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1OQU
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BU of 1oqu by Molmil
A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes
分子名称: ACETATE ION, FE (III) ION, OXYGEN MOLECULE, ...
著者Hogbom, M, Nordlund, P.
登録日2003-03-11
公開日2004-04-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A protein carboxylate coordinated oxo-centered tri-nuclear iron complex with possible implications for ferritin mineralization
Febs Lett., 567, 2004
1SYY
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BU of 1syy by Molmil
Crystal structure of the R2 subunit of ribonucleotide reductase from Chlamydia trachomatis
分子名称: FE (III) ION, LEAD (II) ION, Ribonucleoside-diphosphate reductase beta chain
著者Hogbom, M, Stenmark, P, Voevodskaya, N, McClarty, G, Graslund, A, Nordlund, P.
登録日2004-04-02
公開日2004-07-13
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The radical site in chlamydial ribonucleotide reductase defines a new R2 subclass.
Science, 305, 2004
1LP1
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BU of 1lp1 by Molmil
Protein Z in complex with an in vitro selected affibody
分子名称: Affibody binding protein Z, Immunoglobulin G binding protein A, MAGNESIUM ION, ...
著者Hogbom, M, Eklund, M, Nygren, P.A, Nordlund, P.
登録日2002-05-07
公開日2003-03-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for recognition by an in vitro evolved affibody.
Proc.Natl.Acad.Sci.USA, 100, 2003
1JPR
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BU of 1jpr by Molmil
Mn substituted Ribonucleotide reductase R2 from E. coli oxidized by nitric oxide
分子名称: MANGANESE (II) ION, MERCURY (II) ION, Protein R2 of Ribonucleotide reductase
著者Hogbom, M, Andersson, M.E, Nordlund, P.
登録日2001-08-03
公開日2001-08-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Crystal structures of oxidized dinuclear manganese centres in Mn-substituted class I ribonucleotide reductase from Escherichia coli: carboxylate shifts with implications for O2 activation and radical generation.
J.Biol.Inorg.Chem., 6, 2001
1KGN
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BU of 1kgn by Molmil
R2F from Corynebacterium Ammoniagenes in its oxidised, Fe containing, form
分子名称: FE (III) ION, Ribonucleotide reductase protein R2F
著者Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
登録日2001-11-28
公開日2001-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
1KGP
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BU of 1kgp by Molmil
R2F from Corynebacterium Ammoniagenes in its Mn substituted form
分子名称: MANGANESE (II) ION, Ribonucleotide reductase protein R2F
著者Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
登録日2001-11-28
公開日2001-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
1KGO
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BU of 1kgo by Molmil
R2F from Corynebacterium Ammoniagenes in its reduced, Fe containing, form
分子名称: FE (II) ION, Ribonucleotide reductase protein R2F
著者Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
登録日2001-11-28
公開日2001-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
1JQC
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BU of 1jqc by Molmil
Mn substituted Ribonucleotide reductase R2 from E. Coli oxidized by hydrogen peroxide and hydroxylamine
分子名称: MANGANESE (II) ION, MERCURY (II) ION, Protein R2 of ribonucleotide reductase
著者Hogbom, M, Andersson, M.E, Nordlund, P.
登録日2001-08-06
公開日2001-08-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Crystal structures of oxidized dinuclear manganese centres in Mn-substituted class I ribonucleotide reductase from Escherichia coli: carboxylate shifts with implications for O2 activation and radical generation.
J.Biol.Inorg.Chem., 6, 2001
2B43
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BU of 2b43 by Molmil
Crystal structure of the Norwalk virus RNA dependent RNA polymerase from strain Hu/NLV/Dresden174/1997/GE
分子名称: non-structural polyprotein
著者Hogbom, M, Rohayem, J, Unge, T, Jones, T.A.
