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2ZPN
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BU of 2zpn by Molmil
The crystal structure of Saccharomyces cerevisiae Atg8- Atg19(412-415) complex
分子名称: Autophagy-related protein 8, SULFATE ION, Saccharomyces cerevisiae Atg19(412-415)
著者Noda, N.N, Inagaki, F.
登録日2008-07-17
公開日2008-12-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of target recognition by Atg8/LC3 during selective autophagy
Genes Cells, 13, 2008
3VH3
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BU of 3vh3 by Molmil
Crystal structure of Atg7CTD-Atg8 complex
分子名称: Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
著者Noda, N.N, Satoo, K, Inagaki, F.
登録日2011-08-23
公開日2011-09-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VP7
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BU of 3vp7 by Molmil
Crystal structure of the beta-alpha repeated, autophagy-specific (BARA) domain of Vps30/Atg6
分子名称: Vacuolar protein sorting-associated protein 30
著者Noda, N.N, Kobayashi, T, Adachi, W, Fujioka, Y, Ohsumi, Y, Inagaki, F.
登録日2012-02-28
公開日2012-03-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the novel C-terminal domain of vacuolar protein sorting 30/autophagy-related protein 6 and its specific role in autophagy.
J.Biol.Chem., 287, 2012
3W1S
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BU of 3w1s by Molmil
Crystal structure of Saccharomyces cerevisiae Atg12-Atg5 conjugate bound to the N-terminal domain of Atg16
分子名称: Autophagy protein 16, Autophagy protein 5, Ubiquitin-like protein ATG12
著者Noda, N.N, Fujioka, Y, Hanada, T, Ohsumi, Y, Inagaki, F.
登録日2012-11-20
公開日2012-12-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of the Atg12-Atg5 conjugate reveals a platform for stimulating Atg8-PE conjugation
Embo Rep., 14, 2013
3VH2
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BU of 3vh2 by Molmil
Crystal structure of Saccharomyces cerevisiae Atg7 (1-613)
分子名称: Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
著者Noda, N.N, Satoo, K, Inagaki, F.
登録日2011-08-23
公開日2011-09-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH1
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BU of 3vh1 by Molmil
Crystal structure of Saccharomyces cerevisiae Atg7 (1-595)
分子名称: Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
著者Noda, N.N, Satoo, K, Inagaki, F.
登録日2011-08-23
公開日2011-09-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH4
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BU of 3vh4 by Molmil
Crystal structure of Atg7CTD-Atg8-MgATP complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Autophagy-related protein 8, MAGNESIUM ION, ...
著者Noda, N.N, Satoo, K, Inagaki, F.
登録日2011-08-23
公開日2011-09-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
5JH9
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BU of 5jh9 by Molmil
Crystal structure of prApe1
分子名称: CACODYLATE ION, Vacuolar aminopeptidase 1, ZINC ION
著者Noda, N.N, Adachi, W, Inagaki, F.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JGF
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BU of 5jgf by Molmil
Crystal structure of mApe1
分子名称: Vacuolar aminopeptidase 1, ZINC ION
著者Noda, N.N, Adachi, W, Inagaki, F.
登録日2016-04-20
公開日2016-06-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
7W3O
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BU of 7w3o by Molmil
Crystal structure of human CYB5R3
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3 soluble form
著者Noda, N.N.
登録日2021-11-25
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
7W3N
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BU of 7w3n by Molmil
Crystal structure of Ufm1 fused to UFBP1 UFIM
分子名称: UFBP1 peptide,Ubiquitin-fold modifier 1
著者Noda, N.N.
登録日2021-11-25
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
2LI5
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BU of 2li5 by Molmil
NMR structure of Atg8-Atg7C30 complex
分子名称: Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7
著者Kumeta, H, Satoo, K, Noda, N.N, Fujioka, Y, Ogura, K, Nakatogawa, H, Ohsumi, Y, Inagaki, F.
