Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4XHR
DownloadVisualize
BU of 4xhr by Molmil
Structure of a phospholipid trafficking complex, native
分子名称: Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial
著者Yu, F, He, F, Wang, C, Zhang, P.
登録日2015-01-06
公開日2015-07-01
最終更新日2015-08-05
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural basis of intramitochondrial phosphatidic acid transport mediated by Ups1-Mdm35 complex
Embo Rep., 16, 2015
4XIZ
DownloadVisualize
BU of 4xiz by Molmil
Structure of a phospholipid trafficking complex with substrate
分子名称: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, Mitochondrial distribution and morphology protein 35, Protein UPS1, ...
著者Yu, F, He, F, Wang, C, Zhang, P.
登録日2015-01-08
公開日2015-07-01
最終更新日2015-09-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of intramitochondrial phosphatidic acid transport mediated by Ups1-Mdm35 complex
Embo Rep., 16, 2015
3EOP
DownloadVisualize
BU of 3eop by Molmil
Crystal Structure of the DUF55 domain of human thymocyte nuclear protein 1
分子名称: SULFATE ION, Thymocyte nuclear protein 1
著者Yu, F, Song, A, Xu, C, Sun, L, Li, L, Tang, L, Hu, H, He, J.
登録日2008-09-29
公開日2009-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Determining the DUF55-domain structure of human thymocyte nuclear protein 1 from crystals partially twinned by tetartohedry
Acta Crystallogr.,Sect.D, 65, 2009
3B0U
DownloadVisualize
BU of 3b0u by Molmil
tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA fragment
分子名称: FLAVIN MONONUCLEOTIDE, RNA (5'-R(*GP*GP*(H2U)P*A)-3'), tRNA-dihydrouridine synthase
著者Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
登録日2011-06-14
公開日2011-12-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.948 Å)
主引用文献Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
3B0V
DownloadVisualize
BU of 3b0v by Molmil
tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA
分子名称: FLAVIN MONONUCLEOTIDE, tRNA, tRNA-dihydrouridine synthase
著者Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
登録日2011-06-14
公開日2011-12-14
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
3B0P
DownloadVisualize
BU of 3b0p by Molmil
tRNA-dihydrouridine synthase from Thermus thermophilus
分子名称: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase
著者Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
登録日2011-06-12
公開日2011-12-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
5GM2
DownloadVisualize
BU of 5gm2 by Molmil
Crystal structure of methyltransferase TleD complexed with SAH and teleocidin A1
分子名称: (2S,5S)-9-[(3R)-3,7-dimethylocta-1,6-dien-3-yl]-5-(hydroxymethyl)-1-methyl-2-(propan-2-yl)-1,2,4,5,6,8-hexahydro-3H-[1,4]diazonino[7,6,5-cd]indol-3-one, O-methylransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Yu, F, Li, M.J, Xu, C.Y, Zhou, H, Sun, B, Wang, Z.J, Xu, Q, Xie, M.Y, Zuo, G, Huang, P, Wang, Q.S, He, J.H.
登録日2016-07-12
公開日2016-09-28
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure and enantioselectivity of terpene cyclization in SAM-dependent methyltransferase TleD
Biochem.J., 473, 2016
5GM1
DownloadVisualize
BU of 5gm1 by Molmil
Crystal structure of methyltransferase TleD complexed with SAH
分子名称: O-methylransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Yu, F, Li, M.J, Xu, C.Y, Zhou, H, Sun, B, Wang, Z.J, Xu, Q, Xie, M.Y, Zuo, G, Huang, P, Wang, Q.S, He, J.H.
登録日2016-07-12
公開日2016-09-28
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Crystal structure and enantioselectivity of terpene cyclization in SAM-dependent methyltransferase TleD
Biochem.J., 473, 2016
4L36
DownloadVisualize
BU of 4l36 by Molmil
Crystal structure of the cytochrome P450 enzyme TxtE
分子名称: HEME B/C, IMIDAZOLE, Putative P450-like protein
著者Yu, F, Li, M.J, Xu, C.Y, Wang, Z.J, Zhou, H, Yang, M, Chen, Y.X, Tang, L, He, J.H.