登録日2005-09-22
公開日2005-10-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the Norwalk virus RNA dependent RNA polymerase from strain Hu/NLV/Dresden174/1997/GE
To be Published
2I4I
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BU of 2i4i by Molmil
Crystal Structure of human DEAD-box RNA helicase DDX3X
分子名称: ADENOSINE MONOPHOSPHATE, ATP-dependent RNA helicase DDX3X
著者Hogbom, M, Karlberg, T, Arrowsmith, C, Berglund, H, Busam, R.D, Collins, R, Edwards, A, Ehn, M, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Johansson, I, Kotenyova, T, Magnusdottir, A, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Ogg, D, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Uppenberg, J, Van Den Berg, S, Wallden, K, Weigelt, J, Welin, M, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC)
登録日2006-08-22
公開日2006-09-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of Conserved Domains 1 and 2 of the Human DEAD-box Helicase DDX3X in Complex with the Mononucleotide AMP
J.Mol.Biol., 372, 2007
2ANI
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BU of 2ani by Molmil
Crystal structure of the F127Y mutant of Ribonucleotide Reductase R2 from Chlamydia trachomatis
分子名称: FE (III) ION, LEAD (II) ION, Ribonucleoside-diphosphate reductase beta subunit
著者Hogbom, M, Stenmark, P, Nordlund, P.
登録日2005-08-11
公開日2006-07-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the high-valent FeIIIFeIV state in ribonucleotide reductase (RNR) of Chlamydia trachomatis--combined EPR, 57Fe-, 1H-ENDOR and X-ray studies.
Biochim.Biophys.Acta, 1774, 2007
1MXR
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BU of 1mxr by Molmil
High resolution structure of Ribonucleotide reductase R2 from E. coli in its oxidised (Met) form
分子名称: FE (III) ION, GLYCEROL, MERCURY (II) ION, ...
著者Andersson, M.A, Hogbom, M, Nordlund, P.
登録日2002-10-03
公開日2003-03-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Displacement of the tyrosyl radical cofactor in ribonucleotide reductase obtained by single-crystal high-field EPR and 1.4-A x-ray data.
Proc.Natl.Acad.Sci.Usa, 100, 2003
3DHZ
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BU of 3dhz by Molmil
Apo (iron free) structure of C. ammoniagenes R2 protein
分子名称: FE (II) ION, Ribonucleotide reductase subunit R2F
著者Hogbom, M, Nordlund, P.
登録日2008-06-19
公開日2008-07-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structural and mutational studies of the carboxylate cluster in Iron-free Ribonucleotide Reductase R2.
Biochemistry, 43, 2004
2G9N
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BU of 2g9n by Molmil
Structure of the DEAD domain of Human eukaryotic initiation factor 4A, eIF4A
分子名称: Eukaryotic initiation factor 4A-I
著者Hogbom, M, Ogg, D, Arrowsmith, C, Berglund, H, Collins, R, Edwards, A, Ehn, M, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Uppenberg, J, Van Den Berg, S, Weigelt, J, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC)
登録日2006-03-07
公開日2006-03-14
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Comparative Structural Analysis of Human DEAD-Box RNA Helicases.
Plos One, 5, 2010
7Z3E
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BU of 7z3e by Molmil
XFEL structure of Class Ib ribonucleotide reductase dimanganese(II) NrdF in complex with hydroquinone NrdI from Bacillus cereus
分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, MANGANESE (II) ION, Protein NrdI, ...
著者John, J, Lebrette, H, Aurelius, O, Hogbom, M.
登録日2022-03-02
公開日2022-09-21
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Redox-controlled reorganization and flavin strain within the ribonucleotide reductase R2b-NrdI complex monitored by serial femtosecond crystallography.
Elife, 11, 2022
7Z3D
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BU of 7z3d by Molmil
XFEL structure of Class Ib ribonucleotide reductase dimanganese(II) NrdF in complex with oxidized NrdI from Bacillus cereus
分子名称: FLAVIN MONONUCLEOTIDE, MANGANESE (II) ION, Protein NrdI, ...
著者John, J, Lebrette, H, Aurelius, O, Hogbom, M.
登録日2022-03-02
公開日2022-09-21
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Redox-controlled reorganization and flavin strain within the ribonucleotide reductase R2b-NrdI complex monitored by serial femtosecond crystallography.
