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7F47
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BU of 7f47 by Molmil
Cryo-EM structure of Rhizobium etli MprF
分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, Hypothetical conserved protein, [(2R)-1-[[(2R)-3-[(2S)-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (E)-octadec-9-enoate
著者Nishimura, M, Hirano, H, Kobayashi, K, Gill, C.P, Phan, C.N.K, Kise, Y, Kusakizako, T, Yamashita, K, Ito, Y, Roy, H, Nishizawa, T, Nureki, O.
登録日2021-06-17
公開日2022-06-22
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献Cryo-EM structure of Rhizobium etli MprF
To Be Published
2PA2
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BU of 2pa2 by Molmil
Crystal structure of human Ribosomal protein L10 core domain
分子名称: 60S ribosomal protein L10, POTASSIUM ION
著者Nishimura, M, Kaminishi, T, Takemoto, C, Kawazoe, M, Yoshida, T, Tanaka, A, Sugano, S, Shirouzu, M, Ohkubo, T, Yokoyama, S, Kobayashi, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-27
公開日2008-03-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold
J.Mol.Biol., 377, 2008
8IHL
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BU of 8ihl by Molmil
Overlapping tri-nucleosome
分子名称: DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H.
登録日2023-02-23
公開日2024-01-17
最終更新日2024-01-24
実験手法ELECTRON MICROSCOPY (7.64 Å)
主引用文献Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties.
Commun Biol, 7, 2024
1ZDV
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BU of 1zdv by Molmil
Solution Structure of the type 1 pilus assembly platform FimD(25-139)
分子名称: Outer membrane usher protein fimD
著者Nishiyama, M, Horst, R, Herrmann, T, Vetsch, M, Bettendorff, P, Ignatov, O, Grutter, M, Wuthrich, K, Glockshuber, R, Capitani, G.
登録日2005-04-15
公開日2005-06-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD.
Embo J., 24, 2005
1ZDX
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BU of 1zdx by Molmil
Solution Structure of the type 1 pilus assembly platform FimD(25-125)
分子名称: Outer membrane usher protein fimD
著者Nishiyama, M, Horst, R, Herrmann, T, Vetsch, M, Bettendorff, P, Ignatov, O, Grutter, M, Wuthrich, K, Glockshuber, R, Capitani, G.
登録日2005-04-15
公開日2005-06-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD.
Embo J., 24, 2005
1ZE3
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BU of 1ze3 by Molmil
Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH
分子名称: 1,2-ETHANEDIOL, Chaperone protein fimC, FimH protein, ...
著者Nishiyama, M, Horst, R, Eidam, O, Herrmann, T, Ignatov, O, Vetsch, M, Bettendorff, P, Jelesarov, I, Grutter, M.G, Wuthrich, K, Glockshuber, R, Capitani, G.
登録日2005-04-17
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD.
Embo J., 24, 2005
3AUJ
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BU of 3auj by Molmil
Structure of diol dehydratase complexed with glycerol
分子名称: CALCIUM ION, COBALAMIN, Diol dehydrase alpha subunit, ...
著者Yamanishi, M, Kinoshita, K, Fukuoka, M, Shibata, T, Tobimatsu, T, Toraya, T.
登録日2011-02-07
公開日2012-02-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Redesign of coenzyme B(12) dependent diol dehydratase to be resistant to the mechanism-based inactivation by glycerol and act on longer chain 1,2-diols
Febs J., 279, 2012
7DVU
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BU of 7dvu by Molmil
Crystal structure of heme sensor protein PefR in complex with heme and cyanide
分子名称: CYANIDE ION, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
著者Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
登録日2021-01-15
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021
7DVT
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BU of 7dvt by Molmil
Crystal structure of heme sensor protein PefR in complex with heme and carbon monoxide
分子名称: CARBON MONOXIDE, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
著者Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
登録日2021-01-15
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021
7DVR
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BU of 7dvr by Molmil
Crystal structure of heme sensor protein PefR from Streptococcus agalactiae in complex with heme
分子名称: COBALT (II) ION, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
著者Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
登録日2021-01-15
公開日2021-09-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021
7DVV
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BU of 7dvv by Molmil
Heme sensor protein PefR from Streptococcus agalactiae bound to operator DNA (28-mer)
分子名称: DNA (28-MER), HTH marR-type domain-containing protein
著者Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
登録日2021-01-15
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021
1IWP
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BU of 1iwp by Molmil
Glycerol Dehydratase-cyanocobalamin Complex of Klebsiella pneumoniae
分子名称: COBALAMIN, Glycerol Dehydratase Alpha subunit, Glycerol Dehydratase Beta subunit, ...
著者Yamanishi, M, Yunoki, M, Tobimatsu, T, Toraya, T.
登録日2002-05-28
公開日2002-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol.
Eur.J.Biochem., 269, 2002
1A0F
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BU of 1a0f by Molmil
CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID
分子名称: GLUTATHIONE S-TRANSFERASE, GLUTATHIONE SULFONIC ACID
著者Nishida, M, Harada, S, Noguchi, S, Inoue, H, Takahashi, K, Satow, Y.