登録日2013-06-05
公開日2013-12-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献Structural Insights into the Mechanism for Recognizing Substrate of the Cytochrome P450 Enzyme TxtE.
Plos One, 8, 2013
2REU
DownloadVisualize
BU of 2reu by Molmil
Crystal Structure of the C-terminal of Sau3AI fragment
分子名称: MAGNESIUM ION, Type II restriction enzyme Sau3AI
著者Hu, X, Yu, F, Xu, C, He, J.
登録日2007-09-27
公開日2008-09-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure and function of C-terminal Sau3AI domain
Biochim.Biophys.Acta, 1794, 2009
5X4J
DownloadVisualize
BU of 5x4j by Molmil
The crystal structure of Pyrococcus furiosus RecJ (Zn-soaking)
分子名称: CHLORIDE ION, Uncharacterized protein, ZINC ION
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5X4K
DownloadVisualize
BU of 5x4k by Molmil
The complex crystal structure of Pyrococcus furiosus RecJ and CMP
分子名称: CYTIDINE-5'-MONOPHOSPHATE, Uncharacterized protein, ZINC ION
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.749 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5X4H
DownloadVisualize
BU of 5x4h by Molmil
The crystal structure of Pyrococcus furiosus RecJ (wild-type)
分子名称: MAGNESIUM ION, Uncharacterized protein
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5X4I
DownloadVisualize
BU of 5x4i by Molmil
Pyrococcus furiosus RecJ (D83A, Mn-soaking)
分子名称: CHLORIDE ION, MANGANESE (II) ION, Uncharacterized protein
著者Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
登録日2017-02-13
公開日2018-02-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.092 Å)
主引用文献The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
6KZ8
DownloadVisualize
BU of 6kz8 by Molmil
Crystal structure of plant Phospholipase D alpha complex with phosphatidic acid
分子名称: 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHATE, CALCIUM ION, Phospholipase D alpha 1
著者Li, J.X, Yu, F, Zhang, P.
登録日2019-09-23
公開日2019-11-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.291 Å)
主引用文献Crystal structure of plant PLD alpha 1 reveals catalytic and regulatory mechanisms of eukaryotic phospholipase D.
Cell Res., 30, 2020
6KZ9
DownloadVisualize
BU of 6kz9 by Molmil
Crystal structure of plant Phospholipase D alpha
分子名称: CALCIUM ION, Phospholipase D alpha 1
著者Li, J.X, Yu, F, Zhang, P.
登録日2019-09-23
公開日2019-10-30
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Crystal structure of plant PLD alpha 1 reveals catalytic and regulatory mechanisms of eukaryotic phospholipase D.
Cell Res., 30, 2020
6XAI
DownloadVisualize
BU of 6xai by Molmil
Crystal structure of NzeB in complex with cyclo-(L-Trp-L-Pro)
分子名称: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, 1,2-ETHANEDIOL, NzeB, ...
著者Shende, V.V, Khatri, Y, Newmister, S.A, Sanders, J.N, Lindovska, P, Yu, F, Doyon, T.J, Kim, J, Movassaghi, M, Houk, K.N, Sherman, D.H.
登録日2020-06-04
公開日2021-06-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.489 Å)
主引用文献Structure and Function of NzeB, a Versatile C-C and C-N Bond-Forming Diketopiperazine Dimerase.
J.Am.Chem.Soc., 142, 2020
6XAK
DownloadVisualize
BU of 6xak by Molmil
Crystal structure of NzeB in complex with cyclo-(L-Trp-L-Pro) and cyclo-(L-Trp-L-Trp)
分子名称: (3S,6S)-3,6-bis[(1H-indol-3-yl)methyl]piperazine-2,5-dione, (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, 1,2-ETHANEDIOL, ...
著者Shende, V.V, Khatri, Y, Newmister, S.A, Sanders, J.N, Lindovska, P, Yu, F, Doyon, T.J, Kim, J, Movassaghi, M, Houk, K.N, Sherman, D.H.
登録日2020-06-04
公開日2021-06-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.479 Å)
主引用文献Structure and Function of NzeB, a Versatile C-C and C-N Bond-Forming Diketopiperazine Dimerase.
