Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3CJZ
DownloadVisualize
BU of 3cjz by Molmil
Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m22G:A pairs
分子名称: RNA (5'-R(*GP*GP*AP*CP*GP*(M2G)P*AP*CP*GP*UP*CP*CP*U)-3')
著者Pallan, P.S, Kreutz, C, Bosio, S, Micura, R, Egli, M.
登録日2008-03-14
公開日2008-10-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m2 2G:A pairs.
Rna, 14, 2008
5LWJ
DownloadVisualize
BU of 5lwj by Molmil
Solution NMR structure of the GTP binding Class II RNA aptamer-ligand-complex containing a protonated adenine nucleotide with a highly shifted pKa.
分子名称: GTP Class II RNA (34-MER), GUANOSINE-5'-TRIPHOSPHATE
著者Wolter, A.C, Weickhmann, A.K, Nasiri, A.H, Hantke, K, Ohlenschlaeger, O, Wunderlich, C.H, Kreutz, C, Duchardt-Ferner, E, Woehnert, J.
登録日2016-09-17
公開日2016-12-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A Stably Protonated Adenine Nucleotide with a Highly Shifted pKa Value Stabilizes the Tertiary Structure of a GTP-Binding RNA Aptamer.
Angew. Chem. Int. Ed. Engl., 56, 2017
8PXS
DownloadVisualize
BU of 8pxs by Molmil
Short RNA binding to peptide amyloids
分子名称: RNA (5'-R(P*GP*UP*CP*A)-3'), VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE
著者Rout, S.K, Cadalbert, R, Schroder, N, Wiegand, T, Zehnder, J, Gampp, O, Guntert, P, Kringler, D, Kreutz, C, Knorlein, A, Hall, J, Greenwald, J, Riek, R.
登録日2023-07-24
公開日2023-10-18
実験手法SOLID-STATE NMR
主引用文献An Analysis of Nucleotide-Amyloid Interactions Reveals Selective Binding to Codon-Sized RNA.
J.Am.Chem.Soc., 145, 2023
5NPA
DownloadVisualize
BU of 5npa by Molmil
Solution structure of Drosophila melanogaster Loquacious dsRBD2
分子名称: Loquacious
著者Tants, J.-N, Fesser, S, Kern, T, Stehle, R, Geerlof, A, Wunderlich, C, Boettcher, R, Kunzelmann, S, Lange, O, Kreutz, C, Foerstemann, K, Sattler, M.
登録日2017-04-16
公開日2017-10-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Molecular basis for asymmetry sensing of siRNAs by the Drosophila Loqs-PD/Dcr-2 complex in RNA interference.
Nucleic Acids Res., 45, 2017
5NPG
DownloadVisualize
BU of 5npg by Molmil
Solution structure of Drosophila melanogaster Loquacious dsRBD1
分子名称: Loquacious, isoform F
著者Tants, J.-N, Fesser, S, Kern, T, Stehle, R, Geerlof, A, Wunderlich, C, Hartlmuller, C, Boettcher, R, Kunzelmann, S, Lange, O, Kreutz, C, Foerstemann, K, Sattler, M.
登録日2017-04-16
公開日2017-10-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Molecular basis for asymmetry sensing of siRNAs by the Drosophila Loqs-PD/Dcr-2 complex in RNA interference.
Nucleic Acids Res., 45, 2017
7QP2
DownloadVisualize
BU of 7qp2 by Molmil
1-deazaguanosine modified-RNA Sarcin Ricin Loop
分子名称: GLYCEROL, RNA (27-MER)
著者Ennifar, E, Micura, R, Bereiter, R, Renard, E, Kreutz, C.
登録日2021-12-30
公開日2022-07-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献1-Deazaguanosine-Modified RNA: The Missing Piece for Functional RNA Atomic Mutagenesis.
J.Am.Chem.Soc., 144, 2022
2H1M
DownloadVisualize
BU of 2h1m by Molmil
Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs
分子名称: 5'-R(*GP*CP*AP*(XUG)P*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', SULFATE ION
著者Serganov, A.A.
登録日2006-05-16
公開日2006-07-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Synthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAs.
J.Am.Chem.Soc., 128, 2006
6GZK
DownloadVisualize
BU of 6gzk by Molmil
Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA
分子名称: 5-carboxy methylrhodamine, TMR3 (48-MER)
著者Duchardt-Ferner, E, Ohlenschlager, O, Kreutz, C.R, Wohnert, J.
登録日2018-07-04
公開日2019-07-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of an RNA aptamer in complex with the fluorophore tetramethylrhodamine.
Nucleic Acids Res., 48, 2020
6GZR
DownloadVisualize
BU of 6gzr by Molmil
Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA
分子名称: 5-carboxy methylrhodamine, tetramethylrhodamine aptamer
著者Duchardt-Ferner, E, Ohlenschlager, O, Kreutz, C.R, Wohnert, J.
登録日2018-07-05
公開日2019-07-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of an RNA aptamer in complex with the fluorophore tetramethylrhodamine.
Nucleic Acids Res., 48, 2020
5DUN
DownloadVisualize
BU of 5dun by Molmil
The crystal structure of OMe substituted twister ribozyme
分子名称: MAGNESIUM ION, POTASSIUM ION, RNA (54-MER)
著者Ren, A, Patel, D.J, Micura, R, Rajashankar, K.R.
登録日2015-09-19
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.
Angew.Chem.Int.Ed.Engl., 54, 2015
5K7C
DownloadVisualize
BU of 5k7c by Molmil
The native structure of native pistol ribozyme
分子名称: DNA/RNA 11-MER, MAGNESIUM ION, RNA 47-MER
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7D
DownloadVisualize
