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1XV6
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BU of 1xv6 by Molmil
The solution structure of 2',5'-linked 3'-O-(2-methoxyethyl)-RNA hairpin
分子名称: 5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2'
著者Plevnik, M, Gdaniec, Z, Plavec, J.
登録日2004-10-27
公開日2005-04-05
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex
Nucleic Acids Res., 33, 2005
7QB3
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BU of 7qb3 by Molmil
Solution structure of a lanthanide-binding DNA aptamer
分子名称: LUTETIUM (III) ION, Lanthanide-binding aptamer
著者Andralojc, W, Gdaniec, Z.
登録日2021-11-18
公開日2021-12-01
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution Structure of a Lanthanide-binding DNA Aptamer Determined Using High Quality pseudocontact shift restraints.
Chemistry, 28, 2022
1FEQ
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BU of 1feq by Molmil
NMR SOLUTION STRUCTURE OF THE ANTICODON OF TRNA(LYS3) WITH T6A MODIFICATION AT POSITION 37
分子名称: 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*UP*UP*(T6A)P*AP*UP*CP*UP*GP*C)-3'
著者Stuart, J.W, Gdaniec, Z, Guenther, R.H, Marszalek, M, Sochacka, E, Malkiewicz, A, Agris, P.F.
登録日2000-07-21
公開日2000-11-22
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
Biochemistry, 39, 2000
8OR8
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BU of 8or8 by Molmil
Solution structure of the 8-17 DNAzyme in presence of Zn2+
分子名称: 8-17 DNAzyme
著者Andralojc, W, Gdaniec, Z.
登録日2023-04-13
公開日2023-04-26
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献The 8-17 DNAzyme can operate in a single active structure regardless of metal ion cofactor.
Nat Commun, 15, 2024
6GE1
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BU of 6ge1 by Molmil
Solution structure of the r(UGGUGGU)4 RNA quadruplex
分子名称: RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3')
著者Andralojc, W, Gdaniec, Z.
登録日2018-04-25
公開日2018-10-31
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus.
RNA, 25, 2019
6I1W
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BU of 6i1w by Molmil
Structure of the RNA duplex containing pseudouridine residue (5'-Gp(PSU)pC-3' sequence context)
分子名称: RNA (5'-R(*AP*CP*UP*GP*AP*CP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*GP*(PSU)P*CP*AP*GP*U)-3')
著者Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z.
登録日2018-10-30
公開日2019-11-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.
Sci Rep, 9, 2019
6I1V
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BU of 6i1v by Molmil
Structure of the RNA duplex containing pseudouridine residue (5'-Cp(PSU)pG-3' sequence context)
分子名称: RNA (5'-R(*AP*CP*UP*CP*AP*GP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*CP*(PSU)P*GP*AP*GP*U)-3')
著者Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z.
登録日2018-10-30
公開日2019-11-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.
Sci Rep, 9, 2019
2MCJ
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BU of 2mcj by Molmil
NMR structure of spermine modified DNA duplex
分子名称: DNA_(5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3')
著者Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T.
登録日2013-08-20
公開日2014-01-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine.
Biochim.Biophys.Acta, 1840, 2014
2JXS
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BU of 2jxs by Molmil
NMR structure of RNA duplex containing single adenosine bulge
分子名称: 5'-R(*CP*GP*CP*UP*CP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*AP*GP*AP*GP*CP*G)-3'
著者Popenda, L, Adamiak, R.W, Gdaniec, Z.
登録日2007-11-29
公開日2008-05-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Bulged adenosine influence on the RNA duplex conformation in solution.
Biochemistry, 47, 2008
2K41
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BU of 2k41 by Molmil
NMR structure of uridine bulged RNA duplex
分子名称: RNA_(5'-R(*CP*AP*GP*CP*CP*GP*AP*C)-3')_, RNA_(5'-R(*GP*UP*CP*GP*UP*GP*CP*UP*G)-3')_
著者Popenda, L, Bielecki, L, Gdaniec, Z, Adamiak, R.W.
登録日2008-05-26
公開日2008-11-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure and dynamics of adenosine bulged RNA duplex reveals formation of the dinucleotide platform in the C:G-A triple
ARKIVOC, 2009, 2008
2K3Z
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BU of 2k3z by Molmil
NMR structure of adenosine bulged RNA duplex with C:G-A triple
分子名称: RNA_(5'-R(*CP*AP*GP*CP*CP*GP*AP*C)-3')_, RNA_(5'-R(*GP*UP*CP*GP*AP*GP*CP*UP*G)-3')_
著者Popenda, L, Bielecki, L, Gdaniec, Z, Adamiak, R.W.
登録日2008-05-26
公開日2008-11-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure and dynamics of adenosine bulged RNA duplex reveals formation of the dinucleotide platform in the C:G-A triple
ARKIVOC, 2009, 2008
2JXQ
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BU of 2jxq by Molmil
NMR structure of RNA duplex
分子名称: RNA (5'-R(*CP*GP*CP*UP*CP*UP*CP*UP*GP*C)-3'), RNA (5'-R(*GP*CP*AP*GP*AP*GP*AP*GP*CP*G)-3')
著者Popenda, L, Adamiak, R.W, Gdaniec, Z.
登録日2007-11-28
公開日2008-05-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Bulged adenosine influence on the RNA duplex conformation in solution.
Biochemistry, 47, 2008
2MCI
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BU of 2mci by Molmil
NMR structure of DNA duplex
分子名称: DNA_(5'-D(*CP*AP*GP*CP*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3')
著者Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T.
登録日2013-08-20
公開日2014-01-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine.
Biochim.Biophys.Acta, 1840, 2014
6F3O
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BU of 6f3o by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa complexed with adenine, K+ and Zn2+ cations
分子名称: ADENINE, Adenosylhomocysteinase, GLYCEROL, ...
著者Czyrko, J, Brzezinski, K.
登録日2017-11-28
公開日2018-08-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3N
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BU of 6f3n by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa cocrystallized with SAH in the presence of K+ and Zn2+ cations
分子名称: ADENOSINE, Adenosylhomocysteinase, GLYCEROL, ...
著者Czyrko, J, Brzezinski, K.
登録日2017-11-28
公開日2018-08-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3M
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BU of 6f3m by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa complexed with adenosine, K+ and Zn2+ cations
分子名称: ADENOSINE, Adenosylhomocysteinase, GLYCEROL, ...
著者Czyrko, J, Brzezinski, K.
登録日2017-11-28
公開日2018-08-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3Q
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BU of 6f3q by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa in complex with adenine and Rb+ cation
分子名称: ADENINE, Adenosylhomocysteinase, DI(HYDROXYETHYL)ETHER, ...
著者Czyrko, J, Brzezinski, K.
登録日2017-11-28
公開日2018-08-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018
6F3P
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Crystal structure of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa in complex with 3'-deoxyadenosine and K+ cation
分子名称: 3'-DEOXYADENOSINE, Adenosylhomocysteinase, CHLORIDE ION, ...
著者Czyrko, J, Brzezinski, K.
登録日2017-11-28
公開日2018-08-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.
Sci Rep, 8, 2018

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