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2A5W
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BU of 2a5w by Molmil
Crystal structure of the oxidized gamma-subunit of the dissimilatory sulfite reductase (DsrC) from Archaeoglobus fulgidus
分子名称: SULFATE ION, sulfite reductase, desulfoviridin-type subunit gamma (dsvC)
著者Mander, G.J, Weiss, M.S, Hedderich, R, Kahnt, J, Ermler, U, Warkentin, E.
登録日2005-07-01
公開日2005-09-06
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献X-ray structure of the gamma-subunit of a dissimilatory sulfite reductase: Fixed and flexible C-terminal arms.
Febs Lett., 579, 2005
4KPU
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BU of 4kpu by Molmil
Electron transferring flavoprotein of Acidaminococcus fermentans: Towards a mechanism of flavin-based electron bifurcation
分子名称: CHLORIDE ION, Electron transfer flavoprotein alpha subunit, Electron transfer flavoprotein alpha/beta-subunit, ...
著者Mowafy, A.M, Chowdhury, N.P, Demmer, J, Upadhyay, V, Kolzer, S, Jayamani, E, Kahnt, J, Demmer, U, Ermler, U, Buckel, W.
登録日2013-05-14
公開日2014-01-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Studies on the Mechanism of Electron Bifurcation Catalyzed by Electron Transferring Flavoprotein (Etf) and Butyryl-CoA Dehydrogenase (Bcd) of Acidaminococcus fermentans.
J.Biol.Chem., 289, 2014
4L2I
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BU of 4l2i by Molmil
Electron transferring flavoprotein of Acidaminococcus fermentans: Towards a mechanism of flavin-based electron bifurcation
分子名称: CHLORIDE ION, Electron transfer flavoprotein alpha subunit, Electron transfer flavoprotein alpha/beta-subunit, ...
著者Mowafy, A.M, Chowdhury, N.P, Demmer, J, Upadhyay, V, Kolzer, S, Jayamani, E, Kahnt, J, Demmer, U, Ermler, U, Buckel, W.
登録日2013-06-04
公開日2014-01-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Studies on the Mechanism of Electron Bifurcation Catalyzed by Electron Transferring Flavoprotein (Etf) and Butyryl-CoA Dehydrogenase (Bcd) of Acidaminococcus fermentans.
J.Biol.Chem., 289, 2014
4L1F
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BU of 4l1f by Molmil
Electron transferring flavoprotein of Acidaminococcus fermentans: Towards a mechanism of flavin-based electron bifurcation
分子名称: 1,3-PROPANDIOL, Acyl-CoA dehydrogenase domain protein, COENZYME A PERSULFIDE, ...
著者Mowafy, A.M, Chowdhury, N.P, Demmer, J, Upadhyay, V, Kolzer, S, Jayamani, E, Kahnt, J, Demmer, U, Ermler, U, Buckel, W.
登録日2013-06-03
公開日2014-01-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Studies on the Mechanism of Electron Bifurcation Catalyzed by Electron Transferring Flavoprotein (Etf) and Butyryl-CoA Dehydrogenase (Bcd) of Acidaminococcus fermentans.
J.Biol.Chem., 289, 2014
6HUZ
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BU of 6huz by Molmil
HmdII from Desulfurobacterium thermolithotrophum reconstituted with Fe-guanylylpyridinol (FeGP) cofactor and co-crystallized with methenyl-tetrahydrofolate form B
分子名称: 1,2-ETHANEDIOL, 5,10-Methenyltetrahydrofolate, Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein, ...
著者Watanabe, T, Wagner, T, Huang, G, Kahnt, J, Ataka, K, Ermler, U, Shima, S.
登録日2018-10-09
公開日2019-01-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The Bacterial [Fe]-Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates.
Angew. Chem. Int. Ed. Engl., 58, 2019
6HUY
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BU of 6huy by Molmil
HmdII from Desulfurobacterium thermolithotrophum reconstitued with Fe-guanylylpyridinol (FeGP) cofactor and co-crystallized with methenyl-tetrahydrofolate form A
分子名称: 5,10-Methenyltetrahydrofolate, Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein, DIMETHYL SULFOXIDE, ...
著者Watanabe, T, Wagner, T, Huang, G, Kahnt, J, Ataka, K, Ermler, U, Shima, S.
登録日2018-10-09
公開日2019-01-09
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The Bacterial [Fe]-Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates.
Angew. Chem. Int. Ed. Engl., 58, 2019
6HUX
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BU of 6hux by Molmil
HmdII from Methanocaldococcus jannaschii reconstitued with Fe-guanylylpyridinol (FeGP) cofactor and co-crystallized with methenyl-tetrahydromethanopterin at 2.5 A resolution
分子名称: 1,2-ETHANEDIOL, 1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol, ACETATE ION, ...
著者Watanabe, T, Wagner, T, Huang, G, Kahnt, J, Ataka, K, Ermler, U, Shima, S.
登録日2018-10-09
公開日2019-01-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Bacterial [Fe]-Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates.
Angew. Chem. Int. Ed. Engl., 58, 2019
6EQO
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BU of 6eqo by Molmil
Tri-functional propionyl-CoA synthase of Erythrobacter sp. NAP1 with bound NADP+ and phosphomethylphosphonic acid adenylate ester
分子名称: Acetyl-coenzyme A synthetase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Zarzycki, J, Bernhardsgruetter, I, Voegeli, B, Wagner, T, Engilberge, S, Girard, E, Shima, S, Erb, T.J.
登録日2017-10-13
公開日2018-10-24
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite.
Nat. Chem. Biol., 14, 2018
7NB6
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BU of 7nb6 by Molmil
Structure of the autoinducer-2 exporter TqsA from E. coli
分子名称: AI-2 transport protein TqsA
著者Khera, R, Xie, H, Michel, H.
登録日2021-01-25
公開日2022-05-11
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structures of pentameric autoinducer-2 exporter from Escherichia coli reveal its transport mechanism.
Embo J., 41, 2022
3WVA
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BU of 3wva by Molmil
SeMet-labelled HcgF from Methanocaldococcus jannaschii
分子名称: UPF0254 protein MJ1251
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
7OT9
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BU of 7ot9 by Molmil
Structure of the AI-2 exporter family protein YdiK from E. coli
分子名称: AI-2E member YdiK
著者Khera, R, Xie, H, Michel, H.
登録日2021-06-09
公開日2022-05-11
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structures of pentameric autoinducer-2 exporter from Escherichia coli reveal its transport mechanism.
Embo J., 41, 2022
8QMT
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BU of 8qmt by Molmil
Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+, succinic semialdehyde
分子名称: 4-oxobutanoic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad
著者He, H, Zarzycki, J, Erb, T.J.
登録日2023-09-25
公開日2024-10-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies.
Nat Commun, 15, 2024
8QMR
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BU of 8qmr by Molmil
Succinic semialdehyde dehydrogenase from E. coli with bound NAD+ and succinic semialdehyde
分子名称: 4-oxobutanoic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad
著者He, H, Zarzycki, J, Erb, T.J.
登録日2023-09-25
公開日2024-10-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies.
Nat Commun, 15, 2024
8QMQ
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BU of 8qmq by Molmil
Succinic semialdehyde dehydrogenase from E. coli with bound NAD+
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad
著者He, H, Zarzycki, J, Erb, T.J.
登録日2023-09-25
公開日2024-10-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies.
Nat Commun, 15, 2024
8QMS
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BU of 8qms by Molmil
Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad
著者He, H, Zarzycki, J, Erb, T.J.
登録日2023-09-25
公開日2024-10-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies.
Nat Commun, 15, 2024
8Q3V
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BU of 8q3v by Molmil
Cryo-EM structure of the methanogenic Na+ translocating N5-methyl-H4MPT:CoM methyltransferase complex
分子名称: MAGNESIUM ION, SODIUM ION, Tetrahydromethanopterin S-methyltransferase subunit A 1, ...
著者Aziz, I, Vonck, J, Ermler, U.
登録日2023-08-04
公開日2024-07-10
実験手法ELECTRON MICROSCOPY (2.08 Å)
主引用文献Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis.
Proc.Natl.Acad.Sci.USA, 121, 2024
8Q54
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BU of 8q54 by Molmil
N5-methyl-H4MPT:CoM methyltransferase -coenzyme M complex + CoM
分子名称: 1-THIOETHANESULFONIC ACID, MAGNESIUM ION, SODIUM ION, ...
著者Aziz, I, Vonck, J, Ermler, U.
登録日2023-08-08
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (2.39 Å)
主引用文献Cryo-EM structure of the methanogenic Na+ translocating N5-methyl-H4MPT:CoM methyltransferase complex
To Be Published
5N1Q
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BU of 5n1q by Molmil
METHYL-COENZYME M REDUCTASE III FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS AT 1.9 A RESOLUTION
分子名称: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
著者Wagner, T, Wegner, C.E, Ermler, U, Shima, S.
登録日2017-02-06
公開日2017-06-14
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales.
J.Bacteriol., 199, 2017
5N2A
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BU of 5n2a by Molmil
METHYL-COENZYME M REDUCTASE III FROM METHANOTORRIS FORMICICUS TRIGONAL FORM
分子名称: 1-THIOETHANESULFONIC ACID, BROMIDE ION, Coenzyme B, ...
著者Wagner, T, Wegner, C.E, Ermler, U, Shima, S.
登録日2017-02-07
公開日2017-06-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales.
J.Bacteriol., 199, 2017
5N28
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BU of 5n28 by Molmil
METHYL-COENZYME M REDUCTASE III FROM METHANOTORRIS FORMICICUS MONOCLINIC FORM
分子名称: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
著者Wagner, T, Wegner, C.E, Ermler, U, Shima, S.
登録日2017-02-07
公開日2017-06-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales.
J.Bacteriol., 199, 2017
7Q03
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BU of 7q03 by Molmil
Ketol-acid reductoisomerase from Methanothermococcus thermolithotrophicus in the close state with NADP and Mg2+
分子名称: 1,2-ETHANEDIOL, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, GLYCEROL, ...
著者Lemaire, O.N, Mueller, M, Wagner, T.
登録日2021-10-14
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Rearrangements of a Dodecameric Ketol-Acid Reductoisomerase Isolated from a Marine Thermophilic Methanogen.
Biomolecules, 11, 2021
7Q07
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BU of 7q07 by Molmil
Ketol-acid reductoisomerase from Methanothermococcus thermolithotrophicus in the open state with NADP and tartrate
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Ketol-Acid Reductoisomerase from Methanothermococcus thermolithotrophicus, ...
著者Lemaire, O.N, Mueller, M, Wagner, T.
登録日2021-10-14
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Rearrangements of a Dodecameric Ketol-Acid Reductoisomerase Isolated from a Marine Thermophilic Methanogen.
Biomolecules, 11, 2021
4YTE
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BU of 4yte by Molmil
N-terminal domain of HmdIII from Methanocaldococcus jannaschii
分子名称: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ0715
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2016-03-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献N-terminal domain of HmdIII from Methanocaldococcus jannaschii
to be published
5A8R
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BU of 5a8r by Molmil
METHYL-COENZYME M REDUCTASE II FROM METHANOTHERMOBACTER MARBURGENSIS AT 2.15 A RESOLUTION
分子名称: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
著者Wagner, T, Ermler, U.
登録日2015-07-16
公開日2016-08-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016
5A0Y
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BU of 5a0y by Molmil
METHYL-COENZYME M REDUCTASE FROM METHANOTHERMOBACTER MARBURGENSIS AT 1.1 A RESOLUTION
分子名称: 1-THIOETHANESULFONIC ACID, CHLORIDE ION, Coenzyme B, ...
著者Wagner, T, Ermler, U.
登録日2015-04-24
公開日2016-05-11
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016

 

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