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1CLQ
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BU of 1clq by Molmil
CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION
分子名称: CALCIUM ION, DNA (5'-D(*AP*GP*TP*AP*GP*TP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*AP*CP*TP*AP*CP*T)-3'), ...
著者Shamoo, Y, Steitz, T.A.
登録日1999-04-30
公開日1999-10-28
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
1B8H
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BU of 1b8h by Molmil
SLIDING CLAMP, DNA POLYMERASE
分子名称: DNA POLYMERASE PROCESSIVITY COMPONENT, DNA POLYMERASE fragment
著者Shamoo, Y, Steitz, T.A.
登録日1999-02-01
公開日1999-02-09
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
1B77
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BU of 1b77 by Molmil
BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE
分子名称: PROTEIN (SLIDING CLAMP)
著者Shamoo, Y, Steitz, T.A.
登録日1999-01-27
公開日1999-02-08
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
1HA1
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BU of 1ha1 by Molmil
HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
分子名称: HNRNP A1
著者Shamoo, Y, Krueger, U, Rice, L, Williams, K.R, Steitz, T.A.
登録日1996-10-30
公開日1997-05-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of the two RNA binding domains of human hnRNP A1 at 1.75 A resolution.
Nat.Struct.Biol., 4, 1997
6C0Z
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BU of 6c0z by Molmil
Crystal structure of Efga from Methylobacterium extorquens in complex with formaldehyde
分子名称: Efga, FORMIC ACID, oxydimethanol
著者Shamoo, Y, Davlieva, M.
登録日2018-01-03
公開日2019-01-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Crystal structure of Efga form Methylobacterium extorquens in complex with formaldehyde
To Be Published
6BWS
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BU of 6bws by Molmil
Crystal structure of Efga from Methylobacterium extorquens
分子名称: Glycolate utilization protein
著者Shamoo, Y, Davlieva, M.
登録日2017-12-15
公開日2019-01-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of Efga from Methylobacterium extorquens
To Be Published
6C84
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BU of 6c84 by Molmil
Crystal structure of PBP5 from Enterococcus faecium
分子名称: Penicillin-binding protein
著者Shamoo, Y, Davlieva, M.
登録日2018-01-24
公開日2019-02-06
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.511 Å)
主引用文献Crystal structure of PBP5 from Enterococcus faecium
To Be Published
1GPC
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BU of 1gpc by Molmil
CORE GP32, DNA-BINDING PROTEIN
分子名称: PROTEIN (CORE GP32), ZINC ION
著者Shamoo, Y, Friedman, A.M, Parsons, M.R, Konigsberg, W.H, Steitz, T.A.
登録日1995-06-01
公開日1995-10-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA.
Nature, 376, 1995
8D84
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BU of 8d84 by Molmil
E. faecium MurAA in complex with UDP-N-acetylmuramic acid (UNAM) and a covalent adduct of PEP with Cys119
分子名称: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid, UDP-N-acetylglucosamine 1-carboxyvinyltransferase
著者Zhou, Y, Shamoo, Y.
登録日2022-06-07
公開日2023-07-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献E. faecium MurAA in complex with fosfomycin and UNAG
To Be Published
2P3S
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BU of 2p3s by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (G214R/Q199R)
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
著者Counago, R, Wilson, C.J, Myers, J, Wu, G, Shamoo, Y.
登録日2007-03-09
公開日2008-01-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (G214R/Q199R)
To be Published
7TB0
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BU of 7tb0 by Molmil
E. faecium MurAA in complex with fosfomycin and UNAG
分子名称: CHLORIDE ION, POTASSIUM ION, SODIUM ION, ...
著者Zhou, Y, Shamoo, Y.
登録日2021-12-21
公開日2022-12-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Enolpyruvate transferase MurAA A149E , identified during adaptation of Enterococcus faecium to daptomycin, increases stability of MurAA-MurG interaction.
J.Biol.Chem., 299, 2023
8U55
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BU of 8u55 by Molmil
Crystal structure of Enterococcus faecium EnGen25 Penicillin-binding protein 5 (PBP5)
分子名称: Penicillin-binding protein 5
著者Pemberton, O.A, Shamoo, Y.
登録日2023-09-12
公開日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of Enterococcus faecium EnGen25 Penicillin-binding protein 5 (PBP5)
To Be Published
1U1K
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BU of 1u1k by Molmil
Crystal Structure of UP1 Complexed With d(TTAGGGTT 7DA GGG); A Human Telomeric Repeat Containing 7-deaza-adenine
分子名称: 5'-D(*TP*AP*GP*GP*GP*TP*TP*(7DA)P*GP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein A1
著者Myers, J.C, Shamoo, Y.
登録日2004-07-15
公開日2004-09-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM).
