Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4YSH
DownloadVisualize
BU of 4ysh by Molmil
Crystal structure of glycine oxidase from Geobacillus kaustophilus
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, ...
著者Shiono, T, Nomura, T, Arai, R.
登録日2015-03-17
公開日2016-03-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of glycine oxidase from Geobacillus kaustophilus
to be published
6M0D
DownloadVisualize
BU of 6m0d by Molmil
Beijerinckia indica beta-fructosyltransferase
分子名称: Levansucrase, MAGNESIUM ION
著者Tonozuka, T.
登録日2020-02-21
公開日2020-08-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a glycoside hydrolase family 68 beta-fructosyltransferase from Beijerinckia indica subsp. indica in complex with fructose.
Biosci.Biotechnol.Biochem., 84, 2020
6M0E
DownloadVisualize
BU of 6m0e by Molmil
Beijerinckia indica beta-fructosyltransferase complexed with fructose
分子名称: Levansucrase, MAGNESIUM ION, beta-D-fructofuranose, ...
著者Tonozuka, T.
登録日2020-02-21
公開日2020-08-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of a glycoside hydrolase family 68 beta-fructosyltransferase from Beijerinckia indica subsp. indica in complex with fructose.
Biosci.Biotechnol.Biochem., 84, 2020
5B6T
DownloadVisualize
BU of 5b6t by Molmil
Catalytic domain of Coprinopsis cinerea GH62 alpha-L-arabinofuranosidase complexed with Pb
分子名称: CALCIUM ION, GLYCEROL, Glycosyl hydrolase family 62 protein, ...
著者Tonozuka, T.
登録日2016-06-01
公開日2016-09-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structure of the Catalytic Domain of alpha-L-Arabinofuranosidase from Coprinopsis cinerea, CcAbf62A, Provides Insights into Structure-Function Relationships in Glycoside Hydrolase Family 62
Appl. Biochem. Biotechnol., 181, 2017
5B6S
DownloadVisualize
BU of 5b6s by Molmil
Catalytic domain of Coprinopsis cinerea GH62 alpha-L-arabinofuranosidase
分子名称: CALCIUM ION, GLYCEROL, Glycosyl hydrolase family 62 protein
著者Tonozuka, T.
登録日2016-06-01
公開日2016-09-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of the Catalytic Domain of alpha-L-Arabinofuranosidase from Coprinopsis cinerea, CcAbf62A, Provides Insights into Structure-Function Relationships in Glycoside Hydrolase Family 62
Appl. Biochem. Biotechnol., 181, 2017
5Z0U
DownloadVisualize
BU of 5z0u by Molmil
Thermoactinomyces vulgaris R-47 alpha-amylase I (TVA I) 11 residues (from A363 to N373) deletion mutant (Del11)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Neopullulanase 1
著者Tonozuka, T.
登録日2017-12-21
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Mutagenesis-induced conformational change in domain B of a pullulan-hydrolyzing alpha-amylase TVA I
Amylase, 2, 2018
5Z0T
DownloadVisualize
BU of 5z0t by Molmil
Thermoactinomyces vulgaris R-47 alpha-amylase I (TVA I) mutant A357V/Q359N/Y360E (AQY/VNE)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Neopullulanase 1
著者Tonozuka, T.
登録日2017-12-21
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Mutagenesis-induced conformational change in domain B of a pullulan-hydrolyzing alpha-amylase TVA I
Amylase, 2, 2018
3VSS
DownloadVisualize
BU of 3vss by Molmil
Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain complexed with fructose
分子名称: Beta-fructofuranosidase, beta-D-fructofuranose
著者Tonozuka, T, Tamaki, A, Yokoi, G, Miyazaki, T, Ichikawa, M, Nishikawa, A, Ohta, Y, Hidaka, Y, Katayama, K, Hatada, Y, Ito, T, Fujita, K.
