentamer
Descriptor:	C5HR2_4r
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-23
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.73 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GAA

C6HR1_4r: Extendable repeat protein hexamer
Descriptor:	C6HR1_4r
Authors:	Bethel, N.P, Borst, A.J, Baker, D.
Deposit date:	2023-02-22
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (4.24 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8FG6

Design of amyloidogenic peptide traps
Descriptor:	C104.1, amyloidogenic peptide
Authors:	Sahtoe, D.D, Bera, A.K, Baker, D.
Deposit date:	2022-12-12
Release date:	2024-03-20
Last modified:	2024-08-07
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Design of amyloidogenic peptide traps. Nat.Chem.Biol., 20, 2024

8FAR

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1-CC
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-11-28
Release date:	2023-11-01
Last modified:	2024-10-23
Method:	X-RAY DIFFRACTION (3.66 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CWY

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	T32-15-1, T32-15-2
Authors:	Li, Z, Borst, A.J, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.34 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CWS

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-2 Chain A, F4132-2 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (4.4 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUS

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(NaCl) Chain A, I432-1(NaCl) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2024-11-13
Method:	X-RAY DIFFRACTION (3.98 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUT

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(Imd) Chain A, I432-1(Imd) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2024-10-23
Method:	X-RAY DIFFRACTION (4 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUX

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	R3-1 Chain B
Authors:	Bera, A.K, Natterman, U, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CWZ

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1-X3 Chain A, I432-1-X3 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2024-11-06
Method:	X-RAY DIFFRACTION (5.53 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUU

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1-0 chain A, F4132-1-0 chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.91 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUV

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1 chain A, F4132-1 chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUW

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1-3 Chain A, F4132-1-3 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.55 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8FBO

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_102
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.4 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBJ

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_60
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.25 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBI

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_39
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.61 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

8FBK

Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
Descriptor:	KWOCA_65
Authors:	Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
Deposit date:	2022-11-29
Release date:	2023-03-22
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proc.Natl.Acad.Sci.USA, 120, 2023

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