Elife, 11, 2022
6NWR
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BU of 6nwr by Molmil
Thioester acyl-intermediate of Apolipoprotein N-acyltransferase (Lnt)
分子名称: Apolipoprotein N-acyltransferase, DODECANE, DODECYL-BETA-D-MALTOSIDE
著者Wiseman, B, Hogbom, M.
登録日2019-02-07
公開日2020-01-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Conformational changes in Apolipoprotein N-acyltransferase (Lnt).
Sci Rep, 10, 2020
7Q21
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BU of 7q21 by Molmil
III2-IV2 respiratory supercomplex from Corynebacterium glutamicum
分子名称: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
著者Kovalova, T, Moe, A, Krol, S, Yanofsky, D.J, Bott, M, Sjostrand, D, Rubinstein, J.L, Hogbom, M, Brzezinski, P.
登録日2021-10-22
公開日2022-02-02
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献The respiratory supercomplex from C. glutamicum.
Structure, 30, 2022
3R44
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BU of 3r44 by Molmil
Mycobacterium tuberculosis fatty acyl CoA synthetase
分子名称: HISTIDINE, MALONATE ION, fatty acyl CoA synthetase FADD13 (FATTY-ACYL-CoA SYNTHETASE)
著者Andersson, C.S, Martinez Molina, D, Hogbom, M.
登録日2011-03-17
公開日2012-02-08
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Mycobacterium tuberculosis Very-Long-Chain Fatty Acyl-CoA Synthetase: Structural Basis for Housing Lipid Substrates Longer than the Enzyme.
Structure, 20, 2012
6TQZ
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BU of 6tqz by Molmil
Crystal structure of ribonucleotide reductase NrdF L61G variant from Bacillus anthracis aerobically soaked with Fe(II) and Mn(II) ions
分子名称: FE (II) ION, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, ...
著者Grave, K, Hogbom, M.
登録日2019-12-17
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.099335 Å)
主引用文献The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.
J.Biol.Inorg.Chem., 25, 2020
6TQV
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BU of 6tqv by Molmil
Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis aerobically soaked with Fe(II) and Mn(II) ions
分子名称: MANGANESE (II) ION, Ribonucleoside-diphosphate reductase subunit beta, SULFATE ION
著者Grave, K, Hogbom, M.
登録日2019-12-17
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.35000968 Å)
主引用文献The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.
J.Biol.Inorg.Chem., 25, 2020
6TQX
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BU of 6tqx by Molmil
Crystal structure of apo (metal-free) ribonucleotide reductase NrdF L61G variant from Bacillus anthracis
分子名称: Ribonucleoside-diphosphate reductase subunit beta, SULFATE ION
著者Grave, K, Hogbom, M.
登録日2019-12-17
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.0500176 Å)
主引用文献The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.
J.Biol.Inorg.Chem., 25, 2020
8BHW
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BU of 8bhw by Molmil
Full-length bacterial polysaccharide co-polymerase WzzE from E. coli. C4 symmetry
分子名称: ECA polysaccharide chain length modulation protein
著者Wiseman, B, Hogbom, M.
登録日2022-11-01
公開日2023-07-26
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Alternating L4 loop architecture of the bacterial polysaccharide co-polymerase WzzE.
Commun Biol, 6, 2023
8BT3
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BU of 8bt3 by Molmil
Ribonucleotide Reductase class Ie R2 from Mesoplasma florum, catalytically active radical state solved by XFEL
分子名称: Ribonucleoside-diphosphate reductase beta chain
著者Lebrette, H, Srinivas, V, Hogbom, M.
登録日2022-11-27
公開日2023-11-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of a ribonucleotide reductase R2 protein radical.
Science, 382, 2023
8BT4
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BU of 8bt4 by Molmil
Ribonucleotide Reductase class Ie R2 from Mesoplasma florum, radical-lost ground state
分子名称: CALCIUM ION, GLYCEROL, Ribonucleoside-diphosphate reductase
著者Lebrette, H, Srinivas, V, Hogbom, M.
登録日2022-11-27
公開日2023-11-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structure of a ribonucleotide reductase R2 protein radical.
Science, 382, 2023

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