2ZO6
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![BU of 2zo6 by Molmil](/molmil-images/mine/2zo6) | Crystal Structure of Kusabira-Cyan (KCY), a Cyan-Emitting GFP-Like Protein | 分子名称: | CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) | 著者 | Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2008-05-06 | 公開日 | 2009-05-12 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry, 48, 2009
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2ZO7
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![BU of 2zo7 by Molmil](/molmil-images/mine/2zo7) | Crystal Structure of a Kusabira-Cyan Mutant (KCY-R1), a Cyan/Green-Emitting GFP-Like Protein | 分子名称: | CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) | 著者 | Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2008-05-06 | 公開日 | 2009-05-12 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry, 48, 2009
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2ZMU
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![BU of 2zmu by Molmil](/molmil-images/mine/2zmu) | Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 9.1 | 分子名称: | Fluorescent protein | 著者 | Kikuchi, A, Fukumura, E, Karasawa, S, Mizuno, H, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2008-04-21 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange Biochemistry, 47, 2008
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2ZMW
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![BU of 2zmw by Molmil](/molmil-images/mine/2zmw) | Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 6.0 | 分子名称: | Fluorescent protein | 著者 | Kikuchi, A, Fukumura, E, Karasawa, S, Mizuno, H, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2008-04-21 | 公開日 | 2008-10-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange Biochemistry, 47, 2008
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1GCU
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![BU of 1gcu by Molmil](/molmil-images/mine/1gcu) | |
7XI9
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![BU of 7xi9 by Molmil](/molmil-images/mine/7xi9) | Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-ordered form) | 分子名称: | DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ... | 著者 | Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K. | 登録日 | 2022-04-12 | 公開日 | 2022-11-30 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (2.52 Å) | 主引用文献 | Structural basis for activation of DNMT1. Nat Commun, 13, 2022
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7XIB
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![BU of 7xib by Molmil](/molmil-images/mine/7xib) | Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-disordered form) | 分子名称: | DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ... | 著者 | Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K. | 登録日 | 2022-04-12 | 公開日 | 2022-11-30 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (2.23 Å) | 主引用文献 | Structural basis for activation of DNMT1. Nat Commun, 13, 2022
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2Z6Z
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![BU of 2z6z by Molmil](/molmil-images/mine/2z6z) | Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state | 分子名称: | Fluorescent protein Dronpa | 著者 | Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A. | 登録日 | 2007-08-09 | 公開日 | 2008-07-22 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Light-dependent regulation of structural flexibility in a photochromic fluorescent protein. Proc.Natl.Acad.Sci.Usa, 105, 2008
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2Z1O
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![BU of 2z1o by Molmil](/molmil-images/mine/2z1o) | Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state | 分子名称: | Fluorescent protein Dronpa | 著者 | Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A. | 登録日 | 2007-05-10 | 公開日 | 2008-05-13 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Light-dependent regulation of structural flexibility in a photochromic fluorescent protein Proc.Natl.Acad.Sci.Usa, 105, 2008
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2Z6X
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![BU of 2z6x by Molmil](/molmil-images/mine/2z6x) | Crystal structure of 22G, the wild-type protein of the photoswitchable GFP-like protein Dronpa | 分子名称: | photochromic protein Dronpa | 著者 | Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A. | 登録日 | 2007-08-09 | 公開日 | 2008-07-22 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Light-dependent regulation of structural flexibility in a photochromic fluorescent protein. Proc.Natl.Acad.Sci.Usa, 105, 2008
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2Z6Y
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![BU of 2z6y by Molmil](/molmil-images/mine/2z6y) | Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state | 分子名称: | Fluorescent protein Dronpa | 著者 | Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A. | 登録日 | 2007-08-09 | 公開日 | 2008-07-22 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Light-dependent regulation of structural flexibility in a photochromic fluorescent protein. Proc.Natl.Acad.Sci.Usa, 105, 2008
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7C26
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![BU of 7c26 by Molmil](/molmil-images/mine/7c26) | Glycosidase Wild Type at pH4.5 | 分子名称: | AMMONIUM ION, CITRIC ACID, GLYCEROL, ... | 著者 | Tagami, T, Kikuchi, A, Okuyama, M, Kimura, A. | 登録日 | 2020-05-07 | 公開日 | 2021-05-12 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.803 Å) | 主引用文献 | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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7C27
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![BU of 7c27 by Molmil](/molmil-images/mine/7c27) | Glycosidase F290Y at pH4.5 | 分子名称: | AMMONIUM ION, CITRIC ACID, GLYCEROL, ... | 著者 | Tagami, T, Kikuchi, A, Okuyama, M, Kimura, A. | 登録日 | 2020-05-07 | 公開日 | 2021-05-12 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.91 Å) | 主引用文献 | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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7C24