J.Mol.Biol., 342, 2004
1U1N
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BU of 1u1n by Molmil
Crystal Structure of UP1 Complexed With d(TTAGGGTTA (PRN)GG); A Human Telomeric Repeat Containing Nebularine
分子名称: 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*(PRN)P*GP*G)-3', Heterogeneous nuclear ribonucleoprotein A1
著者Myers, J.C, Shamoo, Y.
登録日2004-07-15
公開日2004-09-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Human UP1 as a Model for Understanding Purine Recognition in the Family of Proteins Containing the RNA Recognition Motif (RRM).
J.Mol.Biol., 342, 2004
2EU8
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BU of 2eu8 by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R)
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ...
著者Chen, S, Shamoo, Y.
登録日2005-10-28
公開日2006-06-27
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献In vivo molecular evolution reveals biophysical origins of organismal fitness.
Mol.Cell, 22, 2006
3P9U
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BU of 3p9u by Molmil
Crystal structure of TetX2 from Bacteroides thetaiotaomicron with substrate analogue
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, TetX2 protein
著者Walkiewicz, K, Davlieva, M, Sun, C, Lau, K, Shamoo, Y.
登録日2010-10-18
公開日2011-04-27
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Crystal structure of Bacteroides thetaiotaomicron TetX2: a tetracycline degrading monooxygenase at 2.8 A resolution.
Proteins, 79, 2011
4PDB
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BU of 4pdb by Molmil
CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER
分子名称: 30S ribosomal protein S8, SELEX RNA aptamer
著者Davlieva, M, Shamoo, Y, Nikonowicz, E.P.
登録日2014-04-17
公開日2014-09-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.
Nucleic Acids Res., 42, 2014
5HEV
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BU of 5hev by Molmil
Crystal Structure of the beryllofluoride-activated LiaR from Enterococcus faecium
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Response regulator protein VraR
著者Davlieva, M, Shamoo, Y.
登録日2016-01-06
公開日2016-11-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.192 Å)
主引用文献An Adaptive Mutation in Enterococcus faecium LiaR Associated with Antimicrobial Peptide Resistance Mimics Phosphorylation and Stabilizes LiaR in an Activated State.
J.Mol.Biol., 428, 2016
2QAJ
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BU of 2qaj by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R/G213E)
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
著者Counago, R, Wilson, C.J, Myers, J, Wu, G, Shamoo, Y.
登録日2007-06-15
公開日2008-04-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R/G213E)
To be Published
4WUH
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BU of 4wuh by Molmil
Crystal structure of E. faecalis DNA binding domain LiaR wild type complexed with 22bp DNA
分子名称: DNA (5'-D(P*AP*AP*AP*TP*CP*G)-3'), DNA (5'-D(P*GP*GP*AP*CP*TP*TP*AP*AP*GP*AP*AP*CP*GP*AP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*CP*TP*TP*AP*AP*GP*TP*CP*C)-3'), ...
著者Davlieva, M, Shamoo, Y.
登録日2014-10-31
公開日2015-05-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.294 Å)
主引用文献A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin.
Nucleic Acids Res., 43, 2015
4WSZ
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BU of 4wsz by Molmil
Crystal structure of the DNA binding domains of wild type LiaR from E. faecalis
分子名称: ACETATE ION, GLYCEROL, PRASEODYMIUM ION, ...
著者Davlieva, M, Shamoo, Y.
登録日2014-10-29
公開日2015-05-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.769 Å)
主引用文献A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin.
Nucleic Acids Res., 43, 2015
4WT0
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BU of 4wt0 by Molmil
Crystal structure of the DNA binding domains of LiaRD191N from E. faecalis
分子名称: PRASEODYMIUM ION, Response regulator receiver domain protein
著者Davlieva, M, Shamoo, Y.
登録日2014-10-29
公開日2015-05-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin.
Nucleic Acids Res., 43, 2015
4WUL
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BU of 4wul by Molmil
Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed with 26bp DNA
分子名称: DNA (26-MER), Response regulator receiver domain protein
著者Davlieva, M, Shamoo, Y.
登録日2014-11-02
公開日2015-05-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin.
Nucleic Acids Res., 43, 2015
4WU4
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BU of 4wu4 by Molmil
Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed with 22bp DNA
分子名称: DNA (5'-D(P*AP*AP*AP*TP*CP*GP*TP*TP*CP*TP*TP*AP*AP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*TP*TP*AP*AP*GP*AP*AP*CP*GP*AP*TP*TP*T)-3'), GLYCEROL, ...
著者Davlieva, M, Shamoo, Y.
登録日2014-10-31
公開日2015-05-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin.
Nucleic Acids Res., 43, 2015
2A1K
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BU of 2a1k by Molmil
RB69 single-stranded DNA binding protein core domain
分子名称: ZINC ION, gp32 single stranded DNA binding protein
著者Sun, S, Geng, L, Shamoo, Y.
登録日2005-06-20
公開日2006-05-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity.
Proteins, 65, 2006

 

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