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3N8T
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BU of 3n8t by Molmil
Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis
分子名称: DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, alpha-amylase, ...
著者Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
登録日2010-05-28
公開日2010-10-27
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N92
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BU of 3n92 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose
分子名称: alpha-amylase, GH57 family, beta-D-glucopyranose
著者Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
登録日2010-05-28
公開日2010-10-27
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N98
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BU of 3n98 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose and additives
分子名称: 1,4-DIETHYLENE DIOXIDE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
登録日2010-05-28
公開日2010-10-27
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
5IJA
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BU of 5ija by Molmil
[NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis
分子名称: Hydrogenase-specific maturation endopeptidase
著者Kwon, S, Nishitani, Y, Watanabe, S, Miki, K.
登録日2016-03-01
公開日2016-06-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1
Proteins, 84, 2016
4QJV
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BU of 4qjv by Molmil
The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis
分子名称: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION
著者Hirata, A, Murakami, K.S.
登録日2014-06-05
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration
Nat Commun, 5, 2014
4QIW
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BU of 4qiw by Molmil
Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis
分子名称: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ...
著者Jun, S.-H, Murakami, K.S.
登録日2014-06-02
公開日2014-10-08
最終更新日2014-11-26
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.
Nat Commun, 5, 2014
6BUX
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BU of 6bux by Molmil
CRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA
分子名称: Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain, DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3'), GLYCEROL, ...
著者Maiti, A, Matsuo, H.
登録日2017-12-11
公開日2018-07-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.856 Å)
主引用文献Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA.
Nat Commun, 9, 2018
7UCJ
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BU of 7ucj by Molmil
Mammalian 80S translation initiation complex with mRNA and Harringtonine
分子名称: 18S rRNA, 28s rRNA, 40S ribosomal protein S10, ...
著者Yang, R, Arango, D, Sturgill, D, Oberdoerffer, S.
登録日2022-03-16
公開日2022-06-01
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine.
Mol.Cell, 82, 2022
7UCK
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BU of 7uck by Molmil
80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
分子名称: 18S rRNA, 28s rRNA, 40S ribosomal protein S10, ...
著者Yang, R, Arango, D, Sturgill, D, Oberdoerffer, S.
登録日2022-03-16
公開日2022-06-01
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine.
Mol.Cell, 82, 2022
6WMB
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BU of 6wmb by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 8.0)
分子名称: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G, DNA (5'-D(P*CP*C)-3'), ...
著者Maiti, A, Matsuo, H.
登録日2020-04-21
公開日2020-12-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
6WMA
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BU of 6wma by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 7.6)
分子名称: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G, CHLORIDE ION, ...
著者Maiti, A, Matsuo, H.
登録日2020-04-21
公開日2020-12-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
6WMC
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BU of 6wmc by Molmil
Crystal structure of a soluble variant of full-length human APOBEC3G (pH 9.0)
分子名称: APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE-3 LIKE 3G, DNA (5'-D(P*CP*C)-3'), ...
著者Maiti, A, Matsuo, H.
登録日2020-04-21
公開日2020-12-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.49 Å)
主引用文献Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
J.Mol.Biol., 432, 2020
5HEE
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BU of 5hee by Molmil
Crystal structure of the TK2203 protein
分子名称: GLYCEROL, Putative uncharacterized protein, TK2203 protein, ...
著者Nishitani, Y, Miki, K.
登録日2016-01-06
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase
Acta Crystallogr.,Sect.F, 72, 2016
5AUQ
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BU of 5auq by Molmil
Crystal structure of ATPase-type HypB in the nucleotide free state
分子名称: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
著者Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
登録日2015-05-27
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.525 Å)
主引用文献Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUO
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BU of 5auo by Molmil
Crystal structure of the HypAB-Ni complex (AMPPCP)
分子名称: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
著者Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
登録日2015-05-27
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUP
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BU of 5aup by Molmil
Crystal structure of the HypAB complex
分子名称: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
著者Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
登録日2015-05-27
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUN
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BU of 5aun by Molmil
Crystal structure of the HypAB-Ni complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ParA/MinD family, ...
著者Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
登録日2015-05-27
公開日2015-06-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
8EO2
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BU of 8eo2 by Molmil
Lufaxin a bifunctional inhibitor of complement and coagulation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, ...
著者Andersen, J.F, Strayer, E.C.
登録日2022-10-01
公開日2023-08-09
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism.
Blood, 141, 2023
8ENU
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BU of 8enu by Molmil
Structure of the C3bB proconvertase in complex with lufaxin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Complement C3 beta chain, Complement C3b alpha' chain, ...
著者Andersen, J.F, Lei, H.
登録日2022-09-30
公開日2023-08-09
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism.
Blood, 141, 2023
8EOK
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BU of 8eok by Molmil
Structure of the C3bB proconvertase in complex with lufaxin and factor Xa
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Activated factor Xa heavy chain, Complement C3 beta chain, ...
著者Andersen, J.F, Lei, H.
登録日2022-10-03
公開日2023-08-30
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism.
Blood, 141, 2023
3VX3
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BU of 3vx3 by Molmil
Crystal structure of [NiFe] hydrogenase maturation protein HypB from Thermococcus kodakarensis KOD1
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ...
著者Sasaki, D, Watanabe, S, Miki, K.
登録日2012-09-09
公開日2013-02-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification and Structure of a Novel Archaeal HypB for [NiFe] Hydrogenase Maturation
J.Mol.Biol., 425, 2013
5YXY
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BU of 5yxy by Molmil
Crystal structure of the HyhL-HypA complex (form I)
分子名称: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
著者Kwon, S, Watanabe, S, Nishitani, Y, Miki, K.
登録日2017-12-07
公開日2018-06-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.299 Å)
主引用文献Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YY0
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BU of 5yy0 by Molmil
Crystal structure of the HyhL-HypA complex (form II)
分子名称: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
著者Kwon, S, Watanabe, S, Nishitani, Y, Miki, K.
登録日2017-12-07
公開日2018-06-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.243 Å)
主引用文献Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5DHE
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BU of 5dhe by Molmil
Crystal structure of ChBD3 from Thermococcus kodakarensis KOD1
分子名称: Chitinase, GLYCEROL
著者Niwa, S, Hibi, M, Takeda, K, Miki, K.
登録日2015-08-30
公開日2016-02-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1
Febs Lett., 590, 2016
5DHD
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BU of 5dhd by Molmil
Crystal structure of ChBD2 from Thermococcus kodakarensis KOD1
分子名称: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, Chitinase, SULFATE ION
著者Hibi, M, Niwa, S, Takeda, K, Miki, K.
登録日2015-08-30
公開日2016-02-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1
Febs Lett., 590, 2016

 

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