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![BU of 7c24 by Molmil](/molmil-images/mine/7c24) | Glycosidase F290Y at pH8.0 | 分子名称: | AMMONIUM ION, GLYCEROL, Isomaltose glucohydrolase | 著者 | Tagami, T, Kikuchi, A, Okuyama, M, Kimura, A. | 登録日 | 2020-05-07 | 公開日 | 2021-05-12 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.71 Å) | 主引用文献 | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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7C25
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![BU of 7c25 by Molmil](/molmil-images/mine/7c25) | Glycosidase Wild Type at pH8.0 | 分子名称: | AMMONIUM ION, CITRIC ACID, GLYCEROL, ... | 著者 | Tagami, T, Kikuchi, A, Okuyama, M, Kimura, A. | 登録日 | 2020-05-07 | 公開日 | 2021-05-12 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.505 Å) | 主引用文献 | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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1INZ
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![BU of 1inz by Molmil](/molmil-images/mine/1inz) | SOLUTION STRUCTURE OF THE EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN OF HUMAN EPSIN | 分子名称: | EPS15-INTERACTING PROTEIN(EPSIN) | 著者 | Koshiba, S, Kigawa, T, Kikuchi, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2000-12-05 | 公開日 | 2001-05-09 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the epsin N-terminal homology (ENTH) domain of human epsin J.STRUCT.FUNCT.GENOM., 2, 2001
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1IQ3
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![BU of 1iq3 by Molmil](/molmil-images/mine/1iq3) | SOLUTION STRUCTURE OF THE EPS15 HOMOLOGY DOMAIN OF A HUMAN POB1 | 分子名称: | CALCIUM ION, RALBP1-INTERACTING PROTEIN (PARTNER OF RALBP1) | 著者 | Koshiba, S, Kigawa, T, Iwahara, J, Kikuchi, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2001-06-06 | 公開日 | 2001-06-27 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1). FEBS Lett., 442, 1999
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1WSP
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![BU of 1wsp by Molmil](/molmil-images/mine/1wsp) | Crystal structure of axin dix domain | 分子名称: | Axin 1 protein, BENZOIC ACID, MERCURY (II) ION | 著者 | Shibata, N, Hanamura, T, Yamamoto, R, Ueda, Y, Yamamoto, H, Kikuchi, A, Higuchi, Y. | 登録日 | 2004-11-08 | 公開日 | 2006-02-14 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Crystal structure of axin dix domain to be published
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1EF5
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![BU of 1ef5 by Molmil](/molmil-images/mine/1ef5) | SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF RGL | 分子名称: | RGL | 著者 | Kigawa, T, Endo, M, Ito, Y, Shirouzu, M, Kikuchi, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2000-02-07 | 公開日 | 2000-02-23 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the Ras-binding domain of RGL. FEBS Lett., 441, 1998
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8YV8
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![BU of 8yv8 by Molmil](/molmil-images/mine/8yv8) | Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence. | 分子名称: | Cell division cycle-associated protein 7, DNA (132-MER), Histone H2A type 1-B/E, ... | 著者 | Kikuchi, A, Shikimachi, R, Nishiyama, A, Funabiki, H, Arita, K. | 登録日 | 2024-03-28 | 公開日 | 2024-07-31 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | CDCA7 is a hemimethylated DNA adaptor for the nucleosome remodeler HELLS To Be Published
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5XFM
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![BU of 5xfm by Molmil](/molmil-images/mine/5xfm) | Crystal structure of beta-arabinopyranosidase | 分子名称: | Alpha-glucosidase, CALCIUM ION | 著者 | Kato, K, Okuyama, M, Yao, M. | 登録日 | 2017-04-10 | 公開日 | 2018-02-28 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | A novel glycoside hydrolase family 97 enzyme: Bifunctional beta-l-arabinopyranosidase/ alpha-galactosidase from Bacteroides thetaiotaomicron. Biochimie, 142, 2017
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5E1Q
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![BU of 5e1q by Molmil](/molmil-images/mine/5e1q) | Mutant (D415G) GH97 alpha-galactosidase in complex with Gal-Lac | 分子名称: | CALCIUM ION, GLYCEROL, Retaining alpha-galactosidase, ... | 著者 | Matsunaga, K, Yamashita, K, Tagami, T, Yao, M, Okuyama, M, Kimura, A. | 登録日 | 2015-09-30 | 公開日 | 2016-10-05 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.943 Å) | 主引用文献 | Efficient synthesis of alpha-galactosyl oligosaccharides using a mutant Bacteroides thetaiotaomicron retaining alpha-galactosidase (BtGH97b). FEBS J., 284, 2017
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2FK5
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![BU of 2fk5 by Molmil](/molmil-images/mine/2fk5) | Crystal structure of l-fuculose-1-phosphate aldolase from Thermus thermophilus HB8 | 分子名称: | CHLORIDE ION, SULFATE ION, fuculose-1-phosphate aldolase | 著者 | Jeyakanthan, J, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2006-01-04 | 公開日 | 2007-01-04 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Purification, crystallization and preliminary X-ray crystallographic study of the L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8 Acta Crystallogr.,Sect.F, 61, 2005
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2FLF
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![BU of 2flf by Molmil](/molmil-images/mine/2flf) | Crystal structure of l-fuculose-1-phosphate aldolase from Thermus Thermophilus HB8 | 分子名称: | fuculose-1-phosphate aldolase | 著者 | Jeyakanthan, J, Yokoyama, S, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2006-01-06 | 公開日 | 2007-01-09 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Purification, crystallization and preliminary X-ray crystallographic study of the L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8 Acta Crystallogr.,Sect.F, 61, 2005
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5Z3D
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![BU of 5z3d by Molmil](/molmil-images/mine/5z3d) | Glycosidase F290Y | 分子名称: | CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein | 著者 | Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A. | 登録日 | 2018-01-05 | 公開日 | 2019-05-15 | 最終更新日 | 2022-02-23 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J., 289, 2022
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