Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3KB5
DownloadVisualize
BU of 3kb5 by Molmil
PRY-SPRY domain of human TRIM72
分子名称: Tripartite motif-containing protein 72
著者Park, E.Y, Kwon, O.-B, Jeong, B.-C, Song, H.K.
登録日2009-10-20
公開日2009-12-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of PRY-SPRY domain of human TRIM72
Proteins, 2009
2DS6
DownloadVisualize
BU of 2ds6 by Molmil
Structure of the ZBD in the tetragonal crystal form
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, ZINC ION
著者Park, E.Y, Lee, B.G, Hong, S.B, Song, H.K.
登録日2006-06-22
公開日2007-02-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2DS8
DownloadVisualize
BU of 2ds8 by Molmil
Structure of the ZBD-XB complex
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, SspB-tail peptide, ZINC ION
著者Park, E.Y, Lee, B.G, Hong, S.B, Kim, H.W, Song, H.K.
登録日2006-06-22
公開日2007-02-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2H8G
DownloadVisualize
BU of 2h8g by Molmil
5'-Methylthioadenosine Nucleosidase from Arabidopsis thaliana
分子名称: 5'-Methylthioadenosine Nucleosidase, ADENINE
著者Park, E.Y, Oh, S.I, Nam, M.J, Shin, J.S, Kim, K.N, Song, H.K.
登録日2006-06-07
公開日2006-10-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of 5'-methylthioadenosine nucleosidase from Arabidopsis thaliana at 1.5-A resolution
Proteins, 65, 2006
2DS7
DownloadVisualize
BU of 2ds7 by Molmil
Structure of the ZBD in the hexagonal crystal form
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, ZINC ION
著者Park, E.Y, Lee, B.G, Hong, S.B, Song, H.K.
登録日2006-06-22
公開日2007-02-13
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
1TX6
DownloadVisualize
BU of 1tx6 by Molmil
trypsin:BBI complex
分子名称: Bowman-Birk type trypsin inhibitor, CALCIUM ION, Trypsin
著者Song, H.K, Park, E.Y, Kim, J.A, Kim, H.W, Kim, Y.S.
登録日2004-07-02
公開日2005-03-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the Bowman-Birk inhibitor from barley seeds in ternary complex with porcine trypsin
J.Mol.Biol., 343, 2004
2DS5
DownloadVisualize
BU of 2ds5 by Molmil
Structure of the ZBD in the orthorhomibic crystal from
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, CALCIUM ION, TETRAETHYLENE GLYCOL, ...
著者Song, H.K, Park, E.Y, Lee, B.G, Hong, S.B.
登録日2006-06-22
公開日2007-02-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
3BSF
DownloadVisualize
BU of 3bsf by Molmil
Crystal Structure of the MTA/SAH nucleosidase
分子名称: ADENINE, At4g34840
著者Song, H.K, Park, E.Y, Choi, W.-S.
登録日2007-12-23
公開日2009-02-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of the MTA/SAH nucleosidase
To be Published
7WLG
DownloadVisualize
BU of 7wlg by Molmil
Cryo-EM structure of GH31 alpha-1,3-glucosidase from Lactococcus lactis subsp. cremoris
分子名称: Alpha-xylosidase
著者Ikegaya, M, Moriya, T, Adachi, N, Kawasaki, M, Park, E.Y, Miyazaki, T.
登録日2022-01-13
公開日2022-03-30
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
1R6M
DownloadVisualize
BU of 1r6m by Molmil
Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa In Complex With Phosphate
分子名称: PHOSPHATE ION, Ribonuclease PH
著者Choi, J.M, Park, E.Y, Kim, J.H, Chang, S.K, Cho, Y.
登録日2003-10-15
公開日2004-02-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Probing the functional importance of the hexameric ring structure of RNase PH
J.BIOL.CHEM., 279, 2004
1R6L
DownloadVisualize
BU of 1r6l by Molmil
Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Ribonuclease PH, SULFATE ION
著者Choi, J.M, Park, E.Y, Kim, J.H, Chang, S.K, Cho, Y.
登録日2003-10-15
公開日2004-02-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Probing the functional importance of the hexameric ring structure of RNase PH
J.BIOL.CHEM., 279, 2004
3WO3
DownloadVisualize
BU of 3wo3 by Molmil
Crystal structure of IL-18 in complex with IL-18 receptor alpha
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Tsutsumi, N, Kimura, T, Arita, K, Ariyoshi, M, Ohnishi, H, Kondo, N, Shirakawa, M, Kato, Z, Tochio, H.
登録日2013-12-19
公開日2014-12-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The structural basis for receptor recognition of human interleukin-18
Nat Commun, 5, 2014
6ITC
DownloadVisualize
BU of 6itc by Molmil
Structure of a substrate engaged SecA-SecY protein translocation machine
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Ma, C.Y, Wu, X.F, Sun, D.J, Park, E.Y, Rapoport, T.A, Gao, N, Long, L.
登録日2018-11-21
公開日2019-06-12
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Structure of the substrate-engaged SecA-SecY protein translocation machine.
Nat Commun, 10, 2019
8IUA
DownloadVisualize
BU of 8iua by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltose
分子名称: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ...
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IU8
DownloadVisualize
BU of 8iu8 by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae
分子名称: Candidate dextranase Glycoside hydrolase family 66, GLYCEROL
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IU9
DownloadVisualize
BU of 8iu9 by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with glucose
分子名称: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose, ...
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IUB
DownloadVisualize
BU of 8iub by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltotriose
分子名称: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, SULFATE ION, ...
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IUC
DownloadVisualize
BU of 8iuc by Molmil
Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with isomaltose
分子名称: 1,2-ETHANEDIOL, Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65, alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8J51
DownloadVisualize
BU of 8j51 by Molmil
Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase in complex with galactose
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase, ...
著者Ikegaya, M, Miyazaki, T.
登録日2023-04-21
公開日2023-07-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
8J50
DownloadVisualize
BU of 8j50 by Molmil
Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase
著者Ikegaya, M, Miyazaki, T.
登録日2023-04-21
公開日2023-07-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
8J52
DownloadVisualize
BU of 8j52 by Molmil
Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase mutant D304A in complex with alpha-1,4-galactobiose
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase, ...
著者Ikegaya, M, Miyazaki, T.
登録日2023-04-21
公開日2023-07-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
8J53
DownloadVisualize
BU of 8j53 by Molmil
Crystal structure of Bacteroides salyersiae GH31 alpha-galactosidase
分子名称: GH31 alpha-galactosidase
著者Ikegaya, M, Miyazaki, T.
登録日2023-04-21
公開日2023-07-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
5ZOH
DownloadVisualize
BU of 5zoh by Molmil
Crystal structure of a far-red light-absorbing form of AnPixJg2_BV4 in complex with biliverdin
分子名称: BILIVERDINE IX ALPHA, GLYCEROL, Methyl-accepting chemotaxis protein
著者Miyazaki, T, Fushimi, K, Narikawa, R.
登録日2018-04-13
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Rational conversion of chromophore selectivity of cyanobacteriochromes to accept mammalian intrinsic biliverdin.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3KTJ
DownloadVisualize
BU of 3ktj by Molmil
Structure of ClpP in complex with ADEP2 in monoclinic crystal form
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 2
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2012-12-12
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTH
DownloadVisualize
BU of 3kth by Molmil
Structure of ClpP from Bacillus subtilis in orthorombic crystal form
分子名称: ATP-dependent Clp protease proteolytic subunit
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010

 

123>

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon