7V1V
| Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium, ligand-free form | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ... | 著者 | Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S. | 登録日 | 2021-08-06 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family. J.Biol.Chem., 297, 2021
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7V1W
| Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in complex with beta-D-arabinofuranose | 分子名称: | CALCIUM ION, Difructose dianhydride I synthase/hydrolase (alphaFFase1), beta-D-arabinofuranose | 著者 | Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S. | 登録日 | 2021-08-06 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.86 Å) | 主引用文献 | Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family. J.Biol.Chem., 297, 2021
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7V1X
| Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in complex with beta-D-fructofuranose | 分子名称: | CALCIUM ION, Difructose dianhydride I synthase/hydrolase, beta-D-fructofuranose | 著者 | Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S. | 登録日 | 2021-08-06 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.76 Å) | 主引用文献 | Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family. J.Biol.Chem., 297, 2021
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8YK2
| Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-700 | 分子名称: | Alpha-galactosidase, GLYCEROL, SODIUM ION, ... | 著者 | Kashima, T, Akama, M, Ashida, H, Fushinobu, S. | 登録日 | 2024-03-04 | 公開日 | 2024-07-10 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen J.Appl.Glyosci., 2024
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8YK3
| Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-673 | 分子名称: | 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Alpha-galactosidase, ... | 著者 | Kashima, T, Ashida, H, Fushinobu, S. | 登録日 | 2024-03-04 | 公開日 | 2024-07-10 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen J.Appl.Glyosci., 2024
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8YK1
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5H7T
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6JMS
| CJP38, a beta-1,3-glucanase and allergen of Cryptomeria japonica pollen | 分子名称: | 1,2-ETHANEDIOL, Pollen allergen CJP38 | 著者 | Takashima, T, Numata, T, Fukamizo, T, Ohnuma, T. | 登録日 | 2019-03-13 | 公開日 | 2020-05-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | CJP38, a beta-1,3-glucanase and allergen of Cryptomeria japonica pollen To Be Published
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1J3A
| Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii | 分子名称: | 50S ribosomal protein L13P | 著者 | Nakashima, T, Tanaka, M, Kazama, T, Kawamura, S, Kimura, M, Yao, M, Tanaka, I. | 登録日 | 2003-01-21 | 公開日 | 2003-02-04 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii To be Published
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1IQ4
| 5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS | 分子名称: | 50S RIBOSOMAL PROTEIN L5 | 著者 | Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I. | 登録日 | 2001-06-13 | 公開日 | 2001-06-27 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding. RNA, 7, 2001
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8IC8
| Exo-alpha-D-arabinofuranosidase from Microbacterium arabinogalactanolyticum | 分子名称: | Exo-alpha-D-arabinofuranosidase, PHOSPHATE ION | 著者 | Kashima, T, Arakawa, T, Yamada, C, Ishiwata, A, Fujita, K, Fushinobu, S. | 登録日 | 2023-02-11 | 公開日 | 2023-08-16 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.42 Å) | 主引用文献 | Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nat Commun, 14, 2023
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7WDU
| 6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with PUGNAc-6S | 分子名称: | Beta-N-acetylhexosaminidase, CALCIUM ION, [[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate | 著者 | Kashima, T, Yamada, C, Fushinobu, S, Katoh, T, Katayama, T. | 登録日 | 2021-12-22 | 公開日 | 2022-12-28 | 最終更新日 | 2023-06-14 | 実験手法 | X-RAY DIFFRACTION (2.23 Å) | 主引用文献 | A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. Nat.Chem.Biol., 19, 2023
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2Z41
| Crystal Structure Analysis of the Ski2-type RNA helicase | 分子名称: | MAGNESIUM ION, putative ski2-type helicase | 著者 | Nakashima, T, Zhang, X, Kakuta, Y, Yao, M, Tanaka, I, Kimura, M. | 登録日 | 2007-06-12 | 公開日 | 2008-04-08 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.51 Å) | 主引用文献 | Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3 Protein Sci., 17, 2008
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8IC7
| exo-beta-D-arabinofuranosidase ExoMA2 from Microbacterium arabinogalactanolyticum in complex with beta-D-arabinofuranose | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, MAGNESIUM ION, ... | 著者 | Fukushima, R, Kashima, T, Ishiwata, A, Fujita, K, Fushinobu, S. | 登録日 | 2023-02-11 | 公開日 | 2023-08-16 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nat Commun, 14, 2023
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8IC6
| exo-beta-D-arabinanase ExoMA2 from Microbacterium arabinogalactanolyticum in complex with Tris | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... | 著者 | Fukushima, R, Kashima, T, Ishiwata, A, Fujita, K, Fushinobu, S. | 登録日 | 2023-02-10 | 公開日 | 2023-08-16 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nat Commun, 14, 2023
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7WDT
| 6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with GlcNAc-6S | 分子名称: | 2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose, 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, Beta-N-acetylhexosaminidase, ... | 著者 | Yamada, C, Kashima, T, Fushinobu, S, Katoh, T, Katayama, T. | 登録日 | 2021-12-22 | 公開日 | 2022-12-28 | 最終更新日 | 2023-06-14 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. Nat.Chem.Biol., 19, 2023
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1RL2
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3WZ0
| On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis | 分子名称: | Ribonuclease P protein component 2, Ribonuclease P protein component 3 | 著者 | Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M. | 登録日 | 2014-09-11 | 公開日 | 2015-09-16 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.79 Å) | 主引用文献 | On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis. Biosci.Biotechnol.Biochem., 79, 2015
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3WYZ
| On archaeal homologs of the human RNase P protein Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis | 分子名称: | GLYCEROL, Ribonuclease P protein component 3 | 著者 | Suematsu, K, Ueda, T, Nakashima, T, Kakuta, Y, Kimura, M. | 登録日 | 2014-09-11 | 公開日 | 2015-09-16 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | 主引用文献 | On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis. Biosci.Biotechnol.Biochem., 79, 2015
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2Z7C
| Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii | 分子名称: | ARGININE, DNA/RNA-binding protein Alba | 著者 | Hada, K, Nakashima, T, Osawa, T, Shimada, H, Kakuta, Y, Kimura, M. | 登録日 | 2007-08-17 | 公開日 | 2008-08-05 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biosci.Biotechnol.Biochem., 72, 2008
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1WNU
| Structure of Archaeal Trans-Editing Protein AlaX in complex with L-serine | 分子名称: | SERINE, ZINC ION, alanyl-tRNA synthetase | 著者 | Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I. | 登録日 | 2004-08-09 | 公開日 | 2005-07-26 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Molecular basis of alanine discrimination in editing site Proc.Natl.Acad.Sci.Usa, 102, 2005
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1WXO
| Structure of Archaeal Trans-Editing Protein AlaX in complex with zinc | 分子名称: | ZINC ION, alanyl-tRNA synthetase | 著者 | Sokabe, M, Okada, A, Nakashima, T, Yao, M, Tanaka, I. | 登録日 | 2005-01-27 | 公開日 | 2005-07-26 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | Molecular basis of alanine discrimination in editing site Proc.Natl.Acad.Sci.Usa, 102, 2005
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2CZV
| Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p | 分子名称: | ACETIC ACID, Ribonuclease P protein component 2, Ribonuclease P protein component 3, ... | 著者 | Kawano, S, Kakuta, Y, Nakashima, T, Tanaka, I, Kimura, M. | 登録日 | 2005-07-19 | 公開日 | 2006-06-27 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme J.Mol.Biol., 357, 2006
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3AY8
| Glutathione S-transferase unclassified 2 from Bombyx mori | 分子名称: | GLYCEROL, Glutathione S-transferase | 著者 | Kakuta, Y, Usuda, K, Nakashima, T, Kimura, M, Aso, Y, Yamamoto, K. | 登録日 | 2011-05-02 | 公開日 | 2011-09-07 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori Biochim.Biophys.Acta, 1810, 2011
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8HHV
| endo-alpha-D-arabinanase EndoMA1 from Microbacterium arabinogalactanolyticum | 分子名称: | CALCIUM ION, GLYCEROL, SODIUM ION, ... | 著者 | Nakashima, C, Li, J, Arakawa, T, Yamada, C, Ishiwata, A, Fujita, K, Fushinobu, S. | 登録日 | 2022-11-17 | 公開日 | 2023-08-16 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nat Commun, 14, 2023
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