登録日1997-11-29
公開日1999-01-13
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Three-dimensional structure of Escherichia coli glutathione S-transferase complexed with glutathione sulfonate: catalytic roles of Cys10 and His106.
J.Mol.Biol., 281, 1998
2QKS
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BU of 2qks by Molmil
Crystal structure of a Kir3.1-prokaryotic Kir channel chimera
分子名称: Kir3.1-prokaryotic Kir channel chimera, POTASSIUM ION, nonyl beta-D-glucopyranoside
著者Nishida, M, MacKinnon, R.
登録日2007-07-11
公開日2007-08-28
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a Kir3.1-prokaryotic Kir channel chimera.
Embo J., 26, 2007
5WX8
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BU of 5wx8 by Molmil
Human herpesvirus 6A immediate early protein 2 C-terminal domain
分子名称: Immediate-early protein 2
著者Nishimura, M, Wang, J, Wakata, A, Sakamoto, K, Mori, Y.
登録日2017-01-06
公開日2017-08-02
最終更新日2017-12-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the DNA-Binding Domain of Human Herpesvirus 6A Immediate Early Protein 2.
J. Virol., 91, 2017
1GCP
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BU of 1gcp by Molmil
CRYSTAL STRUCTURE OF VAV SH3 DOMAIN
分子名称: VAV PROTO-ONCOGENE
著者Nishida, M, Nagata, K, Hachimori, Y, Ogura, K, Inagaki, F.
登録日2000-08-08
公開日2001-08-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J., 20, 2001
1GCQ
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BU of 1gcq by Molmil
CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 DOMAINS
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2, VAV PROTO-ONCOGENE
著者Nishida, M, Nagata, K, Hachimori, Y, Ogura, K, Inagaki, F.
登録日2000-08-08
公開日2001-08-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J., 20, 2001
1N9P
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BU of 1n9p by Molmil
Crystal Structure of the Cytoplasmic Domain of G-protein Activated Inward Rectifier Potassium Channel 1
分子名称: G protein-activated inward rectifier potassium channel 1
著者Nishida, M, MacKinnon, R.
登録日2002-11-26
公開日2003-01-07
最終更新日2017-08-02
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis of Inward Rectification: Cytoplasmic Pore of the G Protein-Gated Inward Rectifier GIRK1 at 1.8 A Resolution
Cell(Cambridge,Mass.), 111, 2002
7Y00
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BU of 7y00 by Molmil
Cryo-EM structure of the nucleosome containing 169 base-pair DNA with a p53 target sequence
分子名称: DNA (169-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-19
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (3.96 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
7XZY
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BU of 7xzy by Molmil
Cryo-EM structure of the nucleosome containing 193 base-pair DNA with a p53 target sequence
分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-19
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (3.97 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
7XZZ
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BU of 7xzz by Molmil
Cryo-EM structure of the nucleosome in complex with p53
分子名称: Cellular tumor antigen p53, DNA (169-MER), Histone H2A type 1-B/E, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-12
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (4.07 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
7XZX
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BU of 7xzx by Molmil
Cryo-EM structure of the nucleosome in complex with p53 DNA-binding domain
分子名称: Cellular tumor antigen p53, DNA (193-MER), Histone H2A type 1-B/E, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-12
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (4.53 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
3VKW
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BU of 3vkw by Molmil
Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus
分子名称: Replicase large subunit, SULFATE ION
著者Nishikiori, M, Sugiyama, S, Xiang, H, Niiyama, M, Ishibashi, K, Inoue, T, Ishikawa, M, Matsumura, H, Katoh, E.
登録日2011-11-22
公開日2012-07-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the superfamily 1 helicase from tomato mosaic virus
J.Virol., 86, 2012
6LTG
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BU of 6ltg by Molmil
Crystal structure of the Fab fragment of murine monoclonal antibody OHV-3 against Human herpesvirus 6B
分子名称: MAGNESIUM ION, antibody Fab fragment H-chain, antibody Fab fragment L-chain
著者Nishimura, M, Novita, B.D, Kato, T, Tjan, L.H, Wang, B, Wakata, A, Poetranto, A.L, Kawabata, A, Tang, H, Aoshi, T, Mori, Y.
登録日2020-01-22
公開日2020-06-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134.
Plos Pathog., 16, 2020
6LKT
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BU of 6lkt by Molmil
Crystal structure of the Fab fragment of murine monoclonal antibody KH-1 against Human herpesvirus 6B
分子名称: antibody Fab Fragment L-chain, antibody Fab fragment H chain
著者Nishimura, M, Novita, B.D, Kato, T, Tjan, L.H, Wang, B, Wakata, A, Poetranto, A.L, Kawabata, A, Tang, H, Aoshi, T, Mori, Y.
登録日2019-12-20
公開日2020-06-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for the interaction of human herpesvirus 6B tetrameric glycoprotein complex with the cellular receptor, human CD134.
Plos Pathog., 16, 2020

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