登録日2012-05-08
公開日2012-08-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 beta-fructofuranosidase
Enzyme.Microb.Technol., 51, 2012
3VSR
DownloadVisualize
BU of 3vsr by Molmil
Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain
分子名称: Beta-fructofuranosidase
著者Tonozuka, T, Tamaki, A, Yokoi, G, Miyazaki, T, Ichikawa, M, Nishikawa, A, Ohta, Y, Hidaka, Y, Katayama, K, Hatada, Y, Ito, T, Fujita, K.
登録日2012-05-08
公開日2012-08-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 beta-fructofuranosidase
Enzyme.Microb.Technol., 51, 2012
2ZYK
DownloadVisualize
BU of 2zyk by Molmil
Crystal structure of cyclo/maltodextrin-binding protein complexed with gamma-cyclodextrin
分子名称: Cyclooctakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein
著者Tonozuka, T, Sogawa, A, Yamada, M, Matsumoto, N, Yoshida, H, Kamitori, S, Ichikawa, K, Mizuno, M, Nishikawa, A, Sakano, Y.
登録日2009-01-26
公開日2009-02-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for cyclodextrin recognition by Thermoactinomyces vulgaris cyclo/maltodextrin-binding protein
Febs J., 274, 2007
1IZP
DownloadVisualize
BU of 1izp by Molmil
F46L mutant of bovine pancreatic ribonuclease A
分子名称: RIBONUCLEASE A
著者Kadonosono, T, Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2002-10-11
公開日2003-11-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A
Biochemistry, 42, 2003
1IZQ
DownloadVisualize
BU of 1izq by Molmil
F46V mutant of bovine pancreatic ribonuclease A
分子名称: RIBONUCLEASE A
著者Kadonosono, T, Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2002-10-11
公開日2003-11-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A
Biochemistry, 42, 2003
1IZR
DownloadVisualize
BU of 1izr by Molmil
F46A mutant of bovine pancreatic ribonuclease A
分子名称: RIBONUCLEASE A
著者Kadonosono, T, Chatani, E, Hayashi, R, Moriyama, H, Ueki, T.
登録日2002-10-11
公開日2003-11-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Minimization of cavity size ensures protein stability and folding: structures of Phe46-replaced bovine pancreatic RNase A
Biochemistry, 42, 2003
8I2Q
DownloadVisualize
BU of 8i2q by Molmil
Beijerinckia indica beta-fructosyltransferase variant H395R/F473Y
分子名称: Beta-fructosyltransferase, GLYCEROL
著者Tonozuka, T.
登録日2023-01-15
公開日2023-06-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Characterization and alteration of product specificity of Beijerinckia indica subsp. indica beta-fructosyltransferase.
Biosci.Biotechnol.Biochem., 87, 2023
8I2R
DownloadVisualize
BU of 8i2r by Molmil
Beijerinckia indica beta-fructosyltransferase variant H395R/F473Y in complex with fructose
分子名称: Beta-fructosyltransferase, MAGNESIUM ION, beta-D-fructofuranose, ...
著者Tonozuka, T.
登録日2023-01-15
公開日2023-06-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Characterization and alteration of product specificity of Beijerinckia indica subsp. indica beta-fructosyltransferase.
Biosci.Biotechnol.Biochem., 87, 2023
8XXA
DownloadVisualize
BU of 8xxa by Molmil
Rhodothermus marinus alpha-amylase RmGH13_47A CBM48-A-B-C domains in complex with branched pentasaccharide
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Tonozuka, T.
登録日2024-01-18
公開日2024-02-07
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis for the recognition of alpha-1,6-branched alpha-glucan by GH13_47 alpha-amylase from Rhodothermus marinus.
Proteins, 2024
8XX9
DownloadVisualize
BU of 8xx9 by Molmil
Rhodothermus marinus alpha-amylase RmGH13_47A CBM48-A-B-C domains
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
著者Tonozuka, T.
登録日2024-01-18
公開日2024-02-07
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis for the recognition of alpha-1,6-branched alpha-glucan by GH13_47 alpha-amylase from Rhodothermus marinus.
Proteins, 2024
8ZH4
DownloadVisualize
BU of 8zh4 by Molmil
HIV-1 integrase core domain in complex with compound 5
分子名称: (2~{S})-2-(4',5-dimethylspiro[1,2-dihydroindene-3,1'-cyclohexane]-4-yl)-2-[(2-methylpropan-2-yl)oxy]ethanoic acid, Integrase, SULFATE ION, ...