BU of 5k7d by Molmil
The structure of native pistol ribozyme, bound to Iridium
分子名称: DNA/RNA 11-MER, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
4Y27
DownloadVisualize
BU of 4y27 by Molmil
E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662
分子名称: 27-mer 23S Sarcin-Ricil Loop
著者Ennifar, E, Micura, R, Fluer, S.
登録日2015-02-09
公開日2015-11-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (0.998 Å)
主引用文献Role of a ribosomal RNA phosphate oxygen during the EF-G-triggered GTP hydrolysis.
Proc.Natl.Acad.Sci.USA, 112, 2015
5K7E
DownloadVisualize
BU of 5k7e by Molmil
The structure of pistol ribozyme, soaked with Mn2+
分子名称: DNA/RNA 11-MER, MANGANESE (II) ION, RNA 47-MER
著者Ren, A, Patel, D.
登録日2016-05-26
公開日2016-07-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.27 Å)
主引用文献Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
6ZYB
DownloadVisualize
BU of 6zyb by Molmil
Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification
分子名称: Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification
著者Ennifar, E.
登録日2020-07-31
公開日2020-12-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献2'- O -Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy.
Chem Sci, 11, 2020
6ZXZ
DownloadVisualize
BU of 6zxz by Molmil
Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification
分子名称: POTASSIUM ION, SODIUM ION, Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification
著者Ennifar, E.
登録日2020-07-30
公開日2020-12-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献2'- O -Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy.
Chem Sci, 11, 2020
3S7C
DownloadVisualize
BU of 3s7c by Molmil
Crystal structure of a 2'-azido-uridine-modified RNA
分子名称: Ecoli 23 S rRNA Sarcin Ricin loop
著者Ennifar, E, Micura, R.
登録日2011-05-26
公開日2012-04-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献2'-Azido RNA, a Versatile Tool for Chemical Biology: Synthesis, X-ray Structure, siRNA Applications, Click Labeling.
Acs Chem.Biol., 7, 2012
3S8U
DownloadVisualize
BU of 3s8u by Molmil
Crystal structure of a 2-azido-adenine-modified RNA
分子名称: Ecoli 23 S rRNA Sarcin Ricin loop
著者Ennifar, E, Micura, R.
登録日2011-05-31
公開日2012-04-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献2'-Azido RNA, a Versatile Tool for Chemical Biology: Synthesis, X-ray Structure, siRNA Applications, Click Labeling.
Acs Chem.Biol., 7, 2012
7L3R
DownloadVisualize
BU of 7l3r by Molmil
23S Sarcin Ricin Loop with a 3-deazapurine A2670
分子名称: GLYCEROL, RNA (27-MER)
著者Ennifar, E, Renard, E.
登録日2020-12-18
公開日2021-05-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Impact of 3-deazapurine nucleobases on RNA properties.
Nucleic Acids Res., 49, 2021
4NLF
DownloadVisualize
BU of 4nlf by Molmil
2'-trifluoromethylthio-2'-deoxycytidine-modified SRL
分子名称: 23S ribosomal RNA Sarcin Ricin Loop, SULFATE ION
著者Ennifar, E, Micura, R, Kosutic, M.
登録日2013-11-14
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids.
J.Am.Chem.Soc., 136, 2014
4NMG
DownloadVisualize
BU of 4nmg by Molmil
2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL
分子名称: 23S ribosomal RNA Sarcin Ricin Loop
著者Ennifar, E, Micura, R, Kosutic, M.
登録日2013-11-15
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids.
J.Am.Chem.Soc., 136, 2014
4NXH
DownloadVisualize
BU of 4nxh by Molmil
2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop
分子名称: 23S ribosomal RNA Sarcin Ricin Loop, GLYCEROL, SULFATE ION
著者Ennifar, E, Micura, R, Kosutic, M.
登録日2013-12-09
公開日2014-12-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.158 Å)
主引用文献Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids.
J.Am.Chem.Soc., 136, 2014
2Q1R
DownloadVisualize
BU of 2q1r by Molmil
Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.
分子名称: MAGNESIUM ION, RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3')
著者Li, F, Pallan, P.S.
登録日2007-05-25
公開日2007-10-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme.
Nucleic Acids Res., 35, 2007
2Q1O
DownloadVisualize
BU of 2q1o by Molmil
Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)
分子名称: RNA (5'-R(*CP*GP*CP*(NF2)P*AP*AP*UP*UP*GP*GP*CP*G)-3')
著者Li, F, Pallan, P.S.
登録日2007-05-25
公開日2007-10-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme.
Nucleic Acids Res., 35, 2007
6HAG
DownloadVisualize
BU of 6hag by Molmil
The structure of the SAM/SAH-binding riboswitch.
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SAM Riboswitch
著者Weickhmann, A.K.
登録日2018-08-07
公開日2019-01-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The structure of the SAM/SAH-binding riboswitch.
Nucleic Acids Res., 47, 2019

 

12>

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon