5GVC
| Human Topoisomerase IIIb topo domain | 分子名称: | DNA topoisomerase 3-beta-1, MAGNESIUM ION | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Takahashi, T.S, Fukai, S. | 登録日 | 2016-09-05 | 公開日 | 2017-06-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.436 Å) | 主引用文献 | Structural basis of the interaction between Topoisomerase III beta and the TDRD3 auxiliary factor Sci Rep, 7, 2017
|
|
5GVD
| Human TDRD3 DUF1767-OB domains | 分子名称: | 1,2-ETHANEDIOL, MAGNESIUM ION, PHOSPHATE ION, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Takahashi, T.S, Fukai, S. | 登録日 | 2016-09-05 | 公開日 | 2017-06-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.623 Å) | 主引用文献 | Structural basis of the interaction between Topoisomerase III beta and the TDRD3 auxiliary factor Sci Rep, 7, 2017
|
|
5GVE
| Human TOP3B-TDRD3 complex | 分子名称: | DNA topoisomerase 3-beta-1, MAGNESIUM ION, Tudor domain-containing protein 3 | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Takahashi, T.S, Fukai, S. | 登録日 | 2016-09-05 | 公開日 | 2017-06-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.606 Å) | 主引用文献 | Structural basis of the interaction between Topoisomerase III beta and the TDRD3 auxiliary factor Sci Rep, 7, 2017
|
|
6IXF
| |
6IXE
| Crystal structure of SeMet apo SH3BP5 (I41) | 分子名称: | SH3 domain-binding protein 5, SUCCINIC ACID | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2018-12-10 | 公開日 | 2019-03-20 | 最終更新日 | 2019-03-27 | 実験手法 | X-RAY DIFFRACTION (3.35 Å) | 主引用文献 | Structural basis of guanine nucleotide exchange for Rab11 by SH3BP5. Life Sci Alliance, 2, 2019
|
|
6IXV
| Crystal structure of SH3BP5-Rab11a | 分子名称: | PHOSPHATE ION, Ras-related protein Rab-11A, SH3 domain-binding protein 5 | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2018-12-12 | 公開日 | 2019-03-20 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (3.8 Å) | 主引用文献 | Structural basis of guanine nucleotide exchange for Rab11 by SH3BP5. Life Sci Alliance, 2, 2019
|
|
6J7F
| Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP | 分子名称: | DIPHOSPHATE, FARNESYL, GERAN-8-YL GERAN, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2019-01-18 | 公開日 | 2020-01-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.883 Å) | 主引用文献 | Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP To Be Published
|
|
6J6X
| Crystal structure of apo GGTaseIII | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Geranylgeranyl transferase type-2 subunit beta, MAGNESIUM ION, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2019-01-16 | 公開日 | 2020-01-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.962 Å) | 主引用文献 | Crystal structure of apo GGTaseIII To Be Published
|
|
6J74
| Complex of GGTaseIII and full-length Ykt6 | 分子名称: | Geranylgeranyl transferase type-2 subunit beta, PHOSPHATE ION, Protein prenyltransferase alpha subunit repeat-containing protein 1, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2019-01-16 | 公開日 | 2020-01-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.212 Å) | 主引用文献 | Complex of GGTaseIII and full-length Ykt6 To Be Published
|
|
2YX0
| Crystal structure of P. horikoshii TYW1 | 分子名称: | radical sam enzyme | 著者 | Goto-Ito, S, Ishii, R, Ito, T, Shibata, R, Fusatomi, E, Sekine, S, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-23 | 公開日 | 2007-10-30 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | 主引用文献 | Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis Acta Crystallogr.,Sect.D, 63, 2007
|
|
6IXG
| |
6J7X
| Complex of GGTaseIII, farnesyl-Ykt6, and GGPP | 分子名称: | FORMIC ACID, GERANYLGERANYL DIPHOSPHATE, Geranylgeranyl transferase type-2 subunit beta, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2019-01-18 | 公開日 | 2020-01-22 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP To Be Published
|
|
2ZZN
| The complex structure of aTrm5 and tRNACys | 分子名称: | MAGNESIUM ION, RNA (71-MER), S-ADENOSYLMETHIONINE, ... | 著者 | Goto-Ito, S, Ito, T, Yokoyama, S. | 登録日 | 2009-02-19 | 公開日 | 2009-09-15 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.95 Å) | 主引用文献 | Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation. Nat.Struct.Mol.Biol., 16, 2009
|
|
2ZZM
| The complex structure of aTrm5 and tRNALeu | 分子名称: | MAGNESIUM ION, RNA (84-MER), S-ADENOSYLMETHIONINE, ... | 著者 | Goto-Ito, S, Ito, T, Yokoyama, S. | 登録日 | 2009-02-19 | 公開日 | 2009-09-15 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation Nat.Struct.Mol.Biol., 16, 2009
|
|
2YX1
| Crystal structure of M.jannaschii tRNA m1G37 methyltransferase | 分子名称: | Hypothetical protein MJ0883, SINEFUNGIN, ZINC ION | 著者 | Goto-Ito, S, Ito, T, Ishii, R, Bessho, Y, Yokoyama, S. | 登録日 | 2007-04-23 | 公開日 | 2008-04-22 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structure of archaeal tRNA(m(1)G37)methyltransferase aTrm5. Proteins, 72, 2008
|
|
5XWU
| Crystal structure of PTPdelta Ig1-Ig3 in complex with SALM2 LRR-Ig | 分子名称: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2017-06-30 | 公開日 | 2018-06-06 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (3.162 Å) | 主引用文献 | Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation. Nat Commun, 9, 2018
|
|
5XWS
| Crystal structure of SALM5 LRR-Ig | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat and fibronectin type-III domain-containing protein 5 | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2017-06-30 | 公開日 | 2018-06-06 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (3.084 Å) | 主引用文献 | Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation. Nat Commun, 9, 2018
|
|
5XWT
| Crystal structure of PTPdelta Ig1-Fn1 in complex with SALM5 LRR-Ig | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S. | 登録日 | 2017-06-30 | 公開日 | 2018-06-06 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (4.178 Å) | 主引用文献 | Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation. Nat Commun, 9, 2018
|
|
3AY0
| Crystal structure of Methanocaldococcus jannaschii Trm5 in complex with adenosine | 分子名称: | ADENOSINE, Uncharacterized protein MJ0883, ZINC ION | 著者 | Goto-Ito, S, Ito, T, Hou, Y.M, Yokoyama, S. | 登録日 | 2011-04-21 | 公開日 | 2011-08-17 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.05 Å) | 主引用文献 | Differentiating analogous tRNA methyltransferases by fragments of the methyl donor. Rna, 17, 2011
|
|
3VRH
| Crystal structure of ph0300 | 分子名称: | BICINE, Putative uncharacterized protein PH0300, ZINC ION | 著者 | Nakagawa, H, Kuratani, M, Goto-Ito, S, Ito, T, Sekine, S.I, Yokoyama, S. | 登録日 | 2012-04-10 | 公開日 | 2013-03-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA. Proteins, 2013
|
|
4Y61
| Crystal structure of the complex between Slitrk2 LRR1 and PTP delta Ig1-Fn1 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-type tyrosine-protein phosphatase delta, SLIT and NTRK-like protein 2 | 著者 | Yamgata, A, Sato, Y, Goto-Ito, S, Uemura, T, Maeda, A, Shiroshima, T, Yoshida, T, Fukai, S. | 登録日 | 2015-02-12 | 公開日 | 2015-06-03 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.358 Å) | 主引用文献 | Structure of Slitrk2-PTP delta complex reveals mechanisms for splicing-dependent trans-synaptic adhesion. Sci Rep, 5, 2015
|
|
3AXZ
| Crystal structure of Haemophilus influenzae TrmD in complex with adenosine | 分子名称: | ADENOSINE, tRNA (guanine-N(1)-)-methyltransferase | 著者 | Yoshida, K, Goto-Ito, S, Ito, T, Hou, Y.M, Yokoyama, S. | 登録日 | 2011-04-21 | 公開日 | 2011-08-17 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Differentiating analogous tRNA methyltransferases by fragments of the methyl donor. Rna, 17, 2011
|
|
6A6I
| Crystal structure of the winged-helix domain of Cockayne syndrome group B protein in complex with ubiquitin | 分子名称: | CHLORIDE ION, Excision repair cross-complementing rodent repair deficiency, complementation group 6 variant, ... | 著者 | Takahashi, T.S, Sato, Y, Fukai, S. | 登録日 | 2018-06-28 | 公開日 | 2019-02-13 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structural basis of ubiquitin recognition by the winged-helix domain of Cockayne syndrome group B protein. Nucleic Acids Res., 47, 2019
|
|
5H11
| |
5GVI
| |