登録日2011-08-23
公開日2011-11-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
7VEC
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BU of 7vec by Molmil
Crystal structure of GABARAP complexed with the TEX264 LIR phosphorylated at Ser271 and Ser272
分子名称: Gamma-aminobutyric acid receptor-associated protein, TEX264 phospho-LIR
著者Noda, N.N.
登録日2021-09-08
公開日2022-03-30
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Embo Rep., 23, 2022
3VXW
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BU of 3vxw by Molmil
Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM
分子名称: Autophagy-related protein 8, Peptide from Autophagy-related protein 32, SULFATE ION
著者Noda, N.N, Inagaki, F.
登録日2012-09-21
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy
J.Biol.Chem., 287, 2012
5H9W
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BU of 5h9w by Molmil
Crystal structure of Regnase PIN domain, form II
分子名称: Ribonuclease ZC3H12A, SODIUM ION
著者Yokogawa, M, Tsushima, T, Adachi, W, Noda, N.N, Inagaki, F.
登録日2015-12-29
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
5H9V
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BU of 5h9v by Molmil
Crystal structure of Regnase PIN domain, form I
分子名称: Ribonuclease ZC3H12A, SODIUM ION
著者Yokogawa, M, Tsushima, T, Adachi, W, Noda, N.N, Inagaki, F.
登録日2015-12-29
公開日2016-03-16
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
4P1W
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BU of 4p1w by Molmil
Crystal structure of Atg13(17BR)-Atg17-Atg29-Atg31 complex
分子名称: Atg13 17BR, Atg17, Atg29, ...
著者Fujioka, Y, Noda, N.N.
登録日2014-02-27
公開日2014-05-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis of starvation-induced assembly of the autophagy initiation complex.
Nat.Struct.Mol.Biol., 21, 2014
4P1N
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BU of 4p1n by Molmil
Crystal structure of Atg1-Atg13 complex
分子名称: Atg1 tMIT, Atg13 MIM
著者Fujioka, Y, Noda, N.N.
登録日2014-02-27
公開日2014-05-07
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis of starvation-induced assembly of the autophagy initiation complex.
Nat.Struct.Mol.Biol., 21, 2014
5JGE
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BU of 5jge by Molmil
Crystal structure of Atg19 coiled-coil complexed with Ape1 propeptide
分子名称: Ape1 propeptide, Autophagy-related protein 19
著者Watanabe, Y, Noda, N.N.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JHC
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BU of 5jhc by Molmil
Crystal structure of the self-assembled propeptides from Ape1
分子名称: Vacuolar aminopeptidase 1
著者Yamasaki, A, Noda, N.N.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JHF
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BU of 5jhf by Molmil
Crystal structure of Atg13(17BR)-Atg13(17LR)-Atg17-Atg29-Atg31 complex
分子名称: Atg13 17BR, Atg13 17LR, KLTH0C07942p, ...
著者Fujioka, Y, Noda, N.N.
登録日2016-04-21
公開日2016-08-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.21 Å)
主引用文献The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes.
Dev.Cell, 38, 2016
7BRN
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BU of 7brn by Molmil
Crystal structure of Atg40 AIM fused to Atg8
分子名称: 1,2-ETHANEDIOL, Autophagy-related protein 40,Autophagy-related protein 8, L-EPINEPHRINE
著者Yamasaki, A, Noda, N.N.
登録日2020-03-29
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.231 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRT
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BU of 7brt by Molmil
Crystal structure of Sec62 LIR fused to GABARAP
分子名称: Translocation protein SEC62,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2020-03-30
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRQ
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BU of 7brq by Molmil
Crystal structure of human FAM134B LIR fused to human GABARAP
分子名称: GLYCEROL, Reticulophagy regulator 1,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2020-03-29
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.404 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRU
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BU of 7bru by Molmil
Crystal structure of human RTN3 LIR fused to human GABARAP
分子名称: PHOSPHATE ION, Reticulon-3,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2020-03-30
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.149 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020

 

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