著者Furuzono, T, Orita, T, Nomura, A, Adachi, T.
登録日2024-05-10
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Design and synthesis of novel and potent allosteric HIV-1 integrase inhibitors with a spirocyclic moiety.
Bioorg.Med.Chem.Lett., 2024
8ZHA
DownloadVisualize
BU of 8zha by Molmil
HIV-1 integrase core domain in complex with compound 15
分子名称: (2~{S})-2-[7-(cycloheptylcarbamoyl)-4',5-dimethyl-spiro[1,2-dihydroindene-3,1'-cyclohexane]-4-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid, Integrase, SULFATE ION, ...
著者Furuzono, T, Orita, T, Nomura, A, Adachi, T.
登録日2024-05-10
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Design and synthesis of novel and potent allosteric HIV-1 integrase inhibitors with a spirocyclic moiety.
Bioorg.Med.Chem.Lett., 2024
5AWP
DownloadVisualize
BU of 5awp by Molmil
Arthrobacter globiformis T6 isomalto-dextranase complexed with isomaltose
分子名称: Isomaltodextranase, PHOSPHATE ION, alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose
著者Tonozuka, T.
登録日2015-07-08
公開日2015-09-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure and Mutational Analysis of Isomalto-dextranase, a Member of Glycoside Hydrolase Family 27
J.Biol.Chem., 290, 2015
5AWQ
DownloadVisualize
BU of 5awq by Molmil
Arthrobacter globiformis T6 isomalto-dextranse complexed with panose
分子名称: Isomaltodextranase, PHOSPHATE ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ...
著者Tonozuka, T.
登録日2015-07-08
公開日2015-09-09
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Crystal Structure and Mutational Analysis of Isomalto-dextranase, a Member of Glycoside Hydrolase Family 27
J.Biol.Chem., 290, 2015
5AWO
DownloadVisualize
BU of 5awo by Molmil
Arthrobacter globiformis T6 isomalto-dextranse
分子名称: ACETATE ION, Isomaltodextranase, PHOSPHATE ION
著者Tonozuka, T.
登録日2015-07-08
公開日2015-09-09
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Crystal Structure and Mutational Analysis of Isomalto-dextranase, a Member of Glycoside Hydrolase Family 27
J.Biol.Chem., 290, 2015
7E5O
DownloadVisualize
BU of 7e5o by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with antibody NT-193
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NT-193 Heavy chain, NT-193 Light chain, ...
著者Kita, S, Onodera, T, Adachi, Y, Moriayma, S, Nomura, T, Tadokoro, T, Anraku, Y, Yumoto, K, Tian, C, Fukuhara, H, Suzuki, T, Tonouchi, K, Sasaki, J, Sun, L, Hashiguchi, T, Takahashi, Y, Maenaka, K.
登録日2021-02-19
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A SARS-CoV-2 antibody broadly neutralizes SARS-related coronaviruses and variants by coordinated recognition of a virus-vulnerable site.
Immunity, 54, 2021
6JR6
DownloadVisualize
BU of 6jr6 by Molmil
Flavobacterium johnsoniae GH31 dextranase, FjDex31A
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Candidate alpha-glycosidase Glycoside hydrolase family 31
著者Tonozuka, T.
登録日2019-04-02
公開日2019-04-24
最終更新日2020-04-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insights into polysaccharide recognition by Flavobacterium johnsoniae dextranase, a member of glycoside hydrolase family 31.
Febs J., 287, 2020
6JR7
DownloadVisualize
BU of 6jr7 by Molmil
Flavobacterium johnsoniae GH31 dextranase, FjDex31A, complexed with glucose
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Candidate alpha-glycosidase Glycoside hydrolase family 31, ...
著者Tonozuka, T.
登録日2019-04-02
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural insights into polysaccharide recognition by Flavobacterium johnsoniae dextranase, a member of glycoside hydrolase family 31.
Febs J., 287, 2020

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon