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1VFG
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BU of 1vfg by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA (75-MER), poly A polymerase
著者Tomita, K, Fukai, S, Ishitani, R, Ueda, T, Takeuchi, N, Vassylyev, D.G, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-04-13
公開日2004-08-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis for template-independent RNA polymerization.
Nature, 430, 2004
2DR8
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BU of 2dr8 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC and CTP
分子名称: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR9
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BU of 2dr9 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (34-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DRA
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BU of 2dra by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC and ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CCA-adding enzyme, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR5
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BU of 2dr5 by Molmil
Complex structure of CCA adding enzyme with mini-helix lacking CCA
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (32-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-10-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DRB
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BU of 2drb by Molmil
Complex structure of CCA-adding enzyme with tRNAminiCCA
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (35-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR7
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BU of 2dr7 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (33-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DVI
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BU of 2dvi by Molmil
Complex structure of CCA-adding enzyme, mini-DCC and CTP
分子名称: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-07-31
公開日2006-11-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
4WC5
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BU of 4wc5 by Molmil
Structure of tRNA-processing enzyme complex 3
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
8IDF
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BU of 8idf by Molmil
Crystal structure of human TUT1 complexed with U6 snRNA
分子名称: RNA (53-MER), Speckle targeted PIP5K1A-regulated poly(A) polymerase, ZINC ION
著者Yamashita, S, Tomita, K.
登録日2023-02-13
公開日2023-08-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Mechanism of U6 snRNA oligouridylation by human TUT1.
Nat Commun, 14, 2023
8XHR
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BU of 8xhr by Molmil
Crystal structure of Mycobacterium tuberculosis MenT3 bound with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Nucleotidyl transferase AbiEii/AbiGii toxin family protein
著者Liu, J, Yashiro, Y, Tomita, K.
登録日2023-12-18
公開日2024-02-28
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate specificity of Mycobacterium tuberculosis tRNA terminal nucleotidyltransferase toxin MenT3.
Nucleic Acids Res., 52, 2024
4WBY
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BU of 4wby by Molmil
tRNA-processing enzyme (apo form I)
分子名称: GLYCEROL, Poly A polymerase, SULFATE ION
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC4
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BU of 4wc4 by Molmil
tRNA-processing enzyme complex 2
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC6
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BU of 4wc6 by Molmil
Structure of tRNA-processing enzyme complex 4
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-mer)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC0
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BU of 4wc0 by Molmil
tRNA-processing enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
6IW6
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BU of 6iw6 by Molmil
Crystal structure of the Lin28-interacting module of human TUT4
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, Terminal uridylyltransferase 4,Terminal uridylyltransferase 4, ...
著者Yamashita, S, Tomita, K.
登録日2018-12-04
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Crystal structure of the Lin28-interacting module of human terminal uridylyltransferase that regulates let-7 expression.
Nat Commun, 10, 2019
293D
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BU of 293d by Molmil
INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX
分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, SODIUM ION, ...
著者Ohishi, H, Nakanishi, I, Inubushi, K, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J, Hakoshima, T, Tomita, K.
登録日1996-10-09
公開日1996-12-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Interaction between the left-handed Z-DNA and polyamine-2. The crystal structure of the d(CG)3 and spermidine complex.
FEBS Lett., 391, 1996
8IE2
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BU of 8ie2 by Molmil
Crystal structure of Lactiplantibacillus plantarum GlyRS
分子名称: Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit
著者Yamashita, S, Tomita, K.
登録日2023-02-15
公開日2023-06-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria.
J.Biochem., 174, 2023
6AJN
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BU of 6ajn by Molmil
Crystal structure of AtaTR bound with AcCoA
分子名称: ACETYL COENZYME *A, DUF1778 domain-containing protein, N-acetyltransferase
著者Yashiro, Y, Yamashita, S, Tomita, K.
登録日2018-08-28
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.302 Å)
主引用文献Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
6AJM
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BU of 6ajm by Molmil
Crystal structure of apo AtaTR
分子名称: DUF1778 domain-containing protein, N-acetyltransferase, TRIETHYLENE GLYCOL
著者Yashiro, Y, Yamashita, S, Tomita, K.
登録日2018-08-28
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.604 Å)
主引用文献Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
8GU3
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BU of 8gu3 by Molmil
Crystal structure of Caenorhabditis elegans METT-10 methyltransferase domain
分子名称: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
著者Ju, J, Tomita, K.
登録日2022-09-09
公開日2023-02-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structure of the Caenorhabditis elegans m6A methyltransferase METT10 that regulates SAM homeostasis.
Nucleic Acids Res., 51, 2023
292D
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BU of 292d by Molmil
INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX
分子名称: 1-(AMINOETHYL)AMINO-4-AMINOBUTANE, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, ...
著者Ohishi, H, Kunisawa, S, Van Der Marel, G, Van Boom, J.H, Rich, A, Wang, A.H.-J, Tomita, K, Hakoshima, T.
登録日1991-10-09
公開日1996-12-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Interaction between the left-handed Z-DNA and polyamine. The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex.
FEBS Lett., 284, 1991
3H38
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BU of 3h38 by Molmil
The structure of CCA-adding enzyme apo form II
分子名称: TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H37
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BU of 3h37 by Molmil
The structure of CCA-adding enzyme apo form I
分子名称: TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2014-02-05
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009
3H3A
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BU of 3h3a by Molmil
The complex structure of CCA-adding enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, TRNA nucleotidyl transferase-related protein
著者Toh, Y, Tomita, K.
登録日2009-04-16
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme
Embo J., 28, 2009

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