J.Am.Chem.Soc., 142, 2020
6XAJ
DownloadVisualize
BU of 6xaj by Molmil
Crystal structure of NzeB
分子名称: 1,2-ETHANEDIOL, NzeB, PROTOPORPHYRIN IX CONTAINING FE
著者Shende, V.V, Khatri, Y, Newmister, S.A, Sanders, J.N, Lindovska, P, Yu, F, Doyon, T.J, Kim, J, Movassaghi, M, Houk, K.N, Sherman, D.H.
登録日2020-06-04
公開日2021-06-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.498 Å)
主引用文献Structure and Function of NzeB, a Versatile C-C and C-N Bond-Forming Diketopiperazine Dimerase.
J.Am.Chem.Soc., 142, 2020
6XAM
DownloadVisualize
BU of 6xam by Molmil
Crystal structure of NzeB in complex with cyclo-(L-Trp-L-homoalanine)
分子名称: (3S,6S)-3-ethyl-6-[(1H-indol-3-yl)methyl]piperazine-2,5-dione, 1,2-ETHANEDIOL, NzeB, ...
著者Shende, V.V, Khatri, Y, Newmister, S.A, Sanders, J.N, Lindovska, P, Yu, F, Doyon, T.J, Kim, J, Movassaghi, M, Houk, K.N, Sherman, D.H.
登録日2020-06-04
公開日2021-06-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.481 Å)
主引用文献Structure and Function of NzeB, a Versatile C-C and C-N Bond-Forming Diketopiperazine Dimerase.
J.Am.Chem.Soc., 142, 2020
6XAL
DownloadVisualize
BU of 6xal by Molmil
Crystal structure of NzeB in complex with cyclo-(L-Trp-L-Val)
分子名称: (3S,6S)-3-[(1H-indol-3-yl)methyl]-6-(propan-2-yl)piperazine-2,5-dione, NzeB, PROTOPORPHYRIN IX CONTAINING FE
著者Shende, V.V, Khatri, Y, Newmister, S.A, Sanders, J.N, Lindovska, P, Yu, F, Doyon, T.J, Kim, J, Movassaghi, M, Houk, K.N, Sherman, D.H.
登録日2020-06-04
公開日2021-06-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.349 Å)
主引用文献Structure and Function of NzeB, a Versatile C-C and C-N Bond-Forming Diketopiperazine Dimerase.
J.Am.Chem.Soc., 142, 2020
4Z9F
DownloadVisualize
BU of 4z9f by Molmil
Halohydrin hydrogen-halide-lyase, HheA
分子名称: CHLORIDE ION, Halohydrin epoxidase A
著者Watanabe, F, Yu, F, Ohtaki, A, Yamanaka, Y, Noguchi, K, Yohda, M, Odaka, M.
登録日2015-04-10
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074
Proteins, 83, 2015
4ZU3
DownloadVisualize
BU of 4zu3 by Molmil
Halohydrin hydrogen-halide-lyases, HheB
分子名称: 3-hydroxypentanedinitrile, Halohydrin epoxidase B, MAGNESIUM ION, ...
著者Watanabe, F, Yu, F, Ohtaki, A, Yamanaka, Y, Noguchi, K, Yohda, M, Odaka, M.
登録日2015-05-15
公開日2015-11-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074
Proteins, 83, 2015
4ZD6
DownloadVisualize
BU of 4zd6 by Molmil
Halohydrin hydrogen-halide-lyase, HheB
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Halohydrin epoxidase B, ...
著者Watanabe, F, Yu, F, Ohtaki, A, Yamanaka, Y, Noguchi, K, Yohda, M, Odaka, M.
登録日2015-04-17
公開日2015-11-04
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074
Proteins, 83, 2015
4HUQ
DownloadVisualize
BU of 4huq by Molmil
Crystal Structure of a transporter
分子名称: Energy-coupling factor transporter ATP-binding protein EcfA 1, Energy-coupling factor transporter ATP-binding protein EcfA 2, Energy-coupling factor transporter transmembrane protein EcfT, ...
著者Zhang, P, Xu, K, Zhang, M, Zhao, Q, Yu, F.
登録日2012-11-03
公開日2013-04-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.998 Å)
主引用文献Crystal structure of a folate energy-coupling factor transporter from Lactobacillus brevis.
Nature, 497, 2013

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon